app-import/src/main/java/eu/etaxonomy/cdm/app/pesi/ErmsActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.pesi;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  17 import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.Source;
  24 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  26 import eu.etaxonomy.cdm.model.common.ISourceable;
  27 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  28 import eu.etaxonomy.cdm.model.name.ZoologicalName;
  29
  30
  31 /**
  32  * TODO add the following to a wiki page:
  33  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data base under another operation systen
  34  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  35  *
  36  *
  37  * @author a.mueller
  38  *
  39  */
  40 public class ErmsActivator {
  41         private static final Logger logger = Logger.getLogger(ErmsActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45         static final Source berlinModelSource = FaunaEuropaeaSources.PESI_ERMS();
  46         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_pesi_erms();
  47         static final UUID treeUuid = UUID.fromString("8bd27d84-fd4f-4bfa-bde0-3e6b7311b334");
  48         static final int sourceSecId = 500000;
  49         static final UUID featureTreeUuid = UUID.fromString("33cbf7a8-0c47-4d47-bd11-b7d77a38d0f6");
  50         static final Object[] featureKeyList = new Integer[]{1,4,5,10,11,12,13,14, 249, 250, 251, 252, 253};
  51
  52         //check - import
  53         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  54
  55
  56         //NomeclaturalCode
  57         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICZN;
  58
  59         //ignore null
  60         static final boolean ignoreNull = true;
  61
  62 // ***************** ALL ************************************************//
  63
  64         //authors
  65         static final boolean doAuthors = true;
  66         //references
  67         static final DO_REFERENCES doReferences =  DO_REFERENCES.CONCEPT_REFERENCES;
  68         //names
  69         static final boolean doTaxonNames = false;
  70         static final boolean doRelNames = true;
  71         static final boolean doNameStatus = true;
  72         static final boolean doTypes = true;
  73         static final boolean doNameFacts = true;
  74
  75         //taxa
  76         static final boolean doTaxa = true;
  77         static final boolean doRelTaxa = true;
  78         static final boolean doFacts = true;
  79         static final boolean doOccurences = false;
  80
  81
  82 //******************** NONE ***************************************//
  83
  84 //      //authors
  85 //      static final boolean doAuthors = true;
  86 //      //references
  87 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  88 //      //names
  89 //      static final boolean doTaxonNames = false;
  90 //      static final boolean doRelNames = false;
  91 //      static final boolean doNameStatus = false;
  92 //      static final boolean doTypes = false;
  93 //      static final boolean doNameFacts = false;
  94 //
  95 //      //taxa
  96 //      static final boolean doTaxa = true;
  97 //      static final boolean doRelTaxa = false;
  98 //      static final boolean doFacts = false;
  99 //      static final boolean doOccurences = false;
 100 //
 101
 102
 103         /**
 104          * @param args
 105          */
 106         public static void main(String[] args) {
 107                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
 108
 109                 //make BerlinModel Source
 110                 Source source = berlinModelSource;
 111                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 112
 113                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 114
 115                 bmImportConfigurator.setClassificationUuid(treeUuid);
 116                 bmImportConfigurator.setSourceSecId(sourceSecId);
 117                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 118
 119                 bmImportConfigurator.setIgnoreNull(ignoreNull);
 120                 bmImportConfigurator.setDoAuthors(doAuthors);
 121                 bmImportConfigurator.setDoReferences(doReferences);
 122                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 123                 bmImportConfigurator.setDoRelNames(doRelNames);
 124                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 125                 bmImportConfigurator.setDoTypes(doTypes);
 126                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 127
 128                 bmImportConfigurator.setDoTaxa(doTaxa);
 129                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 130                 bmImportConfigurator.setDoFacts(doFacts);
 131                 bmImportConfigurator.setDoOccurrence(doOccurences);
 132                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 133
 134                 bmImportConfigurator.setCheck(check);
 135
 136                 // invoke import
 137                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 138                 bmImport.invoke(bmImportConfigurator);
 139
 140                 if (bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 141                         CdmApplicationController app = bmImport.getCdmAppController();
 142                         ISourceable obj = app.getCommonService().getSourcedObjectByIdInSource(ZoologicalName.class, "1000027", null);
 143                         logger.info(obj);
 144
 145 //                      //make feature tree
 146 //                      FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 147 //                      app = bmImport.getCdmAppController();
 148 //                      app.getFeatureTreeService().saveOrUpdate(tree);
 149                 }
 150                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 151         }
 152
 153 }