app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.io.File;
  13 import java.net.URI;
  14 import java.net.URISyntaxException;
  15 import java.util.UUID;
  16
  17 import org.apache.log4j.Logger;
  18
  19 import eu.etaxonomy.cdm.api.application.ICdmRepository;
  20 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  21 import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;
  22 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  23 import eu.etaxonomy.cdm.app.wp6.palmae.config.PalmaeProtologueImportConfigurator;
  24 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  25 import eu.etaxonomy.cdm.database.ICdmDataSource;
  26 import eu.etaxonomy.cdm.io.PalmaeImageImport;
  27 import eu.etaxonomy.cdm.io.PalmaeProtologueImport;
  28 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  30 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  31 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  32 import eu.etaxonomy.cdm.io.common.ImportResult;
  33 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  34 import eu.etaxonomy.cdm.model.description.Feature;
  35 import eu.etaxonomy.cdm.model.description.FeatureNode;
  36 import eu.etaxonomy.cdm.model.description.FeatureTree;
  37
  38 /**
  39  * @author a.mueller
  40  * @created 20.06.2008
  41  * @version 1.0
  42  */
  43 public class PalmaeActivator {
  44         private static final Logger logger = Logger.getLogger(PalmaeActivator.class);
  45
  46         //database validation status (create, update, validate ...)
  47         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  48         static final String tcsSource = TcsSources.arecaceae_local();
  49         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Palmae();
  50
  51         // set the webserver path to the images
  52         private static final String imageUrlString = "http://wp5.e-taxonomy.eu/media/palmae/photos/";
  53         // set the webserver path to the protologues
  54         public static final String protologueUrlString = "http://wp5.e-taxonomy.eu/media/palmae/protologe/";
  55
  56         public static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  57
  58         static final UUID treeUuid = UUID.fromString("1adb71d4-cce6-45e1-b578-e668778d9ec6");
  59         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  60         static final String sourceSecId = "palm_pub_ed_999999";
  61         static final boolean pubishReferencesInBibliography = false;
  62
  63         //should the other imports run as well?
  64         static final boolean includeTaxonX = true;
  65         static final boolean includeImages = true;
  66         static final boolean includeExcelProtologue = true;
  67         static final boolean includeMediaProtologue = true;
  68         static final boolean updateFeatureTree = true;
  69         static final boolean updateNameUsage = true;
  70
  71         //check - import
  72         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  73
  74         static boolean useClassification = true;
  75
  76         //authors
  77         static final boolean doAuthors = true;
  78         //references
  79         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  80         //names
  81         static final boolean doTaxonNames = true;
  82         static final boolean doRelNames = true;
  83
  84         //taxa
  85         static final boolean doTaxa = true;
  86         static final boolean doRelTaxa = true;
  87         static final boolean doFacts = true;
  88
  89
  90         private ImportResult doImport(ICdmDataSource destination){
  91                 ImportResult success;
  92                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  93
  94                 //make Source
  95                 URI source;
  96                 try {
  97                         source = new URI(tcsSource);
  98
  99                         TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
 100
 101                         tcsImportConfigurator.setClassificationUuid(treeUuid);
 102                         tcsImportConfigurator.setSecUuid(secUuid);
 103                         tcsImportConfigurator.setSourceSecId(sourceSecId);
 104
 105                         tcsImportConfigurator.setDoReferences(doReferences);
 106                         tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
 107                         tcsImportConfigurator.setDoRelNames(doRelNames);
 108
 109                         tcsImportConfigurator.setDoTaxa(doTaxa);
 110                         tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
 111                         tcsImportConfigurator.setDoFacts(doFacts);
 112                         tcsImportConfigurator.setUseClassification(useClassification);
 113                         tcsImportConfigurator.setPublishReferences(pubishReferencesInBibliography);
 114
 115                         tcsImportConfigurator.setCheck(check);
 116                         tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
 117
 118                         // invoke import
 119                         CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 120                         success = tcsImport.invoke(tcsImportConfigurator);
 121
 122                         //make feature tree
 123                         logger.info("Make feature tree");
 124                         ICdmRepository app = tcsImport.getCdmAppController();
 125
 126                         FeatureTree tree = getFeatureTree();
 127                         app.getFeatureTreeService().saveOrUpdate(tree);
 128                         System.out.println("End import from TCS ("+ source.toString() + ")...");
 129
 130                         return success;
 131                 } catch (URISyntaxException e) {
 132                         e.printStackTrace();
 133                         success = new ImportResult();
 134                         success.setSuccess(false);
 135                         success.addReport(e.getMessage().getBytes());
 136                         return success;
 137                 }
 138
 139         }
 140
 141
 142         private FeatureTree getFeatureTree(){
 143
 144                 FeatureTree result = FeatureTree.NewInstance(featureTreeUuid);
 145                 FeatureNode root = result.getRoot();
 146
 147                 FeatureNode newNode;
