app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisTransformer.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2007 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10
  11 package eu.etaxonomy.cdm.io.globis;
  12
  13 import java.util.HashSet;
  14 import java.util.Set;
  15 import java.util.UUID;
  16
  17 import org.apache.commons.lang.StringUtils;
  18 import org.apache.log4j.Logger;
  19
  20 import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;
  21 import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
  22 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  23 import eu.etaxonomy.cdm.model.common.ExtensionType;
  24 import eu.etaxonomy.cdm.model.description.Feature;
  25 import eu.etaxonomy.cdm.model.location.NamedArea;
  26 import eu.etaxonomy.cdm.model.location.Country;
  27
  28 /**
  29  * @author a.mueller
  30  * @created 01.03.2010
  31  * @version 1.0
  32  */
  33 public final class GlobisTransformer extends InputTransformerBase {
  34         private static final Logger logger = Logger.getLogger(GlobisTransformer.class);
  35
  36
  37         //marker types
  38         public static final UUID uuidCheckedMarkerType = UUID.fromString("f2a7926f-def1-49a6-b642-9b81e6b1e35c");
  39         public static final UUID uuidOldRecordMarkerType = UUID.fromString("8616edc5-00d4-40ca-aca4-d48ec32231e9");
  40         public static final UUID uuidNotAvailableMarkerType = UUID.fromString("6931e584-6fc2-44ab-9084-e6452f8cd5d1");
  41
  42         //extension types
  43         public static final UUID uuidExtTypeNotAvailableReason = UUID.fromString("d7dd5632-8c65-4058-b804-d1291560ac4c");
  44
  45         public NamedArea getNamedAreaByKey(String area)  {
  46                 Set<String> unhandledCountries = new HashSet<String>();
  47
  48                 if (StringUtils.isBlank(area)){return null;
  49                 }else if (area.equals("Argentina")){return Country.ARGENTINAARGENTINEREPUBLIC();
  50                 }else if (area.equals("Bolivia")){return Country.BOLIVIAREPUBLICOF();
  51                 }else if (area.equals("Ghana")){return Country.GHANAREPUBLICOF();
  52                 }else if (area.equals("Angola")){return Country.ANGOLAREPUBLICOF();
  53                 }else if (area.equals("Tanzania")){return Country.TANZANIAUNITEDREPUBLICOF();
  54                 }else if (area.equals("China")){return Country.CHINAPEOPLESREPUBLICOF();
  55                 }else if (area.equals("Brunei")){return Country.BRUNEIDARUSSALAM();
  56                 }else if (area.equals("Australia")){return Country.AUSTRALIACOMMONWEALTHOF();
  57                 }else if (area.equals("Indonesia")){return Country.INDONESIAREPUBLICOF();
  58                 }else if (area.equals("Philippines")){return Country.PHILIPPINESREPUBLICOFTHE();
  59                 }else if (area.equals("Mongolia")){return Country.MONGOLIAMONGOLIANPEOPLESREPUBLIC();
  60                 }else if (area.equals("Russia")){return Country.RUSSIANFEDERATION();
  61                 }else if (area.equals("France")){return Country.FRANCEFRENCHREPUBLIC();
  62                 }else if (area.equals("Poland")){return Country.POLANDPOLISHPEOPLESREPUBLIC();
  63                 }else if (area.equals("Brazil")){return Country.BRAZILFEDERATIVEREPUBLICOF();
  64
  65                 }else if (area.equals("Cuba")){return Country.BRAZILFEDERATIVEREPUBLICOF();
  66                 }else if (area.equals("Guatemala")){return Country.GUATEMALAREPUBLICOF();
  67                 }else if (area.equals("Colombia")){return Country.COLOMBIAREPUBLICOF();
  68                 }else if (area.equals("India")){return Country.INDIAREPUBLICOF();
  69
  70                 }else if (area.equals("Mexico")){return Country.MEXICOUNITEDMEXICANSTATES();
  71                 }else if (area.equals("Peru")){return Country.PERUREPUBLICOF();
  72                 }else if (area.equals("Ecuador")){return Country.ECUADORREPUBLICOF();
  73                 }else if (area.equals("Venezuela")){return Country.VENEZUELABOLIVARIANREPUBLICOF();
  74                 }else if (area.equals("Guyana")){return Country.GUYANAREPUBLICOF();
  75                 }else if (area.equals("Panama")){return Country.PANAMAREPUBLICOF();
  76
  77                 }else if (area.equals("Paraguay")){return Country.PARAGUAYREPUBLICOF();
  78                 }else if (area.equals("Suriname")){return Country.SURINAMEREPUBLICOF();
