app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisTransformer.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2007 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10
  11 package eu.etaxonomy.cdm.io.globis;
  12
  13 import java.util.HashSet;
  14 import java.util.Set;
  15 import java.util.UUID;
  16
  17 import org.apache.commons.lang.StringUtils;
  18 import org.apache.log4j.Logger;
  19
  20 import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
  21 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  22 import eu.etaxonomy.cdm.model.common.ExtensionType;
  23 import eu.etaxonomy.cdm.model.description.Feature;
  24 import eu.etaxonomy.cdm.model.location.NamedArea;
  25 import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;
  26 import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
  27
  28 /**
  29  * @author a.mueller
  30  * @created 01.03.2010
  31  * @version 1.0
  32  */
  33 public final class GlobisTransformer extends InputTransformerBase {
  34         private static final Logger logger = Logger.getLogger(GlobisTransformer.class);
  35
  36
  37         //extension types
  38 //      public static final UUID uuidEditor = UUID.fromString("07752659-3018-4880-bf26-41bb396fbf37");
  39
  40
  41         //language uuids
  42
  43
  44
  45
  46
  47         /* (non-Javadoc)
  48          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusByKey(java.lang.String)
  49          */
  50         @Override
  51         public NameTypeDesignationStatus getNameTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
  52                 if (key == null){
  53                         return null;
  54                 }
  55                 Integer intDesignationId = Integer.valueOf(key);
  56                 switch (intDesignationId){
  57                         case 1: return NameTypeDesignationStatus.ORIGINAL_DESIGNATION();
  58                         case 2: return NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION();
  59                         case 3: return NameTypeDesignationStatus.MONOTYPY();
  60                         default:
  61                                 String warning = "Unknown name type designation status id " + key;
  62                                 logger.warn(warning);
  63                                 return null;
  64                 }
  65         }
  66
  67
  68
  69
  70         /* (non-Javadoc)
  71          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusUuid(java.lang.String)
  72          */
  73         @Override
  74         public UUID getNameTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
  75                 //nott needed
  76                 return super.getNameTypeDesignationStatusUuid(key);
  77         }
  78
  79
  80         public NamedArea getNamedAreaByKey(String area)  {
  81                 Set<String> unhandledCountries = new HashSet<String>();
  82
  83                 if (StringUtils.isBlank(area)){return null;
  84                 }else if (area.equals("Argentina")){return WaterbodyOrCountry.ARGENTINAARGENTINEREPUBLIC();
  85                 }else if (area.equals("Bolivia")){return WaterbodyOrCountry.BOLIVIAREPUBLICOF();
  86                 }else if (area.equals("Ghana")){return WaterbodyOrCountry.GHANAREPUBLICOF();
  87                 }else if (area.equals("Angola")){return WaterbodyOrCountry.ANGOLAREPUBLICOF();
  88                 }else if (area.equals("Tanzania")){return WaterbodyOrCountry.TANZANIAUNITEDREPUBLICOF();
  89                 }else if (area.equals("China")){return WaterbodyOrCountry.CHINAPEOPLESREPUBLICOF();
  90                 }else if (area.equals("Brunei")){return WaterbodyOrCountry.BRUNEIDARUSSALAM();
  91                 }else if (area.equals("Australia")){return WaterbodyOrCountry.AUSTRALIACOMMONWEALTHOF();
  92                 }else if (area.equals("Indonesia")){return WaterbodyOrCountry.INDONESIAREPUBLICOF();
  93                 }else if (area.equals("Philippines")){return WaterbodyOrCountry.PHILIPPINESREPUBLICOFTHE();
  94                 }else if (area.equals("Mongolia")){return WaterbodyOrCountry.MONGOLIAMONGOLIANPEOPLESREPUBLIC();
  95                 }else if (area.equals("Russia")){return WaterbodyOrCountry.RUSSIANFEDERATION();
  96                 }else if (area.equals("France")){return WaterbodyOrCountry.FRANCEFRENCHREPUBLIC();
