cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/ErmsImportActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.pesi;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmRepository;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  21 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  23 import eu.etaxonomy.cdm.io.common.Source;
  24 import eu.etaxonomy.cdm.io.pesi.erms.ErmsImportConfigurator;
  25 import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;
  26 import eu.etaxonomy.cdm.model.name.TaxonName;
  27 import eu.etaxonomy.cdm.model.reference.ISourceable;
  28
  29 /**
  30  * @author a.mueller
  31  */
  32 public class ErmsImportActivator {
  33
  34     private static final Logger logger = Logger.getLogger(ErmsImportActivator.class);
  35
  36 //      static final Source ermsSource = PesiSources.PESI3_ERMS();
  37         static final Source ermsSource = PesiSources.PESI2019_ERMS();
  38
  39 //      static final ICdmDataSource cdmDestination = CdmDestinations.test_cdm_pesi_erms();
  40         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_erms();
  41 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_erms2();
  42
  43         static final Source pesiDestination =
  44                 cdmDestination == CdmDestinations.cdm_test_local_mysql_erms()?
  45                         PesiDestinations.pesi_test_local_CDM_ERMS2PESI():
  46                         PesiDestinations.pesi_test_local_CDM_ERMS2PESI_2()    ;
  47
  48         static final boolean includeExport2PESI = false;
  49
  50         static final UUID classificationUuid = UUID.fromString("6fa988a9-10b7-48b0-a370-2586fbc066eb");
  51         static final String classificationName = "ERMS 2019";
  52         static final String sourceRefTitle = "ERMS export for PESI";
  53
  54         //check - import
  55         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  56         static final int partitionSize = 5000;
  57         //ignore null
  58         static final boolean ignoreNull = true;
  59
  60 // ***************** ALL ************************************************//
  61
  62 //      static final DO_REFERENCES doReferences = DO_REFERENCES.ALL;
  63 //      static final boolean doTaxa = true;
  64 //      static final boolean doRelTaxa = doTaxa; //should always run with doTaxa because dependent on state from doTaxa
  65 //      static final boolean doSourceUse = false;
  66 //      static final boolean doCommonNames = false;
  67 //    static final boolean doNotes = false;
  68 //      static final boolean doDistributions = false;
  69 //      static final boolean doLinks = false;
  70 //      static final boolean doImages = false;
  71
  72 //******************** NONE ***************************************//
  73 //
  74         static final DO_REFERENCES doReferences = DO_REFERENCES.NONE;
  75         static final boolean doTaxa = false;
  76         static final boolean doRelTaxa = doTaxa; //should always run with doTaxa because depends on state from doTaxa
  77     static final boolean doSourceUse = true;
  78         static final boolean doCommonNames = true;
  79         static final boolean doNotes = true;
  80         static final boolean doDistributions = true;
  81         static final boolean doLinks = true;
  82         static final boolean doImages = true;
  83
  84         private static DbSchemaValidation hbm2dll = (doReferences ==  DO_REFERENCES.ALL)? DbSchemaValidation.CREATE:DbSchemaValidation.VALIDATE;
  85
  86         private void doImport(Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){
  87                 System.out.println("Start import from ("+ ermsSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ..." );
  88
  89                 //make ERMS Source
  90
  91                 ErmsImportConfigurator config = ErmsImportConfigurator.NewInstance(source,  destination);
  92
  93                 config.setClassificationUuid(classificationUuid);
  94
  95                 config.setIgnoreNull(ignoreNull);
  96                 config.setDoReferences(doReferences);
  97
  98                 config.setDoTaxa(doTaxa);
  99                 config.setDoRelTaxa(doRelTaxa);
 100                 config.setDoSourceUse(doSourceUse);
 101                 config.setDoLinks(doLinks);
 102                 config.setDoDistributions(doDistributions);
 103                 config.setDoVernaculars(doCommonNames);
 104                 config.setDoNotes(doNotes);
 105                 config.setDoImages(doImages);
 106
 107                 config.setDbSchemaValidation(hbm2dll);
 108
 109                 config.setCheck(check);
 110                 config.setRecordsPerTransaction(partitionSize);
 111                 config.setSourceRefUuid(PesiTransformer.uuidSourceRefErms);
 112                 config.setClassificationName(classificationName);
 113                 config.setSourceReferenceTitle(sourceRefTitle);
 114
 115                 // invoke import
 116                 CdmDefaultImport<ErmsImportConfigurator> ermsImport = new CdmDefaultImport<>();
 117                 ermsImport.invoke(config);
 118
 119                 if (config.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 120                         ICdmRepository app = ermsImport.getCdmAppController();
 121                         ISourceable<?> obj = app.getCommonService().getSourcedObjectByIdInSource(TaxonName.class, "1000027", null);
 122                         logger.info(obj);
 123
 124 //                      //make feature tree
 125 //                      FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, ermsImportConfigurator.getFeatureMap(), featureKeyList);
 126 //                      app = ermsImport.getCdmAppController();
 127 //                      app.getFeatureTreeService().saveOrUpdate(tree);
 128                 }
 129                 System.out.println("End import from ("+ source.getDatabase() + ") to "+cdmDestination.getDatabase() + "...");
 130         }
 131
 132         public static void main(String[] args) {
 133                 ICdmDataSource cdmDB = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 134                 ErmsImportActivator ermsImport = new ErmsImportActivator();
 135                 ermsImport.doImport(ermsSource, cdmDB, hbm2dll);
 136
 137                 if (includeExport2PESI){
 138                         PesiExportActivatorERMS ermsExport = new PesiExportActivatorERMS();
 139                         ermsExport.doTaxa = doTaxa;
 140                         ermsExport.doTreeIndex = doTaxa;
 141                         ermsExport.doRelTaxa = doRelTaxa;
 142 //            ermsExport.doInferredSynonyms = doRelTaxa;
 143             ermsExport.doDescriptions = doImages;
 144
 145                         ermsExport.doExport(cdmDB, pesiDestination);
 146                 }
 147                 System.exit(0);
 148         }
 149 }