app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SynthesysCacheActivator.java

   1 /**
   2  * Copyright (C) 2007 EDIT
   3  * European Distributed Institute of Taxonomy
   4  * http://www.e-taxonomy.eu
   5  *
   6  * The contents of this file are subject to the Mozilla Public License Version 1.1
   7  * See LICENSE.TXT at the top of this package for the full license terms.
   8  */
   9
  10 package eu.etaxonomy.cdm.app.abcdImport;
  11
  12 import java.io.File;
  13 import java.net.URI;
  14 import java.net.URISyntaxException;
  15
  16 import org.apache.log4j.Logger;
  17
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator;
  24
  25
  26
  27
  28 /**
  29  * @author PK
  30  * @created 19.09.2008
  31  * @version 1.0
  32  */
  33 public class SynthesysCacheActivator {
  34     @SuppressWarnings("unused")
  35     private static Logger logger = Logger.getLogger(SynthesysCacheActivator.class);
  36
  37     //database validation status (create, update, validate ...)
  38
  39 //    final static String xmlSource = "/home/pkelbert/workspace/proibiosphere/cdmlib-io/target/test-classes/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls";
  40     final static String xmlSource = "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/GBIF data etc.xls";
  41
  42
  43 //  static final ICdmDataSource cdmDestination = CdmDestinations.mon_cdm();
  44 //    static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45     static final ICdmDataSource cdmDestination = CdmDestinations.proibiosphere_chenopodium_local();
  46     static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;
  47     static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  48
  49     /**
  50      * @param args
  51      */
  52     public static void main(String[] args) {
  53         URI source;
  54         try {
  55             URI uri = new File(xmlSource).toURI();
  56             source = new URI(uri.toString());
  57             System.out.println(source.toString());
  58             System.out.println("Start import from  Excel Specimen data("+ source.toString() + ") ...");
  59
  60             ICdmDataSource destination = cdmDestination;
  61             SpecimenSynthesysExcelImportConfigurator specimenImportConfigurator = SpecimenSynthesysExcelImportConfigurator.NewInstance(source,  destination);
  62
  63             specimenImportConfigurator.setSourceSecId("specimen");
  64             specimenImportConfigurator.setCheck(check);
  65             specimenImportConfigurator.setDbSchemaValidation(hbm2dll);
  66             specimenImportConfigurator.setDoAutomaticParsing(true);
  67             specimenImportConfigurator.setReUseExistingMetadata(true);
  68             specimenImportConfigurator.setAskForDate(true);
  69             specimenImportConfigurator.setDefaultAuthor("L.");
  70             specimenImportConfigurator.setClassificationName("Chenopodium");
  71
  72             specimenImportConfigurator.setReUseTaxon(true);
  73
  74             specimenImportConfigurator.setSourceReference(null);
  75             specimenImportConfigurator.setTaxonReference(null);
  76
  77             // invoke import
  78             CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator> specimenImport = new CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator>();
  79             //new Test().invoke(tcsImportConfigurator);
  80             specimenImport.invoke(specimenImportConfigurator);
  81             System.out.println("End import from SpecimenData ("+ source.toString() + ")...");
  82         } catch (URISyntaxException e) {
  83             e.printStackTrace();
  84         }
  85
  86     }
  87
  88
  89 }