2 * Copyright (C) 2007 EDIT
3 * European Distributed Institute of Taxonomy
4 * http://www.e-taxonomy.eu
6 * The contents of this file are subject to the Mozilla Public License Version 1.1
7 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.cdm
.app
.berlinModelImport
;
12 import java
.util
.UUID
;
14 import org
.apache
.log4j
.Logger
;
16 import eu
.etaxonomy
.cdm
.api
.application
.ICdmApplicationConfiguration
;
17 import eu
.etaxonomy
.cdm
.app
.common
.CdmDestinations
;
18 import eu
.etaxonomy
.cdm
.database
.DbSchemaValidation
;
19 import eu
.etaxonomy
.cdm
.database
.ICdmDataSource
;
20 import eu
.etaxonomy
.cdm
.io
.algaterra
.AlgaTerraImportConfigurator
;
21 import eu
.etaxonomy
.cdm
.io
.berlinModel
.in
.BerlinModelImportConfigurator
;
22 import eu
.etaxonomy
.cdm
.io
.common
.CdmDefaultImport
;
23 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
.CHECK
;
24 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
.DO_REFERENCES
;
25 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
.EDITOR
;
26 import eu
.etaxonomy
.cdm
.io
.common
.Source
;
27 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
28 import eu
.etaxonomy
.cdm
.model
.description
.FeatureNode
;
29 import eu
.etaxonomy
.cdm
.model
.description
.FeatureTree
;
30 import eu
.etaxonomy
.cdm
.model
.name
.NomenclaturalCode
;
34 * TODO add the following to a wiki page:
35 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
36 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
42 public class AlgaTerraActivator
{
43 private static final Logger logger
= Logger
.getLogger(AlgaTerraActivator
.class);
45 //database validation status (create, update, validate ...)
46 static DbSchemaValidation hbm2dll
= DbSchemaValidation
.CREATE
;
47 static final Source berlinModelSource
= BerlinModelSources
.AlgaTerra();
48 static final ICdmDataSource cdmDestination
= CdmDestinations
.localH2();
49 // static final ICdmDataSource cdmDestination = CdmDestinations.cdm_algaterra_preview();
50 // static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
53 static final UUID treeUuid
= UUID
.fromString("1f617402-78dc-4bf1-ac77-d260600a8879");
54 static final int sourceSecId
= 7331;
55 static final UUID sourceRefUuid
= UUID
.fromString("7e1a2500-93a5-40c2-ba34-0213d7822379");
57 static final UUID featureTreeUuid
= UUID
.fromString("a970168a-36fd-4c7c-931e-87214a965c14");
58 static final Object
[] featureKeyList
= new Integer
[]{7,201,202,203,204,205,206,207};
61 static final CHECK check
= CHECK
.IMPORT_WITHOUT_CHECK
;
63 private boolean ignoreNull
= true;
65 private boolean includeFlatClassifications
= true;
66 private boolean includeAllNonMisappliedRelatedClassifications
= true;
68 private EDITOR editor
= EDITOR
.EDITOR_AS_EDITOR
;
71 static final NomenclaturalCode nomenclaturalCode
= NomenclaturalCode
.ICBN
;
73 static String factFilter
= " factCategoryFk NOT IN (7, 202, 1000 ) ";
76 // ****************** ALL *****************************************
79 static final boolean doAuthors
= true;
81 static final DO_REFERENCES doReferences
= DO_REFERENCES
.ALL
;
83 static final boolean doTaxonNames
= true;
84 static final boolean doRelNames
= true;
85 static final boolean doNameStatus
= true;
86 static final boolean doTypes
= true;
89 static final boolean doTaxa
= true;
90 static final boolean doRelTaxa
= true;
91 static final boolean doFacts
= true;
94 static final boolean ecoFacts
= true;
95 static final boolean doFactEcology
= true;
96 static final boolean doImages
= true;
98 // ************************ NONE **************************************** //
101 // static final boolean doAuthors = false;
103 // static final DO_REFERENCES doReferences = DO_REFERENCES.ALL;
105 // static final boolean doTaxonNames = false;
106 // static final boolean doRelNames = false;
107 // static final boolean doNameStatus = false;
108 // static final boolean doTypes = false;
109 // static final boolean doNameFacts = false;
112 // static final boolean doTaxa = true;
113 // static final boolean doRelTaxa = true;
114 // static final boolean doFacts = false;
116 // //alga terra specific
117 // static final boolean ecoFacts = false;
118 // static final boolean doFactEcology = false;
119 // static final boolean doImages = false;
122 public void invoke(String
[] args
){
123 System
.out
.println("Start import from BerlinModel("+ berlinModelSource
.getDatabase() + ") ...");
124 logger
.debug("Start");
125 //make BerlinModel Source
126 Source source
= berlinModelSource
;
127 ICdmDataSource destination
= CdmDestinations
.chooseDestination(args
) != null ? CdmDestinations
.chooseDestination(args
) : cdmDestination
;
129 AlgaTerraImportConfigurator config
= AlgaTerraImportConfigurator
.NewInstance(source
, destination
);
131 config
.setClassificationUuid(treeUuid
);
132 config
.setSourceSecId(sourceSecId
);
133 config
.setNomenclaturalCode(nomenclaturalCode
);
135 config
.setDoAuthors(doAuthors
);
136 config
.setDoReferences(doReferences
);
137 config
.setDoTaxonNames(doTaxonNames
);
138 config
.setDoRelNames(doRelNames
);
139 config
.setDoNameStatus(doNameStatus
);
140 config
.setDoTypes(doTypes
);
142 config
.setDoTaxa(doTaxa
);
143 config
.setDoRelTaxa(doRelTaxa
);
144 config
.setDoFacts(doFacts
);
145 config
.setDoEcoFacts(ecoFacts
);
146 config
.setDoImages(doImages
);
147 config
.setDoFactEcology(doFactEcology
);
149 config
.setSourceRefUuid(sourceRefUuid
);
150 config
.setIgnoreNull(ignoreNull
);
152 config
.setIncludeFlatClassifications(includeFlatClassifications
);
153 config
.setIncludeAllNonMisappliedRelatedClassifications(includeAllNonMisappliedRelatedClassifications
);
154 config
.setFactFilter(factFilter
);
156 config
.setDbSchemaValidation(hbm2dll
);
158 config
.setCheck(check
);
159 config
.setEditor(editor
);
162 CdmDefaultImport
<BerlinModelImportConfigurator
> bmImport
= new CdmDefaultImport
<BerlinModelImportConfigurator
>();
163 bmImport
.invoke(config
);
165 if (doFacts
&& (config
.getCheck().equals(CHECK
.CHECK_AND_IMPORT
) || config
.getCheck().equals(CHECK
.IMPORT_WITHOUT_CHECK
) ) ){
166 ICdmApplicationConfiguration app
= bmImport
.getCdmAppController();
169 FeatureTree tree
= TreeCreator
.flatTree(featureTreeUuid
, config
.getFeatureMap(), featureKeyList
);
170 FeatureNode imageNode
= FeatureNode
.NewInstance(Feature
.IMAGE());
171 tree
.getRoot().addChild(imageNode
);
172 FeatureNode distributionNode
= FeatureNode
.NewInstance(Feature
.DISTRIBUTION());
173 tree
.getRoot().addChild(distributionNode
, 2);
174 app
.getFeatureTreeService().saveOrUpdate(tree
);
178 System
.out
.println("End import from BerlinModel ("+ source
.getDatabase() + ")...");
185 public static void main(String
[] args
) {
186 AlgaTerraActivator activator
= new AlgaTerraActivator();
187 activator
.invoke(args
);