app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/AlgaTerraActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.berlinModelImport;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.algaterra.AlgaTerraImportConfigurator;
  21 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  24 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
  26 import eu.etaxonomy.cdm.io.common.Source;
  27 import eu.etaxonomy.cdm.model.description.Feature;
  28 import eu.etaxonomy.cdm.model.description.FeatureNode;
  29 import eu.etaxonomy.cdm.model.description.FeatureTree;
  30 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  31
  32
  33 /**
  34  * TODO add the following to a wiki page:
  35  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  36  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  37  *
  38  *
  39  * @author a.mueller
  40  *
  41  */
  42 public class AlgaTerraActivator {
  43         private static final Logger logger = Logger.getLogger(AlgaTerraActivator.class);
  44
  45         //database validation status (create, update, validate ...)
  46         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  47         static final Source berlinModelSource = BerlinModelSources.AlgaTerra();
  48 //      static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  49 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_algaterra_preview();
  50         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
  51
  52
  53         static final UUID treeUuid = UUID.fromString("1f617402-78dc-4bf1-ac77-d260600a8879");
  54         static final int sourceSecId = 7331;
  55         static final UUID sourceRefUuid = UUID.fromString("7e1a2500-93a5-40c2-ba34-0213d7822379");
  56
  57         static final UUID featureTreeUuid = UUID.fromString("a970168a-36fd-4c7c-931e-87214a965c14");
  58         static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
  59
  60         //check - import
  61         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  62
  63         private boolean ignoreNull = true;
  64
  65         private boolean includeFlatClassifications = true;
  66
  67         private EDITOR editor = EDITOR.EDITOR_AS_EDITOR;
  68
  69         //NomeclaturalCode
  70         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;
  71
  72         static String factFilter = " factCategoryFk NOT IN (7, 202 ) ";
  73
  74
  75 // ****************** ALL *****************************************
  76
  77         //authors
  78         static final boolean doAuthors = true;
  79         //references
  80         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  81         //names
  82         static final boolean doTaxonNames = true;
  83         static final boolean doRelNames = true;
  84         static final boolean doNameStatus = true;
  85         static final boolean doTypes = true;
  86
  87         //taxa
  88         static final boolean doTaxa = true;
  89         static final boolean doRelTaxa = true;
  90         static final boolean doFacts = true;
  91
  92         //alga terra specific
  93         static final boolean ecoFacts = true;
  94         static final boolean doImages = true;
  95
  96 // ************************ NONE **************************************** //
  97
  98 //      //authors
  99 //      static final boolean doAuthors = false;
 100 //      //references
 101 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
 102 //      //names
 103 //      static final boolean doTaxonNames = false;
 104 //      static final boolean doRelNames = false;
 105 //      static final boolean doNameStatus = false;
 106 //      static final boolean doTypes = true;
 107 //      static final boolean doNameFacts = false;
 108 //
 109 //      //taxa
 110 //      static final boolean doTaxa = false;
 111 //      static final boolean doRelTaxa = false;
 112 //      static final boolean doFacts = false;
 113 //
 114 //  //alga terra specific
 115 //      static final boolean ecoFacts = true;
 116 //      static final boolean doImages = true;
 117
 118
 119         public void invoke(String[] args){
 120                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
 121                 logger.debug("Start");
 122                 //make BerlinModel Source
 123                 Source source = berlinModelSource;
 124                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 125
 126                 AlgaTerraImportConfigurator config = AlgaTerraImportConfigurator.NewInstance(source,  destination);
 127
 128                 config.setClassificationUuid(treeUuid);
 129                 config.setSourceSecId(sourceSecId);
 130                 config.setNomenclaturalCode(nomenclaturalCode);
 131
 132                 config.setDoAuthors(doAuthors);
 133                 config.setDoReferences(doReferences);
 134                 config.setDoTaxonNames(doTaxonNames);
 135                 config.setDoRelNames(doRelNames);
 136                 config.setDoNameStatus(doNameStatus);
 137                 config.setDoTypes(doTypes);
 138
 139                 config.setDoTaxa(doTaxa);
 140                 config.setDoRelTaxa(doRelTaxa);
 141                 config.setDoFacts(doFacts);
 142                 config.setDoEcoFacts(ecoFacts);
 143                 config.setDoImages(doImages);
 144
 145                 config.setSourceRefUuid(sourceRefUuid);
 146                 config.setIgnoreNull(ignoreNull);
 147
 148                 config.setIncludeFlatClassifications(includeFlatClassifications);
 149                 config.setFactFilter(factFilter);
 150
 151                 config.setDbSchemaValidation(hbm2dll);
 152
 153                 config.setCheck(check);
 154                 config.setEditor(editor);
 155
 156                 // invoke import
 157                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 158                 bmImport.invoke(config);
 159
 160                 if (doFacts && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){
 161                         ICdmApplicationConfiguration app = bmImport.getCdmAppController();
 162
 163                         //make feature tree
 164                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, config.getFeatureMap(), featureKeyList);
 165                         FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 166                         tree.getRoot().addChild(imageNode);
 167                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 168                         tree.getRoot().addChild(distributionNode, 2);
 169                         app.getFeatureTreeService().saveOrUpdate(tree);
 170                 }
 171
 172
 173                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 174         }
 175
 176
 177         /**
 178          * @param args
 179          */
 180         public static void main(String[] args) {
 181                 AlgaTerraActivator activator = new AlgaTerraActivator();
 182                 activator.invoke(args);
 183         }
 184
 185 }