 148                 newNode = FeatureNode.NewInstance(Feature.INTRODUCTION());
 149                 root.addChild(newNode);
 150                 newNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 151                 root.addChild(newNode);
 152                 newNode = FeatureNode.NewInstance(Feature.BIOLOGY_ECOLOGY());
 153                 root.addChild(newNode);
 154                 newNode = FeatureNode.NewInstance(Feature.CONSERVATION());
 155                 root.addChild(newNode);
 156                 newNode = FeatureNode.NewInstance(Feature.COMMON_NAME());
 157                 root.addChild(newNode);
 158                 newNode = FeatureNode.NewInstance(Feature.ETYMOLOGY());
 159                 root.addChild(newNode);
 160                 newNode = FeatureNode.NewInstance(Feature.USES());
 161                 root.addChild(newNode);
 162                 newNode = FeatureNode.NewInstance(Feature.CULTIVATION());
 163                 root.addChild(newNode);
 164                 newNode = FeatureNode.NewInstance(Feature.DISCUSSION());
 165                 root.addChild(newNode);
 166                 newNode = FeatureNode.NewInstance(Feature.DIAGNOSIS());
 167                 root.addChild(newNode);
 168                 newNode = FeatureNode.NewInstance(Feature.DESCRIPTION());
 169                 root.addChild(newNode);
 170                 newNode = FeatureNode.NewInstance(Feature.MATERIALS_EXAMINED());
 171                 root.addChild(newNode);
 172                 newNode = FeatureNode.NewInstance(Feature.ANATOMY());
 173                 root.addChild(newNode);
 174
 175                 return result;
 176
 177
 178         }
 179
 180         /**
 181          * @param args
 182          */
 183         public static void main(String[] args) {
 184                 ImportResult success;
 185
 186                 logger.debug("start");
 187                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 188
 189                 PalmaeActivator me = new PalmaeActivator();
 190                 me.doImport(destination);
 191
 192                 if (includeImages){
 193                         System.out.println("Start importing images ...");
 194                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 195                         URI folderUri;
 196                         try {
 197                                 folderUri = new URI(PalmaeImageActivator.sourceFolderString);
 198                                 ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 199                                                 folderUri, destination, imageUrlString, PalmaeImageImport.class);
 200                                 imageConfigurator.setSecUuid(secUuid);
 201                                 success = imageImporter.invoke(imageConfigurator);
 202                                 System.out.println("End importing images ...");
 203                         } catch (URISyntaxException e) {
 204                                 e.printStackTrace();
 205                         }
 206                 }
 207
 208                 if (includeExcelProtologue){
 209                         System.out.println("Start importing protologues ...");
 210                         URI fileUri;
 211                         try {
 212                                 fileUri = new URI(PalmaeExcelProtologueActivator.sourceFileString);
 213                                 ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 214                                                 fileUri, destination, protologueUrlString, PalmaeProtologueImport.class);
 215                                 imageConfigurator.setSecUuid(secUuid);
 216
 217                                 CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 218                                 imageImporter.invoke(imageConfigurator);
 219                                 System.out.println("End importing protologues ...");
 220                         } catch (URISyntaxException e) {
 221                                 e.printStackTrace();
 222                         }
 223
 224                 }
 225                 if (includeMediaProtologue){
 226                         System.out.println("Start importing protologues from \\\\media...");
 227                         String protologueSource = PalmaeProtologueImportActivator.protologueSource;
 228                         String urlString = protologueUrlString;
 229
 230                         File source = new File (protologueSource);
 231                         PalmaeProtologueImportConfigurator protologConfig = PalmaeProtologueImportConfigurator.NewInstance(source, destination, urlString);
 232                         CdmDefaultImport<IImportConfigurator> cdmImport = new CdmDefaultImport<IImportConfigurator>();
 233
 234                         //protologConfig.setDoFacts(doDescriptions);
 235                         protologConfig.setCheck(check);
 236                         protologConfig.setDbSchemaValidation(DbSchemaValidation.UPDATE);
 237
 238                         success = cdmImport.invoke(protologConfig);
 239
 240                         System.out.println("End importing protologues ...");
 241                 }
 242
 243                 if (includeTaxonX){
 244                         System.out.println("Start importing taxonX ...");
 245                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 246                         PalmaeTaxonXImportActivator.cdmDestination = destination;
 247                         success = taxonXimporter.runImport();
 248                         System.out.println("End importing taxonX ...");
 249                 }
 250
 251                 PalmaePostImportUpdater updater = new PalmaePostImportUpdater();
 252                 if (updateFeatureTree){
 253                         updater.updateMissingFeatures(destination);
 254                 }
 255
 256                 if (updateNameUsage){
 257                         updater.updateNameUsage(destination);
 258                 }
 259
 260
 261                 String strSuccess = "";
 262                 if (success.isSuccess() == false){
 263                         strSuccess = "not ";
 264                 }
 265                 System.out.println("Import " + strSuccess + "successful");
 266
 267         }
 268
 269 }