app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/BfnXmlTestActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.redlist;
  11
  12 import java.net.URI;
  13 import java.util.Arrays;
  14 import java.util.List;
  15 import java.util.Scanner;
  16
  17 import org.apache.log4j.Logger;
  18
  19 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  20 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  21 import eu.etaxonomy.cdm.database.ICdmDataSource;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  24 import eu.etaxonomy.cdm.io.redlist.bfnXml.in.BfnXmlImportConfigurator;
  25 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  26
  27 /**
  28  * @author a.oppermann
  29  * @created 16.07.2013
  30  */
  31 public class BfnXmlTestActivator {
  32
  33         private static final Logger logger = Logger.getLogger(BfnXmlTestActivator.class);
  34
  35         //database validation status (create, update, validate ...)
  36         static DbSchemaValidation schemaValidation = DbSchemaValidation.CREATE;
  37 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_plant_localhost();
  38 //      static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  39         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
  40 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_animalia_production();
  41
  42
  43 //      private static final String strSource = "/eu/etaxonomy/cdm/io/bfnXml/";
  44         private static final String sourceUriBase = "file:///home/pplitzner/Rote%20Listen%202020/doctronic/";
  45
  46         //nom Code
  47         private static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICZN;
  48
  49         //check - import
  50         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  51
  52
  53         //authors
  54         static final boolean doMetaData = true;
  55         //names
  56         static final boolean doTaxonNames = true;
  57         //feature
  58         static final boolean doFeature = true;
  59         //feature
  60     static final boolean doAdditionalTerms = true;
  61
  62     private final String filename;
  63
  64         public BfnXmlTestActivator(String fileName){
  65                 filename = fileName;
  66         }
  67
  68         private void doImport(){
  69                 System.out.println("Start import from " + filename + " to "+ cdmDestination.getDatabase() + " ...");
  70
  71                 //make Source
  72                 URI source;
  73                 try {
  74                     source = URI.create(sourceUriBase + filename);
  75 //                      source = this.getClass().getResource(strSource + filename).toURI();
  76                         ICdmDataSource destination = cdmDestination;
  77
  78                         BfnXmlImportConfigurator bfnImportConfigurator = BfnXmlImportConfigurator.NewInstance(source,  destination);
  79
  80                         //if xmllist has two lists
  81                         bfnImportConfigurator.setHasSecondList(true);
  82                         bfnImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
  83                         bfnImportConfigurator.setDoMetaData(doMetaData);
  84                         bfnImportConfigurator.setDoTaxonNames(doTaxonNames);
  85
  86                         bfnImportConfigurator.setCheck(check);
  87                         bfnImportConfigurator.setDbSchemaValidation(schemaValidation);
  88
  89                         //TODO only quickfix see also MetaData import
  90                         String classificationName = filename.replace("rldb_print_v4_0_1_0_", "").split("_")[0];
  91                         bfnImportConfigurator.setClassificationName(classificationName);
  92
  93                         // invoke import
  94                         CdmDefaultImport<BfnXmlImportConfigurator> bfnImport = new CdmDefaultImport<BfnXmlImportConfigurator>();
  95                         bfnImport.invoke(bfnImportConfigurator);
  96
  97                         logger.warn("End");
  98                         System.out.println("End import from BfnXML ("+ source.toString() + ")...");
  99                 } catch (Exception e) {
 100                         e.printStackTrace();
 101                 }
 102
 103         }
 104
 105         /**
 106          * @param args
 107          */
 108         public static void main(String[] args) {
 109
 110                 List<String> fileNames = Arrays.asList(
 111 //                              Plants
 112 //                              "rldb_print_v4_0_1_0_Flechten_korr_verantw_syn.xml"
 113 //                              "rldb_print_v4_0_1_0_Lichenicole_verantw_syn.xml",
 114 //                              "rldb_print_v4_0_1_0_Makroalgen_150121_syn.xml",
 115 //                              "rldb_print_v4_0_1_0_Myxo_110708_korr_syn_neu.xml",
 116 //                              "rldb_print_v4_0_1_0_Saprophyten_verantw.xml"
 117 //
