2 * Copyright (C) 2007 EDIT
3 * European Distributed Institute of Taxonomy
4 * http://www.e-taxonomy.eu
6 * The contents of this file are subject to the Mozilla Public License Version 1.1
7 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.cdm
.app
.abcdImport
;
14 import java
.net
.URISyntaxException
;
16 import org
.apache
.log4j
.Logger
;
18 import eu
.etaxonomy
.cdm
.app
.common
.CdmDestinations
;
19 import eu
.etaxonomy
.cdm
.database
.DbSchemaValidation
;
20 import eu
.etaxonomy
.cdm
.database
.ICdmDataSource
;
21 import eu
.etaxonomy
.cdm
.io
.common
.CdmDefaultImport
;
22 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
.CHECK
;
23 import eu
.etaxonomy
.cdm
.io
.specimen
.excel
.in
.SpecimenSynthesysExcelImportConfigurator
;
33 public class SynthesysCacheActivator
{
34 @SuppressWarnings("unused")
35 private static Logger logger
= Logger
.getLogger(SynthesysCacheActivator
.class);
37 //database validation status (create, update, validate ...)
39 // final static String xmlSource = "/home/pkelbert/workspace/proibiosphere/cdmlib-io/target/test-classes/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls";
40 final static String xmlSource
= "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/GBIF data etc.xls";
43 // static final ICdmDataSource cdmDestination = CdmDestinations.mon_cdm();
44 // static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
45 static final ICdmDataSource cdmDestination
= CdmDestinations
.proibiosphere_chenopodium_local();
46 static DbSchemaValidation hbm2dll
= DbSchemaValidation
.VALIDATE
;
47 static final CHECK check
= CHECK
.IMPORT_WITHOUT_CHECK
;
52 public static void main(String
[] args
) {
55 URI uri
= new File(xmlSource
).toURI();
56 source
= new URI(uri
.toString());
57 System
.out
.println(source
.toString());
58 System
.out
.println("Start import from Excel Specimen data("+ source
.toString() + ") ...");
60 ICdmDataSource destination
= cdmDestination
;
61 SpecimenSynthesysExcelImportConfigurator specimenImportConfigurator
= SpecimenSynthesysExcelImportConfigurator
.NewInstance(source
, destination
);
63 specimenImportConfigurator
.setSourceSecId("specimen");
64 specimenImportConfigurator
.setCheck(check
);
65 specimenImportConfigurator
.setDbSchemaValidation(hbm2dll
);
66 specimenImportConfigurator
.setDoAutomaticParsing(true);
67 specimenImportConfigurator
.setReUseExistingMetadata(true);
68 specimenImportConfigurator
.setAskForDate(true);
69 specimenImportConfigurator
.setDefaultAuthor("L.");
70 specimenImportConfigurator
.setClassificationName("Chenopodium");
72 specimenImportConfigurator
.setReUseTaxon(true);
74 specimenImportConfigurator
.setSourceReference(null);
75 specimenImportConfigurator
.setTaxonReference(null);
78 CdmDefaultImport
<SpecimenSynthesysExcelImportConfigurator
> specimenImport
= new CdmDefaultImport
<SpecimenSynthesysExcelImportConfigurator
>();
79 //new Test().invoke(tcsImportConfigurator);
80 specimenImport
.invoke(specimenImportConfigurator
);
81 System
.out
.println("End import from SpecimenData ("+ source
.toString() + ")...");
82 } catch (URISyntaxException e
) {