  97                 }else if (area.equals("Poland")){return WaterbodyOrCountry.POLANDPOLISHPEOPLESREPUBLIC();
  98                 }else if (area.equals("Brazil")){return WaterbodyOrCountry.BRAZILFEDERATIVEREPUBLICOF();
  99
 100                 }else if (area.equals("Cuba")){return WaterbodyOrCountry.BRAZILFEDERATIVEREPUBLICOF();
 101                 }else if (area.equals("Guatemala")){return WaterbodyOrCountry.GUATEMALAREPUBLICOF();
 102                 }else if (area.equals("Colombia")){return WaterbodyOrCountry.COLOMBIAREPUBLICOF();
 103                 }else if (area.equals("India")){return WaterbodyOrCountry.INDIAREPUBLICOF();
 104
 105                 }else if (area.equals("Mexico")){return WaterbodyOrCountry.MEXICOUNITEDMEXICANSTATES();
 106                 }else if (area.equals("Peru")){return WaterbodyOrCountry.PERUREPUBLICOF();
 107                 }else if (area.equals("Ecuador")){return WaterbodyOrCountry.ECUADORREPUBLICOF();
 108                 }else if (area.equals("Venezuela")){return WaterbodyOrCountry.VENEZUELABOLIVARIANREPUBLICOF();
 109                 }else if (area.equals("Guyana")){return WaterbodyOrCountry.GUYANAREPUBLICOF();
 110                 }else if (area.equals("Panama")){return WaterbodyOrCountry.PANAMAREPUBLICOF();
 111
 112                 }else if (area.equals("Paraguay")){return WaterbodyOrCountry.PARAGUAYREPUBLICOF();
 113                 }else if (area.equals("Suriname")){return WaterbodyOrCountry.SURINAMEREPUBLICOF();
 114                 }else if (area.equals("Costa Rica")){return WaterbodyOrCountry.COSTARICAREPUBLICOF();
 115                 }else if (area.equals("Ivory Coast")){return WaterbodyOrCountry.COTEDIVOIREIVORYCOASTREPUBLICOFTHE();
 116
 117                 }else if (area.equals("Benin")){return WaterbodyOrCountry.BENINPEOPLESREPUBLICOF();
 118                 }else if (area.equals("Kenya")){return WaterbodyOrCountry.KENYAREPUBLICOF();
 119                 }else if (area.equals("Uganda")){return WaterbodyOrCountry.UGANDAREPUBLICOF();
 120                 }else if (area.equals("Zambia")){return WaterbodyOrCountry.ZAMBIAREPUBLICOF();
 121                 }else if (area.equals("Rwanda")){return WaterbodyOrCountry.RWANDARWANDESEREPUBLIC();
 122                 }else if (area.equals("South Africa")){return WaterbodyOrCountry.SOUTHAFRICAREPUBLICOF();
 123                 }else if (area.equals("Botswana")){return WaterbodyOrCountry.BOTSWANAREPUBLICOF();
 124                 }else if (area.equals("Burundi")){return WaterbodyOrCountry.BURUNDIREPUBLICOF();
 125                 }else if (area.equals("Cameroon")){return WaterbodyOrCountry.CAMEROONUNITEDREPUBLICOF();
 126
 127                 }else if (area.equals("Congo")){return WaterbodyOrCountry.CONGOPEOPLESREPUBLICOF();
 128                 }else if (area.equals("Zaire")){return WaterbodyOrCountry.CONGODEMOCRATICREPUBLICOF();
 129                 }else if (area.equals("Equatorial Guinea")){return WaterbodyOrCountry.EQUATORIALGUINEAREPUBLICOF();
 130                 }else if (area.equals("Gabon")){return WaterbodyOrCountry.GABONGABONESEREPUBLIC();
 131                 }else if (area.equals("Liberia")){return WaterbodyOrCountry.LIBERIAREPUBLICOF();
 132
 133                 }else if (area.equals("Togo")){return WaterbodyOrCountry.TOGOTOGOLESEREPUBLIC();
 134 //              }else if (area.equals("Guinea")){return WaterbodyOrCountry.Guinea();
 135                 }else if (area.equals("Malawi")){return WaterbodyOrCountry.MALAWIREPUBLICOF();
 136                 }else if (area.equals("Mozambique")){return WaterbodyOrCountry.MOZAMBIQUEPEOPLESREPUBLICOF();
 137                 }else if (area.equals("Nigeria")){return WaterbodyOrCountry.NIGERIAFEDERALREPUBLICOF();
 138                 }else if (area.equals("Senegal")){return WaterbodyOrCountry.SENEGALREPUBLICOF();
 139                 }else if (area.equals("Sierra Leone")){return WaterbodyOrCountry.SIERRALEONEREPUBLICOF();
 140                 }else if (area.equals("Sudan")){return WaterbodyOrCountry.SUDANDEMOCRATICREPUBLICOFTHE();
 141                 }else if (area.equals("Madagascar")){return WaterbodyOrCountry.MADAGASCARREPUBLICOF();
 142                 }else if (area.equals("Comoros")){return WaterbodyOrCountry.COMOROSUNIONOFTHE();
 143
