app-import/src/main/java/eu/etaxonomy/cdm/io/cuba/CubaTransformer.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2007 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10
  11 package eu.etaxonomy.cdm.io.cuba;
  12
  13 import java.util.UUID;
  14
  15 import org.apache.commons.lang.StringUtils;
  16 import org.apache.log4j.Logger;
  17
  18 import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
  19 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  20 import eu.etaxonomy.cdm.io.cyprus.CyprusTransformer;
  21 import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
  22
  23 /**
  24  * @author a.mueller
  25  * @created 01.03.2010
  26  */
  27 public final class CubaTransformer extends InputTransformerBase {
  28     private static final long serialVersionUID = 1070018208741186271L;
  29
  30     @SuppressWarnings("unused")
  31         private static final Logger logger = Logger.getLogger(CubaTransformer.class);
  32
  33     //references
  34     public static final UUID uuidRefFRC = UUID.fromString("c1caf6a2-5083-4f44-8f97-9abe23a84cd8");
  35     public static final UUID uuidRefAS = UUID.fromString("1f15291a-b4c5-4e15-960f-d0145a250539");
  36     public static final UUID uuidRefFC = UUID.fromString("c5a0bfb8-85b2-422d-babe-423aa2e24c35");
  37
  38     //featureUUID
  39     public static final UUID uuidAlternativeFamily = UUID.fromString("a005f8a1-6377-4641-a826-185f67136860");
  40     public static final UUID uuidAlternativeFamily2 = UUID.fromString("ff15b54a-6785-4ba0-acb6-8fb2eab80a6a");
  41
  42     //presenceTerm
  43     public static final UUID nonNativeDoubtfullyNaturalisedUuid = UUID.fromString("a1e26234-831e-4190-9fe3-011aca09ddba");
  44     public static final UUID adventiveAlienUuid = UUID.fromString("06e48a0b-3e48-4ef8-9bdd-0755880e99ce");
  45     public static final UUID cultivatedOnlyUuid = UUID.fromString("9cca5c3b-aced-41c4-accc-f800b67168f8");
  46     public static final UUID occasionallyCultivatedUuid = UUID.fromString("936c3f9a-6099-4322-9792-0a72c6c2ce25");
  47     public static final UUID doubtfulIndigenousUuid = UUID.fromString("f47f4f4e-9d84-459a-b747-27a1af24ab7a");
  48     public static final UUID doubtfulIndigenousDoubtfulUuid = UUID.fromString("7ddfd94d-01a4-496c-a6d6-18584c00af59");
  49
  50     public static final UUID doubtfullyEndemicUuid = UUID.fromString("5f954f08-267a-4928-b073-12328f74c187");
  51     public static final UUID doubtfullyNaturalisedUuid = UUID.fromString("9e0b413b-5a68-4e5b-91f2-227b4f832466");
  52     public static final UUID doubtfullyNonNativeUuid = UUID.fromString("c42ca644-1773-4230-a2ee-328a5d4a21ab");
  53     public static final UUID endemicInErrorUuid = UUID.fromString("679b215d-c231-4ee2-ae12-3ffc3dd528ad");
  54     public static final UUID adventiveInErrorUuid = UUID.fromString("9b910b7b-43e3-4260-961c-6063b11cb7dc");
  55     public static final UUID nonNativeInErrorUuid = UUID.fromString("b9153d90-9e31-465a-a28c-79077a8ed4c2");
  56     public static final UUID naturalisedInErrorUuid = UUID.fromString("8d918a37-3add-4e1c-a233-c37dbee209aa");
  57
  58
  59 //    public static final UUID indigenousUuid = UUID.fromString("b325859b-504b-45e0-9ef0-d5c1602fcc0f");
  60 //    public static final UUID casualUuid = UUID.fromString("5e81353c-38a3-4ca6-b979-0d9abc93b877");
  61 //    public static final UUID nonInvasiveUuid = UUID.fromString("1b025e8b-901a-42e8-9739-119b410c6f03");
  62 //    public static final UUID invasiveUuid = UUID.fromString("faf2d271-868a-4bf7-b0b8-a1c5ab309de2");
  63 //    public static final UUID questionableUuid = UUID.fromString("4b48f675-a6cf-49f3-a5ba-77e2c2979eb3");
  64 //
  65 //    public static final UUID indigenousDoubtfulUuid = UUID.fromString("17bc601f-53eb-4997-a4bc-c03ce5bfd1d3");
