app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTMooseActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.berlinModelImport;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  24 import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
  25 import eu.etaxonomy.cdm.io.common.Source;
  26 import eu.etaxonomy.cdm.model.description.Feature;
  27 import eu.etaxonomy.cdm.model.description.FeatureNode;
  28 import eu.etaxonomy.cdm.model.description.FeatureTree;
  29 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  30
  31
  32 /**
  33  * TODO add the following to a wiki page:
  34  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  35  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  36  *
  37  *
  38  * @author a.mueller
  39  *
  40  */
  41 public class MTMooseActivator {
  42         private static final Logger logger = Logger.getLogger(AlgaTerraActivator.class);
  43
  44         //database validation status (create, update, validate ...)
  45         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  46         static final Source berlinModelSource = BerlinModelSources.MT_MOOSE();
  47
  48 //      static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  49 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_mt_moose();
  50 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_moose();
  51         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
  52
  53         static final UUID classificationUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
  54         static final UUID sourceRefUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
  55
  56 //      static final UUID featureTreeUuid = UUID.fromString("4c5b5bbe-6fef-4607-96b2-1b0104eac19e");
  57 //      static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
  58
  59         static final boolean includeFlatClassifications = true;
  60
  61
  62         //check - import
  63         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  64
  65
  66         //NomenclaturalCode
  67         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICNAFP;
  68
  69         static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;
  70
  71 // ****************** ALL *****************************************
  72
  73         //authors
  74         static final boolean doAuthors = true;
  75         //references
  76         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  77         //names
  78         static final boolean doTaxonNames = true;
  79         static final boolean doRelNames = true;
  80         static final boolean doNameStatus = true;
  81         static final boolean doTypes = true;
  82         static final boolean doNameFacts = false;   //no name facts exist
  83
  84         //taxa
  85         static final boolean doTaxa = true;
  86         static final boolean doRelTaxa = true;
  87         static final boolean doFacts = false;    //no facts exist
  88         static final boolean doOccurences = false;   //no occurrences exist
  89         static final boolean doCommonNames = false;  //no common names exist
  90
  91 // ************************ NONE **************************************** //
  92
  93 //      //authors
  94 //      static final boolean doAuthors = false;
  95 //      //references
  96 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  97 //      //names
  98 //      static final boolean doTaxonNames = false;
  99 //      static final boolean doRelNames = false;
 100 //      static final boolean doNameStatus = false;
 101 //      static final boolean doTypes = false;
 102 //      static final boolean doNameFacts = false;
 103 //
 104 //      //taxa
 105 //      static final boolean doTaxa = false;
 106 //      static final boolean doRelTaxa = false;
 107 //      static final boolean doFacts = false;
 108 //      static final boolean doOccurences = false;
 109 //      static final boolean doCommonNames = false;
 110
 111
 112         public void invoke(String[] args){
 113                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
 114                 logger.debug("Start");
 115                 //make BerlinModel Source
 116                 Source source = berlinModelSource;
 117                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 118
 119                 BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source,  destination);
 120
 121                 config.setClassificationUuid(classificationUuid);
 122 //              bmImportConfigurator.setSourceSecId(sourceSecId);
 123                 config.setNomenclaturalCode(nomenclaturalCode);
 124                 config.setEditor(editor);
 125                 config.setIncludeFlatClassifications(includeFlatClassifications);
 126
 127                 config.setDoAuthors(doAuthors);
 128                 config.setDoReferences(doReferences);
 129                 config.setDoTaxonNames(doTaxonNames);
 130                 config.setDoRelNames(doRelNames);
 131                 config.setDoNameStatus(doNameStatus);
 132                 config.setDoTypes(doTypes);
 133                 config.setDoNameFacts(doNameFacts);
 134
 135                 config.setDoTaxa(doTaxa);
 136                 config.setDoRelTaxa(doRelTaxa);
 137                 config.setDoFacts(doFacts);
 138                 config.setDoOccurrence(doOccurences);
 139                 config.setDoCommonNames(doCommonNames);
 140                 config.setSourceRefUuid(sourceRefUuid);
 141
 142                 config.setDbSchemaValidation(hbm2dll);
 143
 144                 config.setCheck(check);
 145
 146                 // invoke import
 147                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 148                 bmImport.invoke(config);
 149
 150 //              if (doFacts && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){
 151 //                      ICdmApplicationConfiguration app = bmImport.getCdmAppController();
 152 //
 153 //                      //make feature tree
 154 //                      FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, config.getFeatureMap(), featureKeyList);
 155 //                      FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 156 //                      tree.getRoot().addChild(distributionNode, 0);
 157 //                      app.getFeatureTreeService().saveOrUpdate(tree);
 158 //              }
 159
 160
 161                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 162         }
 163
 164
 165         /**
 166          * @param args
 167          */
 168         public static void main(String[] args) {
 169                 MTMooseActivator activator = new MTMooseActivator();
 170                 activator.invoke(args);
 171         }
 172
 173 }