 144                 }else if (area.equals("Vietnam")){return WaterbodyOrCountry.VIETNAMSOCIALISTREPUBLICOF();
 145                 }else if (area.equals("Thailand")){return WaterbodyOrCountry.THAILANDKINGDOMOF();
 146                 }else if (area.equals("Bhutan")){return WaterbodyOrCountry.BHUTANKINGDOMOF();
 147                 }else if (area.equals("Laos")){return WaterbodyOrCountry.LAOPEOPLESDEMOCRATICREPUBLIC();
 148                 }else if (area.equals("Myanmar (Burma)")){return WaterbodyOrCountry.MYANMAR();
 149                 }else if (area.equals("Nepal")){return WaterbodyOrCountry.NEPALKINGDOMOF();
 150                 }else if (area.equals("Pakistan")){return WaterbodyOrCountry.PAKISTANISLAMICREPUBLICOF();
 151                 }else if (area.equals("Singapore")){return WaterbodyOrCountry.SINGAPOREREPUBLICOF();
 152
 153                 }else if (area.equals("Honduras")){return WaterbodyOrCountry.HONDURASREPUBLICOF();
 154                 }else if (area.equals("Nicaragua")){return WaterbodyOrCountry.NICARAGUAREPUBLICOF();
 155                 }else if (area.equals("Trinidad and Tobago")){return WaterbodyOrCountry.TRINIDADANDTOBAGOREPUBLICOF();
 156                 }else if (area.equals("United States")){return WaterbodyOrCountry.UNITEDSTATESOFAMERICA();
 157                 }else if (area.equals("Uruguay")){return WaterbodyOrCountry.URUGUAYEASTERNREPUBLICOF();
 158                 }else if (area.equals("Haiti")){return WaterbodyOrCountry.HAITIREPUBLICOF();
 159                 }else if (area.equals("North Korea")){return WaterbodyOrCountry.KOREADEMOCRATICPEOPLESREPUBLICOF();
 160                 }else if (area.equals("South Korea")){return WaterbodyOrCountry.KOREAREPUBLICOF();
 161                 }else if (area.equals("Taiwan")){return WaterbodyOrCountry.TAIWANPROVINCEOFCHINA();
 162
 163                 }else if (area.equals("Somalia")){return WaterbodyOrCountry.SOMALIASOMALIREPUBLIC();
 164                 }else if (area.equals("Albania")){return WaterbodyOrCountry.ALBANIAPEOPLESSOCIALISTREPUBLICOF();
 165                 }else if (area.equals("Algeria")){return WaterbodyOrCountry.ALGERIAPEOPLESDEMOCRATICREPUBLICOF();
 166
 167                 }else if (area.equals("Andorra")){return WaterbodyOrCountry.ANDORRAPRINCIPALITYOF();
 168                 }else if (area.equals("Austria")){return WaterbodyOrCountry.AUSTRIAREPUBLICOF();
 169                 }else if (area.equals("Azerbaijan")){return WaterbodyOrCountry.AZERBAIJANREPUBLICOF();
 170                 }else if (area.equals("Bulgaria")){return WaterbodyOrCountry.BULGARIAPEOPLESREPUBLICOF();
 171 //              }else if (area.equals("Croatia")){return WaterbodyOrCountry.Croatia();
 172                 }else if (area.equals("Greece")){return WaterbodyOrCountry.GREECEHELLENICREPUBLIC();
 173                 }else if (area.equals("Hungary")){return WaterbodyOrCountry.HUNGARYHUNGARIANPEOPLESREPUBLIC();
 174
 175                 }else if (area.equals("Iran")){return WaterbodyOrCountry.IRANISLAMICREPUBLICOF();
 176                 }else if (area.equals("Iraq")){return WaterbodyOrCountry.IRAQREPUBLICOF();
 177                 }else if (area.equals("Israel")){return WaterbodyOrCountry.ISRAELSTATEOF();
 178                 }else if (area.equals("Italy")){return WaterbodyOrCountry.ITALYITALIANREPUBLIC();
 179                 }else if (area.equals("Kazakhstan")){return WaterbodyOrCountry.KAZAKHSTANREPUBLICOF();
 180                 }else if (area.equals("Kyrgyzstan")){return WaterbodyOrCountry.KYRGYZREPUBLIC();
 181                 }else if (area.equals("Lebanon")){return WaterbodyOrCountry.LEBANONLEBANESEREPUBLIC();
 182
 183                 }else if (area.equals("Luxembourg")){return WaterbodyOrCountry.LUXEMBOURGGRANDDUCHYOF();
 184                 }else if (area.equals("Macedonia")){return WaterbodyOrCountry.MACEDONIATHEFORMERYUGOSLAVREPUBLICOF();
 185                 }else if (area.equals("Moldova")){return WaterbodyOrCountry.MOLDOVAREPUBLICOF();
 186                 }else if (area.equals("Morocco")){return WaterbodyOrCountry.MOROCCOKINGDOMOF();
 187                 }else if (area.equals("Romania")){return WaterbodyOrCountry.ROMANIASOCIALISTREPUBLICOF();
 188                 }else if (area.equals("Serbia")){return WaterbodyOrCountry.SERBIAANDMONTENEGRO();
 189                 }else if (area.equals("Slovakia")){return WaterbodyOrCountry.SLOVAKIA();