  66 //    public static final UUID casualDoubtfulUuid = UUID.fromString("73f75493-1185-4a3e-af1e-9a1f2e8dadb7");
  67 //    public static final UUID nonInvasiveDoubtfulUuid = UUID.fromString("11f56e2f-c16c-4b3d-a870-bb5d3b20e624");
  68 //    public static final UUID invasiveDoubtfulUuid = UUID.fromString("ac429d5f-e8ad-49ae-a41c-e4779b58b96a");
  69 //    public static final UUID questionableDoubtfulUuid = UUID.fromString("914e7393-1314-4632-bc45-5eff3dc1e424");
  70 //
  71 //    public static final UUID cultivatedDoubtfulUuid = UUID.fromString("4f31bfc8-3058-4d83-aea5-3a1fe9773f9f");
  72
  73
  74     //Named Areas
  75     public static final UUID uuidCubaVocabulary = UUID.fromString("2119f610-1f93-4d87-af28-40aeefaca100");
  76 //    public static final UUID uuidCyprusDivisionsAreaLevel = UUID.fromString("ff52bbd9-f73d-4476-af39-f3991fa892bd");
  77
  78     public static final UUID uuidCuba = UUID.fromString("d0144a6e-0e17-4a1d-bce5-d464a2aa7229");
  79
  80     public static final UUID uuidWesternCuba = UUID.fromString("53ee35a5-03dd-4c1e-9b23-1a0d08489684");
  81     public static final UUID uuidPinarDelRio = UUID.fromString("ee1bae89-b6a8-4b89-a864-238fe3c4dbf3");
  82     public static final UUID uuidHabana = UUID.fromString("ff906b63-6e74-4a38-b492-73d32817ad3a");
  83     public static final UUID uuidCiudadHabana = UUID.fromString("af96dc90-ef03-4e2c-9c65-50dd1cca4f4f");
  84     public static final UUID uuidMayabeque = UUID.fromString("7813fc47-1038-49d0-9fc7-07d245abcf2d");
  85     public static final UUID uuidArtemisa = UUID.fromString("7e236945-1097-43f7-9deb-dedf3f45dfe1");
  86     public static final UUID uuidMatanzas = UUID.fromString("bc280278-1b67-4766-ba28-e3a5c215d6a9");
  87     public static final UUID uuidIslaDeLaJuventud = UUID.fromString("0e0683d6-90d4-4b0f-834e-05737ca9b2b4");
  88
  89     public static final UUID uuidCentralCuba = UUID.fromString("25eb5879-358e-4ff7-837d-101569d5d843");
  90     public static final UUID uuidVillaClara = UUID.fromString("4de5e35d-fdad-49d0-a5c8-dc44e4e844a0");
  91     public static final UUID uuidCienfuegos = UUID.fromString("c4189205-4543-4f4d-b211-6f899734a2f1");
  92     public static final UUID uuidSanctiSpiritus = UUID.fromString("70ee99b9-d006-4a08-a8c2-19269d60865f");
  93     public static final UUID uuidCiegoDeAvila = UUID.fromString("2ce7f4bc-4142-4866-b156-cf5300973c6d");
  94     public static final UUID uuidCamaguey = UUID.fromString("4a4e2ab9-bce1-4018-8654-e7dfe6ea9a0f");
  95     public static final UUID uuidLasTunas = UUID.fromString("6e0e9c28-23fe-4ea7-8ae1-75e1dce385e9");
  96
  97     public static final UUID uuidEastCuba = UUID.fromString("6a9ed0e2-7d3a-4620-9376-720c166674ee");
  98     public static final UUID uuidGranma = UUID.fromString("7098418f-992a-4888-b4a0-722870bc7c69");
  99     public static final UUID uuidHolguin = UUID.fromString("1595e1f2-5ae6-4db7-982c-552c26130051");
 100     public static final UUID uuidSantiagoDeCuba = UUID.fromString("838a2e44-f3cc-4d89-83a8-6f83c6f9726d");
 101     public static final UUID uuidGuantanamo = UUID.fromString("3a76b1af-da3a-44a3-859f-eeba5ad6f58b");
 102
 103     public static final UUID uuidEspanola = UUID.fromString("27d9d0f3-cd5f-4f3e-979d-64e47b6b5768");
 104     public static final UUID uuidJamaica = UUID.fromString("2825a0ee-0bd1-49d5-afb4-bac80db5551f");
 105     public static final UUID uuidPuertoRico = UUID.fromString("9fca701d-4899-4266-a29f-0d136670c795");
 106     public static final UUID uuidSmallerAntilles = UUID.fromString("9720309a-2467-4aad-992e-b3c34b95d8d7");
 107     public static final UUID uuidBahamas = UUID.fromString("23615e27-e916-48f4-8d49-8c148106216c");
 108     public static final UUID uuidCaymanIslands = UUID.fromString("f53ea0b5-3bca-4e95-9a10-2d13edcd7501");
 109     public static final UUID uuidNorthAmerica = UUID.fromString("5ab08324-baa2-4121-8c37-e1d558b51f2f");