 118 //                              Animals
 119 //                              "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml"
 120 //
 121 //                              "rldb_print_v4_0_1_0_artenarmeWeichtiergruppen_121127_verantw_syn.xml",
 122 //                              "rldb_print_v4_0_1_0_Asilidae_GMH_Wolff_110314_HGxls_120413_DF_korrV_Verantw_syn.xml",
 123 //                              "rldb_print_v4_0_1_0_Asseln_121128_verantw_syn.xml",
 124 //                              "rldb_print_v4_0_1_0_Asselspinnen_120907_verantw_syn.xml",
 125 //                              "rldb_print_v4_0_1_0_Bienen_PWKorr_HG_120413_DF_120612_syn.xml",
 126 //                              "rldb_print_v4_0_1_0_Binnenmollusken_0alle_120413_DF_syn.xml",
 127 ////                            "rldb_print_v4_0_1_0_Blattoptera_140413_DF_syn.xml",
 128 //                              "rldb_print_v4_0_1_0_Empidoidea_120413_DF.xml",
 129 //                              "rldb_print_v4_0_1_0_Eulen_Korruebern_23-05-2012_KorrV_syn.xml",
 130 //
 131 ////                    ,       "rldb_print_v4_0_1_0_Eulenspinner_Spanner_13-06-2012_KorrV_syn.xml",
 132 //
 133 //                              "rldb_print_v4_0_1_0_Flohkrebse_121128_verantw_syn.xml",
 134 //                              "rldb_print_v4_0_1_0_Heuschrecken_syn.xml",
 135 //                              "rldb_print_v4_0_1_0_Igelwuermer_120907_verantw.xml",
 136 //                              "rldb_print_v4_0_1_0_Kumazeen_120709_verantw_syn.xml",
 137 //                              "rldb_print_v4_0_1_0_Meeresfische_syn.xml",
 138 //                              "rldb_print_v4_0_1_0_Moostierchen_121128_verantw_syn.xml",
 139 //                              "rldb_print_v4_0_1_0_Muscheln_121128_verantw_syn.xml",
 140 //                              "rldb_print_v4_0_1_0_Nesseltiere_130104_verantw_syn.xml",
 141 //                              "rldb_print_v4_0_1_0_Ohrwuermer_DF_syn.xml",
 142 //                              "rldb_print_v4_0_1_0_Pflanzenwespen_280711_Autor_110815_HG2_120413_DF_syn.xml",
 143 //                              "rldb_print_v4_0_1_0_Pyraloidea_Februar_2012_Korruebern_MB_24-04-2012_syn.xml",
 144 //                              "rldb_print_v4_0_1_0_Schaedellose_120907_verantw_syn.xml",
 145 //                              "rldb_print_v4_0_1_0_Schnecken_130206_verantw_syn.xml",
 146 //                              "rldb_print_v4_0_1_0_Schwaemme_121127_verantw_syn.xml",
 147 //                              "rldb_print_v4_0_1_0_Schwebfliegen_111103_KorrAS_120413_DF_syn.xml",
 148 //                              "rldb_print_v4_0_1_0_Seepocken_121128_verantw_syn.xml",
 149 //                              "rldb_print_v4_0_1_0_Seescheiden_121128_verantw_syn.xml",
 150 //                              "rldb_print_v4_0_1_0_Spinner_Oktober2011_eingearbKorr_120124_Korruebern_MB_02-05-2012_KorrV_syn.xml",
 151 //                              "rldb_print_v4_0_1_0_Stachelhaeuter_121128_verantw_syn.xml",
 152 //                              "rldb_print_v4_0_1_0_Tagfalter_06-06-2012_KorrV_syn.xml",
 153 //                              "rldb_print_v4_0_1_0_Thysanoptera_120413_DF_korrV_Verantw.xml",
 154 //                              "rldb_print_v4_0_1_0_Vielborster_130206_verantw_syn.xml",
 155 //                              "rldb_print_v4_0_1_0_Wenigborster_121128_verantw_syn.xml",
 156 //                              "rldb_print_v4_0_1_0_Zehnfusskrebse_130104_verantw_syn.xml"
 157 //
 158
 159                                 //old list
 160 //                              "rldb_print_v4_0_1_0_Amphibien.xml",
 161 //                              "rldb_print_v4_0_1_0_Brutvoegel.xml",
 162 //                              "rldb_print_v4_0_1_0_Fische.xml",
 163 //                              "rldb_print_v4_0_1_0_Reptilien_1.xml"
 164
 165                                 //two lists in one
 166                                 "RoteListe_v4_0_6_0_BFN_Saeuger_korr.xml"
 167                                 );
 168                 for(String fileName : fileNames){
 169                         BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName);
 170                         bfnXmlTestActivator.doImport();
 171 //                      pauseProg();
 172                 }
 173
 174                         //first run
 175                         //create DB,Metadata
 176 //                      String fileName = "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml";
 177 //                      BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName);
 178 //                      bfnXmlTestActivator.doImport();
 179         }
 180
 181         @SuppressWarnings("resource")
 182     public static void pauseProg(){
 183                 System.out.println("Press enter to continue...");
 184                 Scanner keyboard = new Scanner(System.in);
 185                 keyboard.nextLine();
 186         }
 187 }
 188