  79                 }else if (area.equals("Costa Rica")){return Country.COSTARICAREPUBLICOF();
  80                 }else if (area.equals("Ivory Coast")){return Country.COTEDIVOIREIVORYCOASTREPUBLICOFTHE();
  81
  82                 }else if (area.equals("Benin")){return Country.BENINPEOPLESREPUBLICOF();
  83                 }else if (area.equalsIgnoreCase("Kenya")){return Country.KENYAREPUBLICOF();
  84                 }else if (area.equals("Uganda")){return Country.UGANDAREPUBLICOF();
  85                 }else if (area.equals("Zambia")){return Country.ZAMBIAREPUBLICOF();
  86                 }else if (area.equals("Rwanda")){return Country.RWANDARWANDESEREPUBLIC();
  87                 }else if (area.equals("South Africa")){return Country.SOUTHAFRICAREPUBLICOF();
  88                 }else if (area.equals("Botswana")){return Country.BOTSWANAREPUBLICOF();
  89                 }else if (area.equals("Burundi")){return Country.BURUNDIREPUBLICOF();
  90                 }else if (area.equals("Cameroon")){return Country.CAMEROONUNITEDREPUBLICOF();
  91
  92                 }else if (area.equals("Congo")){return Country.CONGOPEOPLESREPUBLICOF();
  93                 }else if (area.equals("Zaire")){return Country.CONGODEMOCRATICREPUBLICOF();
  94                 }else if (area.equals("Equatorial Guinea")){return Country.EQUATORIALGUINEAREPUBLICOF();
  95                 }else if (area.equals("Gabon")){return Country.GABONGABONESEREPUBLIC();
  96                 }else if (area.equals("Liberia")){return Country.LIBERIAREPUBLICOF();
  97
  98                 }else if (area.equals("Togo")){return Country.TOGOTOGOLESEREPUBLIC();
  99                 }else if (area.equals("Guinea")){return Country.GUINEAREVOLUTIONARYPEOPLESREPCOF();
 100                 }else if (area.equals("Guinea-Bissau")){return Country.GUINEABISSAUREPUBLICOF();
 101
 102                 }else if (area.equals("Malawi")){return Country.MALAWIREPUBLICOF();
 103                 }else if (area.equals("Mozambique")){return Country.MOZAMBIQUEPEOPLESREPUBLICOF();
 104                 }else if (area.equals("Nigeria")){return Country.NIGERIAFEDERALREPUBLICOF();
 105                 }else if (area.equals("Senegal")){return Country.SENEGALREPUBLICOF();
 106                 }else if (area.equals("Sierra Leone")){return Country.SIERRALEONEREPUBLICOF();
 107                 }else if (area.equals("Sudan")){return Country.SUDANDEMOCRATICREPUBLICOFTHE();
 108                 }else if (area.equals("Madagascar")){return Country.MADAGASCARREPUBLICOF();
 109                 }else if (area.equals("Comoros")){return Country.COMOROSUNIONOFTHE();
 110
 111                 }else if (area.equals("Vietnam")){return Country.VIETNAMSOCIALISTREPUBLICOF();
 112                 }else if (area.equals("Thailand")){return Country.THAILANDKINGDOMOF();
 113                 }else if (area.equals("Bhutan")){return Country.BHUTANKINGDOMOF();
 114                 }else if (area.equals("Laos")){return Country.LAOPEOPLESDEMOCRATICREPUBLIC();
 115                 }else if (area.equals("Myanmar (Burma)")){return Country.MYANMAR();
 116                 }else if (area.equals("Nepal")){return Country.NEPALKINGDOMOF();
 117                 }else if (area.equals("Pakistan")){return Country.PAKISTANISLAMICREPUBLICOF();
 118                 }else if (area.equals("Singapore")){return Country.SINGAPOREREPUBLICOF();
 119
 120                 }else if (area.equals("Honduras")){return Country.HONDURASREPUBLICOF();
 121                 }else if (area.equals("Nicaragua")){return Country.NICARAGUAREPUBLICOF();
 122                 }else if (area.equals("Trinidad and Tobago")){return Country.TRINIDADANDTOBAGOREPUBLICOF();
 123                 }else if (area.equals("United States")){return Country.UNITEDSTATESOFAMERICA();
 124                 }else if (area.equals("Uruguay")){return Country.URUGUAYEASTERNREPUBLICOF();
 125                 }else if (area.equals("Haiti")){return Country.HAITIREPUBLICOF();
 126                 }else if (area.equals("North Korea")){return Country.KOREADEMOCRATICPEOPLESREPUBLICOF();
 127                 }else if (area.equals("South Korea")){return Country.KOREAREPUBLICOF();
 128                 }else if (area.equals("Taiwan")){return Country.TAIWANPROVINCEOFCHINA();
 129
 130                 }else if (area.equals("Somalia")){return Country.SOMALIASOMALIREPUBLIC();
