app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/NepenthesIdentifierActivator.java

   1 /**
   2 * Copyright (C) 2015 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.app.caryophyllales;
  10
  11 import java.io.File;
  12 import java.io.FileReader;
  13 import java.io.IOException;
  14 import java.io.InputStreamReader;
  15
  16 import org.apache.log4j.Logger;
  17
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.common.CdmUtils;
  20 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  21 import eu.etaxonomy.cdm.database.ICdmDataSource;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  24 import eu.etaxonomy.cdm.io.identifier.IdentifierImportConfigurator;
  25 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  26 import eu.etaxonomy.cdm.model.name.TaxonName;
  27
  28 /**
  29  * @author a.mueller
  30  * @since 25.03.2017
  31  *
  32  */
  33 public class NepenthesIdentifierActivator {
  34
  35     @SuppressWarnings("unused")
  36     private static final Logger logger = Logger.getLogger(NepenthesIdentifierActivator.class);
  37
  38     //database validation status (create, update, validate ...)
  39     static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;
  40
  41 //    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  42     static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_caryophyllales_nepenthaceae();
  43
  44     //check - import
  45     static CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  46
  47     private void doImport(ICdmDataSource cdmDestination){
  48
  49         InputStreamReader source = getNepenthesIdentifier();
  50         IdentifierImportConfigurator config= IdentifierImportConfigurator.NewInstance(source, cdmDestination);
  51         config.setDbSchemaValidation(dbSchemaValidation);
  52         config.setIdentifierTypeUuid(DefinedTerm.uuidWfoNameIdentifier);
  53         config.setCdmClass(TaxonName.class);
  54         config.setCheck(check);
  55
  56         CdmDefaultImport<IdentifierImportConfigurator> myImport = new CdmDefaultImport<>();
  57         myImport.invoke(config);
  58
  59     }
  60
  61     private InputStreamReader getNepenthesIdentifier() {
  62         String filename = "WfoIds.csv";
  63
  64 //        URI.create("file:////BGBM-PESIHPC/FloraMalesianaXml/fmvol14_final2.xml")
  65         String path = "C://opt//data//Caryophyllales";
  66         File file = new File(path + CdmUtils.getFolderSeperator() + filename);
  67         if (!file.exists()){
  68             System.exit(-1);
  69             return null;
  70         }
  71         try {
  72             InputStreamReader input = new FileReader(file);
  73             return input;
  74         } catch (IOException e) {
  75             e.printStackTrace();
  76             System.exit(-1);
  77             return null;
  78         }
  79     }
  80
  81
  82     /**
  83      * @param args
  84      */
  85     public static void main(String[] args) {
  86         NepenthesIdentifierActivator me = new NepenthesIdentifierActivator();
  87         me.doImport(cdmDestination);
  88         System.exit(0);
  89     }
  90 }