 190                 }else if (area.equals("Spain")){return WaterbodyOrCountry.SPAINSPANISHSTATE();
 191
 192                 }else if (area.equals("Switzerland")){return WaterbodyOrCountry.SWITZERLANDSWISSCONFEDERATION();
 193                 }else if (area.equals("Syria")){return WaterbodyOrCountry.SYRIANARABREPUBLIC();
 194                 }else if (area.equals("Turkey")){return WaterbodyOrCountry.TURKEYREPUBLICOF();
 195                 }else if (area.equals("Cambodia")){return WaterbodyOrCountry.CAMBODIAKINGDOMOF();
 196                 }else if (area.equals("Bangladesh")){return WaterbodyOrCountry.BANGLADESHPEOPLESREPUBLICOF();
 197
 198                 }else if (area.equals("Sri Lanka")){return WaterbodyOrCountry.SRILANKADEMOCRATICSOCIALISTREPUBLICOF();
 199                 }else if (area.equals("Bahamas")){return WaterbodyOrCountry.BAHAMASCOMMONWEALTHOFTHE();
 200 //              }else if (area.equals("Western Samoa")){return WaterbodyOrCountry.WESTERNSAMOA();
 201                 }else if (area.equals("Finland")){return WaterbodyOrCountry.FINLANDREPUBLICOF();
 202                 }else if (area.equals("Norway")){return WaterbodyOrCountry.NORWAYKINGDOMOF();
 203                 }else if (area.equals("El Salvador")){return WaterbodyOrCountry.ELSALVADORREPUBLICOF();
 204                 }else if (area.equals("Cyprus")){return WaterbodyOrCountry.CYPRUSREPUBLICOF();
 205
 206
 207                 }else{
 208                         if (unhandledCountries.contains(area)){
 209 //                              logger.warn("Unhandled country '" + area + "' replaced by null" );
 210                                 return null;
 211                         }
 212 //                      String warning = "New language abbreviation " + area;
 213 //                      logger.warn(warning);
 214                         return null;
 215 //                      throw new IllegalArgumentException(warning);
 216                 }
 217
 218
 219
 220         }
 221
 222         /* (non-Javadoc)
 223          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String)
 224          */
 225         @Override
 226         public UUID getLanguageUuid(String key)
 227                         throws UndefinedTransformerMethodException {
 228                 return super.getLanguageUuid(key);
 229         }
 230
 231
 232
 233
 234
 235
 236         /* (non-Javadoc)
 237          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String)
 238          */
 239         @Override
 240         public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
 241                 if (key == null){return null;
 242                 }
 243                 return null;
 244         }
 245
 246         /* (non-Javadoc)
 247          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
 248          */
 249         @Override
 250         public UUID getExtensionTypeUuid(String key)
 251                         throws UndefinedTransformerMethodException {
 252                 if (key == null){return null;
 253 //              }else if (key.equalsIgnoreCase("recent only")){return uuidRecentOnly;
 254 //              }else if (key.equalsIgnoreCase("recent + fossil")){return uuidRecentAndFossil;
 255 //              }else if (key.equalsIgnoreCase("fossil only")){return uuidFossilOnly;
 256                 }
 257                 return null;
 258         }
 259
 260
 261
 262         /* (non-Javadoc)
 263          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
 264          */
 265         @Override
 266         public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
 267                 if (StringUtils.isBlank(key)){return null;
 268                 }else if (key.equalsIgnoreCase("Distribution")){return Feature.DISTRIBUTION();
 269                 }else if (key.equalsIgnoreCase("Ecology")){return Feature.ECOLOGY();
 270                 }else if (key.equalsIgnoreCase("Diagnosis")){return Feature.DIAGNOSIS();
 271                 }else if (key.equalsIgnoreCase("Biology")){return Feature.BIOLOGY_ECOLOGY();
 272                 }else if (key.equalsIgnoreCase("Host")){return Feature.HOSTPLANT();
 273                 }else{
 274                         return null;
 275                 }
 276         }
 277
 278
 279
 280
 281 }