 131                 }else if (area.equals("Albania")){return Country.ALBANIAPEOPLESSOCIALISTREPUBLICOF();
 132                 }else if (area.equals("Algeria")){return Country.ALGERIAPEOPLESDEMOCRATICREPUBLICOF();
 133
 134                 }else if (area.equals("Andorra")){return Country.ANDORRAPRINCIPALITYOF();
 135                 }else if (area.equals("Austria")){return Country.AUSTRIAREPUBLICOF();
 136                 }else if (area.equals("Azerbaijan")){return Country.AZERBAIJANREPUBLICOF();
 137                 }else if (area.equals("Bulgaria")){return Country.BULGARIAPEOPLESREPUBLICOF();
 138                 }else if (area.equals("Croatia")){return Country.HRVATSKA();
 139                 }else if (area.equals("Greece")){return Country.GREECEHELLENICREPUBLIC();
 140                 }else if (area.equals("Hungary")){return Country.HUNGARYHUNGARIANPEOPLESREPUBLIC();
 141
 142                 }else if (area.equals("Iran")){return Country.IRANISLAMICREPUBLICOF();
 143                 }else if (area.equals("Iraq")){return Country.IRAQREPUBLICOF();
 144                 }else if (area.equals("Israel")){return Country.ISRAELSTATEOF();
 145                 }else if (area.equals("Italy")){return Country.ITALYITALIANREPUBLIC();
 146                 }else if (area.equals("Kazakhstan")){return Country.KAZAKHSTANREPUBLICOF();
 147                 }else if (area.equals("Kyrgyzstan")){return Country.KYRGYZREPUBLIC();
 148                 }else if (area.equals("Lebanon")){return Country.LEBANONLEBANESEREPUBLIC();
 149
 150                 }else if (area.equals("Luxembourg")){return Country.LUXEMBOURGGRANDDUCHYOF();
 151                 }else if (area.equals("Macedonia")){return Country.MACEDONIATHEFORMERYUGOSLAVREPUBLICOF();
 152                 }else if (area.equals("Moldova")){return Country.MOLDOVAREPUBLICOF();
 153                 }else if (area.equals("Morocco")){return Country.MOROCCOKINGDOMOF();
 154                 }else if (area.equals("Romania")){return Country.ROMANIASOCIALISTREPUBLICOF();
 155                 }else if (area.equals("Serbia")){return Country.SERBIAANDMONTENEGRO();
 156                 }else if (area.equals("Slovakia")){return Country.SLOVAKIA();
 157                 }else if (area.equals("Spain")){return Country.SPAINSPANISHSTATE();
 158
 159                 }else if (area.equals("Switzerland")){return Country.SWITZERLANDSWISSCONFEDERATION();
 160                 }else if (area.equals("Syria")){return Country.SYRIANARABREPUBLIC();
 161                 }else if (area.equals("Turkey")){return Country.TURKEYREPUBLICOF();
 162                 }else if (area.equals("Cambodia")){return Country.CAMBODIAKINGDOMOF();
 163                 }else if (area.equals("Bangladesh")){return Country.BANGLADESHPEOPLESREPUBLICOF();
 164
 165                 }else if (area.equals("Sri Lanka")){return Country.SRILANKADEMOCRATICSOCIALISTREPUBLICOF();
 166                 }else if (area.equals("Bahamas")){return Country.BAHAMASCOMMONWEALTHOFTHE();
 167                 }else if (area.equals("Western Samoa")){return Country.SAMOAINDEPENDENTSTATEOF();
 168                 }else if (area.equals("Finland")){return Country.FINLANDREPUBLICOF();
 169                 }else if (area.equals("Norway")){return Country.NORWAYKINGDOMOF();
 170                 }else if (area.equals("El Salvador")){return Country.ELSALVADORREPUBLICOF();
 171                 }else if (area.equals("Cyprus")){return Country.CYPRUSREPUBLICOF();
 172                 }else if (area.equals("Sweden")){return Country.SWEDENKINGDOMOF();
 173                 }else if (area.equals("Denmark")){return Country.DENMARKKINGDOMOF();
 174                 }else if (area.equals("Trinidad & Tobago")){return Country.TRINIDADANDTOBAGOREPUBLICOF();
 175                 }else if (area.equals("Chile")){return Country.CHILEREPUBLICOF();
 176                 }else if (area.equals("Jordan")){return Country.JORDANHASHEMITEKINGDOMOF();
 177                 }else if (area.equals("Montenegro")){
 178                         logger.warn("Montenegro is currently mapped to 'Serbia & Montenegro'");
 179                         return Country.SERBIAANDMONTENEGRO();
 180                 }else if (area.equals("Portugal")){return Country.PORTUGALPORTUGUESEREPUBLIC();
 181                 }else if (area.equals("Tunisia")){return Country.TUNISIAREPUBLICOF();
 182                 }else if (area.equals("Seychelles")){return Country.SEYCHELLESREPUBLICOF();
