app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaImportActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.dwca;
  11
  12 import java.net.URI;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.common.events.LoggingIoObserver;
  24 import eu.etaxonomy.cdm.io.dwca.in.DwcaImportConfigurator;
  25 import eu.etaxonomy.cdm.model.agent.Person;
  26 import eu.etaxonomy.cdm.model.reference.Reference;
  27 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  28
  29 /**
  30  * @author a.mueller
  31  * @created 16.12.2010
  32  * @version 1.0
  33  */
  34 public class DwcaImportActivator {
  35         private static final Logger logger = Logger.getLogger(DwcaImportActivator.class);
  36
  37         //database validation status (create, update, validate ...)
  38         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  39 //      static final URI source = dwca_test_in();
  40         static final URI source = dwca_test_cich_len();
  41
  42
  43 //      static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  44 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_dwca();
  45         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
  46
  47
  48         //feature tree uuid
  49         public static final UUID featureTreeUuid = UUID.fromString("14d1e912-5ec2-4d10-878b-828788b70a87");
  50
  51         //classification
  52         static final UUID classificationUuid = UUID.fromString("d964c855-3916-4c8d-bdb6-acf9cd736b87");
  53
  54         //check - import
  55         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  56
  57         //taxa
  58         static final boolean doTaxa = true;
  59         static final boolean doDeduplicate = false;
  60         static final boolean doDistribution = false;
  61
  62
  63         private void doImport(ICdmDataSource cdmDestination){
  64
  65                 //make Source
  66                 DwcaImportConfigurator config= DwcaImportConfigurator.NewInstance(source, cdmDestination);
  67                 config.addObserver(new LoggingIoObserver());
  68                 config.setClassificationUuid(classificationUuid);
  69                 config.setCheck(check);
  70                 config.setDbSchemaValidation(hbm2dll);
  71
  72                 CdmDefaultImport myImport = new CdmDefaultImport();
  73
  74
  75                 //...
  76                 if (true){
  77                         System.out.println("Start import from ("+ source.toString() + ") ...");
  78                         config.setSourceReference(getSourceReference(config.getSourceReferenceTitle()));
  79                         myImport.invoke(config);
  80                         System.out.println("End import from ("+ source.toString() + ")...");
  81                 }
  82
  83
  84
  85                 //deduplicate
  86                 if (doDeduplicate){
  87                         ICdmApplicationConfiguration app = myImport.getCdmAppController();
  88                         int count = app.getAgentService().deduplicate(Person.class, null, null);
  89                         logger.warn("Deduplicated " + count + " persons.");
  90 //                      count = app.getAgentService().deduplicate(Team.class, null, null);
  91 //                      logger.warn("Deduplicated " + count + " teams.");
  92                         count = app.getReferenceService().deduplicate(Reference.class, null, null);
  93                         logger.warn("Deduplicated " + count + " references.");
  94                 }
  95
  96         }
  97
  98         private Reference getSourceReference(String string) {
  99                 Reference result = ReferenceFactory.newGeneric();
 100                 result.setTitleCache(string);
 101                 return result;
 102         }
 103
 104         //Dwca
 105         public static URI dwca_test_in() {
 106 //              URI sourceUrl = URI.create("http://dev.e-taxonomy.eu/trac/export/14463/trunk/cdmlib/cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/dwca/in/DwcaZipToStreamConverterTest-input.zip");
 107                 URI sourceUrl = URI.create("file:///C:/Users/pesiimport/Documents/pesi_cdmlib/cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/dwca/in/DwcaZipToStreamConverterTest-input.zip");
 108                 return sourceUrl;
 109         }
 110
 111
 112         //Dwca
 113         public static URI dwca_test_cich() {
 114                 URI sourceUrl = URI.create("file:///E:/opt/data/dwca/20110621_1400_cichorieae_dwca.zip");
 115                 return sourceUrl;
 116         }
 117
 118         //Dwca
 119         public static URI dwca_test_cich_len() {
 120                 URI sourceUrl = URI.create("file:///C:/localCopy/Data/dwca/export/20110621_1400_cichorieae_dwca.zip");
 121                 return sourceUrl;
 122         }
 123
 124
 125
 126
 127
 128
 129         /**
 130          * @param args
 131          */
 132         public static void main(String[] args) {
 133                 DwcaImportActivator me = new DwcaImportActivator();
 134                 me.doImport(cdmDestination);
 135         }
 136
 137 }