 110     public static final UUID uuidCentralAmerica = UUID.fromString("4d972402-5ef8-43d8-a377-f0b6dd88d32e");
 111     public static final UUID uuidSouthAmerica = UUID.fromString("0fccc041-ce9d-40d5-8b9b-d7d833feed38");
 112     public static final UUID uuidOldWorld = UUID.fromString("c6b45544-01df-4c97-bb29-9058964c5b57");
 113
 114     @Override
 115     public UUID getNamedAreaUuid(String key) throws UndefinedTransformerMethodException {
 116         if (StringUtils.isBlank(key)){return null;
 117
 118
 119         }else if (key.equalsIgnoreCase("C")){return uuidCuba;
 120         }else if (key.equalsIgnoreCase("CuW")){return uuidWesternCuba;
 121         }else if (key.equalsIgnoreCase("PR*")){return uuidPinarDelRio;
 122         }else if (key.equalsIgnoreCase("PR PR*")){return uuidPinarDelRio;
 123 //        }else if (key.equals("HAB")){return uuidHabana;
 124         }else if (key.equalsIgnoreCase("Hab*")){return uuidCiudadHabana;
 125         }else if (key.equalsIgnoreCase("Hab(*)")){return uuidCiudadHabana;
 126         }else if (key.equalsIgnoreCase("May")){return uuidMayabeque;
 127         }else if (key.equalsIgnoreCase("Art")){return uuidArtemisa;
 128
 129         }else if (key.equalsIgnoreCase("Mat")){return uuidMatanzas;
 130         }else if (key.equalsIgnoreCase("IJ")){return uuidIslaDeLaJuventud;
 131
 132         }else if (key.equalsIgnoreCase("CuC")){return uuidCentralCuba;
 133         }else if (key.equalsIgnoreCase("VC")){return uuidVillaClara;
 134         }else if (key.equalsIgnoreCase("Ci")){return uuidCienfuegos;
 135         }else if (key.equalsIgnoreCase("SS")){return uuidSanctiSpiritus;
 136         }else if (key.equalsIgnoreCase("CA")){return uuidCiegoDeAvila;
 137         }else if (key.equalsIgnoreCase("Cam")){return uuidCamaguey;
 138         }else if (key.equalsIgnoreCase("LT")){return uuidLasTunas;
 139
 140         }else if (key.equalsIgnoreCase("CuE")){return uuidEastCuba;
 141         }else if (key.equalsIgnoreCase("Gr")){return uuidGranma;
 142         }else if (key.equalsIgnoreCase("Ho")){return uuidHolguin;
 143         }else if (key.equalsIgnoreCase("SC")){return uuidSantiagoDeCuba;
 144         }else if (key.equalsIgnoreCase("Gu")){return uuidGuantanamo;
 145
 146         }else if (key.equalsIgnoreCase("Esp")){return uuidEspanola;
 147         }else if (key.equalsIgnoreCase("Ja")){return uuidJamaica;
 148         }else if (key.equalsIgnoreCase("PR")){return uuidPuertoRico;
 149         }else if (key.equalsIgnoreCase("Men")){return uuidSmallerAntilles;
 150         }else if (key.equalsIgnoreCase("Bah")){return uuidBahamas;
 151         }else if (key.equalsIgnoreCase("Cay")){return uuidCaymanIslands;
 152         }else if (key.equalsIgnoreCase("AmN")){return uuidNorthAmerica;
 153         }else if (key.equalsIgnoreCase("AmC")){return uuidCentralAmerica;
 154         }else if (key.equalsIgnoreCase("AmS")){return uuidSouthAmerica;
 155         }else if (key.equalsIgnoreCase("VM")){return uuidOldWorld;
 156         }else{
 157             return null;
 158         }
 159     }
 160
 161
 162
 163     @Override
 164     public UUID getPresenceTermUuid(String key) throws UndefinedTransformerMethodException {
 165         if (StringUtils.isBlank(key)){return null;
 166         }else if (key.equalsIgnoreCase("Ind.")){return CyprusTransformer.indigenousUuid;
 167         }else if (key.equalsIgnoreCase("+")){return CyprusTransformer.indigenousUuid;
 168         }else if (key.equalsIgnoreCase("?Ind.")){return CyprusTransformer.indigenousDoubtfulUuid;
 169         }else if (key.equalsIgnoreCase("?")){return CyprusTransformer.indigenousDoubtfulUuid;
 170         }else if (key.equalsIgnoreCase("?Cult.")){return CyprusTransformer.cultivatedDoubtfulUuid;
 171
 172
 173         }else if (key.equalsIgnoreCase("Ind.?")){return doubtfulIndigenousUuid;