 183                 }else if (area.equals("Fiji")){return Country.FIJIREPUBLICOFTHEFIJIISLANDS();
 184                 }else if (area.equals("Belgium")){return Country.BELGIUMKINGDOMOF();
 185                 }else if (area.equals("Virgin Islands")){return Country.USVIRGINISLANDS();
 186                 }else if (area.equals("Gambia")){return Country.GAMBIAREPUBLICOFTHE();
 187                 }else if (area.equals("Dominica")){return Country.DOMINICACOMMONWEALTHOF();
 188                 }else if (area.equals("Liechtenstein")){return Country.LIECHTENSTEINPRINCIPALITYOF();
 189                 }else if (area.matches("B(y)?elarus")){return Country.BELARUS();
 190                 }else if (area.equals("Turkey")){return Country.TURKEYREPUBLICOF();
 191                 }else if (area.equals("Turkmenistan")){return Country.TURKMENISTAN();
 192
 193                 }else if (area.matches("United States: Alaska")){ return TdwgAreaProvider.getAreaByTdwgAbbreviation("ASK");
 194
 195
 196                 }else{
 197                         if (unhandledCountries.contains(area)){
 198                                 logger.warn("Unhandled country '" + area + "' replaced by null" );
 199                                 return null;
 200                         }
 201                         return null;
 202
 203                 }
 204
 205         }
 206
 207         /* (non-Javadoc)
 208          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String)
 209          */
 210         @Override
 211         public UUID getLanguageUuid(String key)
 212                         throws UndefinedTransformerMethodException {
 213                 return super.getLanguageUuid(key);
 214         }
 215
 216
 217
 218
 219
 220
 221         /* (non-Javadoc)
 222          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String)
 223          */
 224         @Override
 225         public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
 226                 if (key == null){return null;
 227                 }
 228                 return null;
 229         }
 230
 231         /* (non-Javadoc)
 232          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
 233          */
 234         @Override
 235         public UUID getExtensionTypeUuid(String key)
 236                         throws UndefinedTransformerMethodException {
 237                 if (key == null){return null;
 238                 }else if (key.equalsIgnoreCase("not available reason")){return uuidExtTypeNotAvailableReason;
 239 //              }else if (key.equalsIgnoreCase("recent + fossil")){return uuidRecentAndFossil;
 240 //              }else if (key.equalsIgnoreCase("fossil only")){return uuidFossilOnly;
 241                 }
 242                 return null;
 243         }
 244
 245         /* (non-Javadoc)
 246          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
 247          */
 248         @Override
 249         public UUID getMarkerTypeUuid(String key)
 250                         throws UndefinedTransformerMethodException {
 251                 if (key == null){return null;
 252                 }else if (key.equalsIgnoreCase("old record")){return uuidOldRecordMarkerType;
 253                 }else if (key.equalsIgnoreCase("checked")){return uuidCheckedMarkerType;
 254                 }else if (key.equalsIgnoreCase("not available")){return uuidNotAvailableMarkerType;
 255
 256                 }
 257                 return null;
 258         }
 259
 260
 261
 262         /* (non-Javadoc)
 263          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
 264          */
 265         @Override
 266         public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
 267                 if (StringUtils.isBlank(key)){return null;
 268                 }else if (key.equalsIgnoreCase("Distribution")){return Feature.DISTRIBUTION();
 269                 }else if (key.equalsIgnoreCase("Ecology")){return Feature.ECOLOGY();
 270                 }else if (key.equalsIgnoreCase("Diagnosis")){return Feature.DIAGNOSIS();
 271                 }else if (key.equalsIgnoreCase("Biology")){return Feature.BIOLOGY_ECOLOGY();
 272                 }else if (key.equalsIgnoreCase("Host")){return Feature.HOSTPLANT();
 273                 }else{
 274                         return null;
 275                 }
 276         }
 277
 278
 279
 280
 281 }