cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/ErmsActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.pesi;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  21 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  23 import eu.etaxonomy.cdm.io.common.Source;
  24 import eu.etaxonomy.cdm.io.pesi.erms.ErmsImportConfigurator;
  25 import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;
  26 import eu.etaxonomy.cdm.model.common.ISourceable;
  27 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  28 import eu.etaxonomy.cdm.model.name.ZoologicalName;
  29
  30
  31 /**
  32  * TODO add the following to a wiki page:
  33  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data base under another operation systen
  34  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  35  *
  36  *
  37  * @author a.mueller
  38  *
  39  */
  40 public class ErmsActivator {
  41         private static final Logger logger = Logger.getLogger(ErmsActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45         static final Source ermsSource = PesiSources.PESI_ERMS();
  46 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_pesi_erms();
  47         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
  48         static final UUID treeUuid = UUID.fromString("8bd27d84-fd4f-4bfa-bde0-3e6b7311b334");
  49         static final UUID featureTreeUuid = UUID.fromString("33cbf7a8-0c47-4d47-bd11-b7d77a38d0f6");
  50         //static final Object[] featureKeyList = new Integer[]{1,4,5,10,11,12,13,14, 249, 250, 251, 252, 253};
  51
  52         //check - import
  53         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  54
  55         static final int partitionSize = 5000;
  56
  57
  58         //NomeclaturalCode
  59         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICZN;
  60
  61         //ignore null
  62         static final boolean ignoreNull = true;
  63
  64 // ***************** ALL ************************************************//
  65
  66         //references
  67         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  68
  69         //taxa
  70         static final boolean doTaxa = true;
  71         static final boolean doRelTaxa = true;
  72         static final boolean doLinks = true;
  73         static final boolean doOccurences = true;
  74         static final boolean doImages = true;
  75
  76
  77 //******************** NONE ***************************************//
  78
  79
  80 //      //references
  81 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  82 //
  83 //      //taxa
  84 //      static final boolean doTaxa = false;
  85 //      static final boolean doRelTaxa = false;
  86 //      static final boolean doLinks = false;
  87 //      static final boolean doOccurences = false;
  88 //
  89
  90
  91         /**
  92          * @param args
  93          */
  94         public static void main(String[] args) {
  95                 System.out.println("Start import from ("+ ermsSource.getDatabase() + ") ...");
  96
  97                 //make ERMS Source
  98                 Source source = ermsSource;
  99                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 100
 101                 ErmsImportConfigurator ermsImportConfigurator = ErmsImportConfigurator.NewInstance(source,  destination);
 102
 103                 ermsImportConfigurator.setClassificationUuid(treeUuid);
 104                 ermsImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 105
 106                 ermsImportConfigurator.setIgnoreNull(ignoreNull);
 107                 ermsImportConfigurator.setDoReferences(doReferences);
 108
 109                 ermsImportConfigurator.setDoTaxa(doTaxa);
 110                 ermsImportConfigurator.setDoRelTaxa(doRelTaxa);
 111                 ermsImportConfigurator.setDoLinks(doLinks);
 112                 ermsImportConfigurator.setDoOccurrence(doOccurences);
 113                 ermsImportConfigurator.setDbSchemaValidation(hbm2dll);
 114
 115                 ermsImportConfigurator.setCheck(check);
 116                 ermsImportConfigurator.setRecordsPerTransaction(partitionSize);
 117                 ermsImportConfigurator.setSourceRefUuid(PesiTransformer.uuidSourceRefErms);
 118
 119                 // invoke import
 120                 CdmDefaultImport<ErmsImportConfigurator> ermsImport = new CdmDefaultImport<ErmsImportConfigurator>();
 121                 ermsImport.invoke(ermsImportConfigurator);
 122
 123                 if (ermsImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || ermsImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 124                         ICdmApplicationConfiguration app = ermsImport.getCdmAppController();
 125                         ISourceable obj = app.getCommonService().getSourcedObjectByIdInSource(ZoologicalName.class, "1000027", null);
 126                         logger.info(obj);
 127
 128 //                      //make feature tree
 129 //                      FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, ermsImportConfigurator.getFeatureMap(), featureKeyList);
 130 //                      app = ermsImport.getCdmAppController();
 131 //                      app.getFeatureTreeService().saveOrUpdate(tree);
 132                 }
 133                 System.out.println("End import from ("+ source.getDatabase() + ")...");
 134         }
 135
 136 }