app-import/src/main/java/eu/etaxonomy/cdm/app/synthesysImport/SpecimenImport.java

   1 /**
   2  * Copyright (C) 2007 EDIT
   3  * European Distributed Institute of Taxonomy
   4  * http://www.e-taxonomy.eu
   5  *
   6  * The contents of this file are subject to the Mozilla Public License Version 1.1
   7  * See LICENSE.TXT at the top of this package for the full license terms.
   8  */
   9
  10 package eu.etaxonomy.cdm.app.synthesysImport;
  11 import java.net.URI;
  12 import java.net.URISyntaxException;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  17 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  18 import eu.etaxonomy.cdm.database.ICdmDataSource;
  19 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  20 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  21 import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator;
  22
  23 public class SpecimenImport {
  24 private static Logger logger = Logger.getLogger(SpecimenImport.class);
  25
  26         //database validation status (create, update, validate ...)
  27         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  28         final static String excelSource = "/home/patricia/Desktop/CDMtabular6493890c4d_18_11_08.xls";
  29 //      final static String xmlSource = "C:\\localCopy\\eclipse\\cdmlib\\app-import\\src\\main\\resources\\specimenABCD\\CDMtabular9c04a474e2_23_09_08.xls";
  30
  31
  32         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_patricia();
  33         //check - import
  34         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  35
  36         /**
  37          * @param args
  38          */
  39         public static void main(String[] args) {
  40                 URI source;
  41                 try {
  42                         source = new URI(excelSource);
  43                         System.out.println(source);
  44                         System.out.println("Start import from  Synthesys Specimen data("+ source.toString() + ") ...");
  45
  46                         ICdmDataSource destination = cdmDestination;
  47                         SpecimenSynthesysExcelImportConfigurator specimenImportConfigurator = SpecimenSynthesysExcelImportConfigurator.NewInstance(source,  destination);
  48
  49                         specimenImportConfigurator.setSourceSecId("specimen");
  50                         specimenImportConfigurator.setCheck(check);
  51                         specimenImportConfigurator.setDbSchemaValidation(hbm2dll);
  52                         specimenImportConfigurator.setDoAutomaticParsing(true);
  53                         specimenImportConfigurator.setReUseExistingMetadata(true);
  54                         specimenImportConfigurator.setReUseTaxon(true);
  55                         specimenImportConfigurator.setSourceReference(null);
  56                         specimenImportConfigurator.setTaxonReference(null);
  57
  58                         // invoke import
  59                         CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator> specimenImport = new CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator>();
  60                         //new Test().invoke(tcsImportConfigurator);
  61                         specimenImport.invoke(specimenImportConfigurator);
  62                         System.out.println("End import from SpecimenData ("+ source.toString() + ")...");
  63                 } catch (URISyntaxException e) {
  64                         e.printStackTrace();
  65                 }
  66
  67         }
  68
  69 }