 174         }else if (key.equalsIgnoreCase("D")){return doubtfulIndigenousUuid;
 175         }else if (key.equalsIgnoreCase("?Ind.?")){return doubtfulIndigenousUuid;
 176         }else if (key.equalsIgnoreCase("??")){return doubtfulIndigenousDoubtfulUuid;
 177
 178         }else if (key.equalsIgnoreCase("Dud.")){return nonNativeDoubtfullyNaturalisedUuid;
 179         }else if (key.equalsIgnoreCase("P")){return nonNativeDoubtfullyNaturalisedUuid;
 180
 181         }else if (key.equalsIgnoreCase("Adv.")){return adventiveAlienUuid;
 182         }else if (key.equalsIgnoreCase("A")){return adventiveAlienUuid;
 183
 184         }else if (key.equalsIgnoreCase("Cult.")){return cultivatedOnlyUuid;
 185         }else if (key.equalsIgnoreCase("C")){return cultivatedOnlyUuid;
 186         }else if (key.equalsIgnoreCase("(C)")){return occasionallyCultivatedUuid;
 187
 188         }else if (key.equalsIgnoreCase("?E")){return doubtfullyEndemicUuid;
 189         }else if (key.equalsIgnoreCase("?Nat.")){return doubtfullyNaturalisedUuid;
 190         }else if (key.equalsIgnoreCase("?N")){return doubtfullyNaturalisedUuid;
 191         }else if (key.equalsIgnoreCase("?Dud.")){return doubtfullyNonNativeUuid;
 192         }else if (key.equalsIgnoreCase("?P")){return doubtfullyNonNativeUuid;
 193         }else if (key.equalsIgnoreCase("-End.")){return endemicInErrorUuid;
 194         }else if (key.equalsIgnoreCase("-E")){return endemicInErrorUuid;
 195         }else if (key.equalsIgnoreCase("-Nat.")){return naturalisedInErrorUuid;
 196         }else if (key.equalsIgnoreCase("-N")){return naturalisedInErrorUuid;
 197         }else if (key.equalsIgnoreCase("-Dud.")){return nonNativeInErrorUuid;
 198         }else if (key.equalsIgnoreCase("-P")){return nonNativeInErrorUuid;
 199         }else if (key.equalsIgnoreCase("-Adv.")){return adventiveInErrorUuid;
 200         }else if (key.equalsIgnoreCase("-A")){return adventiveInErrorUuid;
 201
 202
 203         }else{
 204             return null;
 205         }
 206     }
 207
 208
 209     @Override
 210     public PresenceAbsenceTerm getPresenceTermByKey(String key) throws UndefinedTransformerMethodException {
 211         if (StringUtils.isBlank(key)){return null;
 212
 213         }else if (key.equalsIgnoreCase("E")){return PresenceAbsenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA();
 214
 215         }else if (key.equalsIgnoreCase("-Ind.")){return PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR();
 216
 217         }else if (key.equalsIgnoreCase("Nat.")){return PresenceAbsenceTerm.NATURALISED();
 218         }else if (key.equalsIgnoreCase("N")){return PresenceAbsenceTerm.NATURALISED();
 219
 220         }else if (key.equalsIgnoreCase("Cult.")){return PresenceAbsenceTerm.CULTIVATED();
 221         }else if (key.equalsIgnoreCase("C")){return PresenceAbsenceTerm.CULTIVATED();
 222
 223         }else if (key.equalsIgnoreCase("-Cult.")){return PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();
 224
 225         }else if (key.equalsIgnoreCase("--")){return PresenceAbsenceTerm.REPORTED_IN_ERROR();
 226
 227 //        }else if (key.equalsIgnoreCase("--")){return PresenceAbsenceTerm;
 228
 229         }else{
 230             return null;
 231         }
 232     }
 233
 234     @Override
 235     public UUID getFeatureUuid(String key) throws UndefinedTransformerMethodException {
 236         if (key == null){
 237             return null;
 238         }else if (key.equalsIgnoreCase("Alt.Fam.")){
 239             return uuidAlternativeFamily;
 240         }else if (key.equalsIgnoreCase("Alt.Fam.2")){
 241             return uuidAlternativeFamily2;
 242         }else{
 243             throw new RuntimeException("feature not defined: " + key);
 244         }
 245     }
 246
 247
 248
 249 }