cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsReferenceImport.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.io.pesi.erms;
  11
  12 import java.sql.ResultSet;
  13 import java.sql.SQLException;
  14 import java.util.HashMap;
  15 import java.util.Map;
  16
  17 import org.apache.log4j.Logger;
  18 import org.springframework.stereotype.Component;
  19
  20 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  21 import eu.etaxonomy.cdm.io.common.IOValidator;
  22 import eu.etaxonomy.cdm.io.common.mapping.DbIgnoreMapper;
  23 import eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationMapper;
  24 import eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionMapper;
  25 import eu.etaxonomy.cdm.io.common.mapping.DbImportMapping;
  26 import eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapper;
  27 import eu.etaxonomy.cdm.io.common.mapping.DbImportStringMapper;
  28 import eu.etaxonomy.cdm.io.common.mapping.DbImportTruncatedStringMapper;
  29 import eu.etaxonomy.cdm.io.common.mapping.DbNotYetImplementedMapper;
  30 import eu.etaxonomy.cdm.io.common.mapping.IMappingImport;
  31 import eu.etaxonomy.cdm.io.pesi.erms.validation.ErmsReferenceImportValidator;
  32 import eu.etaxonomy.cdm.model.common.AnnotationType;
  33 import eu.etaxonomy.cdm.model.common.CdmBase;
  34 import eu.etaxonomy.cdm.model.common.ExtensionType;
  35 import eu.etaxonomy.cdm.model.common.Language;
  36 import eu.etaxonomy.cdm.model.reference.Reference;
  37 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  38
  39
  40 /**
  41  * @author a.mueller
  42  * @created 20.02.2010
  43  * @version 1.0
  44  */
  45 @Component
  46 public class ErmsReferenceImport  extends ErmsImportBase<Reference> implements IMappingImport<Reference, ErmsImportState>{
  47         private static final Logger logger = Logger.getLogger(ErmsReferenceImport.class);
  48
  49         private DbImportMapping mapping;
  50
  51
  52         private int modCount = 10000;
  53         private static final String pluralString = "sources";
  54         private static final String dbTableName = "sources";
  55         private static final Class cdmTargetClass = Reference.class;
  56
  57         public ErmsReferenceImport(){
  58                 super(pluralString, dbTableName, cdmTargetClass);
  59         }
  60
  61
  62         /* (non-Javadoc)
  63          * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator)
  64          */
  65         @Override
  66         protected String getRecordQuery(ErmsImportConfigurator config) {
  67                 String strRecordQuery =
  68                         " SELECT * " +
  69                         " FROM sources " +
  70                         " WHERE ( sources.id IN (" + ID_LIST_TOKEN + ") )";
  71                 return strRecordQuery;
  72         }
  73
  74         /* (non-Javadoc)
  75          * @see eu.etaxonomy.cdm.io.erms.ErmsImportBase#getMapping()
  76          */
  77         protected DbImportMapping getMapping() {
  78                 if (mapping == null){
  79                         mapping = new DbImportMapping();
  80
  81                         mapping.addMapper(DbImportObjectCreationMapper.NewInstance(this, "id", REFERENCE_NAMESPACE)); //id
  82                         ExtensionType imisExtType = getExtensionType( ErmsTransformer.IMIS_UUID, "imis", "imis", "imis");
  83                         mapping.addMapper(DbImportExtensionMapper.NewInstance("imis_id", imisExtType));
  84
  85                         mapping.addMapper(DbImportTruncatedStringMapper.NewInstance("source_name", "titleCache", "title"));
  86                         mapping.addMapper(DbImportStringMapper.NewInstance("source_abstract", "referenceAbstract"));
  87                         mapping.addMapper(DbImportAnnotationMapper.NewInstance("source_note", AnnotationType.EDITORIAL(), Language.DEFAULT()));
  88
  89                         //or as Extension?
  90                         mapping.addMapper(DbImportExtensionMapper.NewInstance("source_link", ExtensionType.URL()));
  91
  92                         //not yet implemented
  93                         mapping.addMapper(DbIgnoreMapper.NewInstance("source_type", "Handled by ObjectCreateMapper - but mapping not yet fully correct. See comments there."));
  94                         mapping.addMapper(DbIgnoreMapper.NewInstance("source_orig_fn", "Currently not needed. Holds information about pdf files."));
  95                         mapping.addMapper(DbIgnoreMapper.NewInstance("source_openaccess", "Currently not needed. Holds information about open access of the source."));
  96
  97                 }
  98                 return mapping;
  99         }
 100
 101         /* (non-Javadoc)
 102          * @see eu.etaxonomy.cdm.io.common.mapping.IMappingImport#createObject(java.sql.ResultSet, eu.etaxonomy.cdm.io.common.ImportStateBase)
 103          */
 104         public Reference createObject(ResultSet rs, ErmsImportState state) throws SQLException {
 105                 int id = rs.getInt("id");
 106                 String type = rs.getString("source_type");
 107                 Reference ref;
 108                 if (type.equalsIgnoreCase("p")){
 109                         //TDOO is this correct? maybe mark as 'publication'
 110                         ref = ReferenceFactory.newGeneric();
 111                 }else if (type.equalsIgnoreCase("d")){
 112                         ref = ReferenceFactory.newDatabase();
 113                 }else if (type.equalsIgnoreCase("e")){
 114                         //TODO is this correct, maybe mark as "informal"
 115                         ref = ReferenceFactory.newGeneric();
 116                 }else if (type.equalsIgnoreCase("i")){
 117                         //TODO is this correct?
 118                         ref = ReferenceFactory.newGeneric();
 119                 }else{
 120                         ref = ReferenceFactory.newGeneric();
 121                         logger.warn("Unknown reference type: " + type + ". Created generic instead.");
 122                 }
 123
 124                 return ref;
 125         }
 126
 127         /* (non-Javadoc)
 128          * @see eu.etaxonomy.cdm.io.berlinModel.in.IPartitionedIO#getRelatedObjectsForPartition(java.sql.ResultSet)
 129          */
 130         public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs) {
 131                 Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>();
 132                 return result;  //not needed
 133         }
 134
 135         /* (non-Javadoc)
 136          * @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IImportConfigurator)
 137          */
 138         @Override
 139         protected boolean doCheck(ErmsImportState state){
 140                 IOValidator<ErmsImportState> validator = new ErmsReferenceImportValidator();
 141                 return validator.validate(state);
 142         }
 143
 144
 145         /* (non-Javadoc)
 146          * @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)
 147          */
 148         protected boolean isIgnore(ErmsImportState state){
 149                 //TODO
 150                 return state.getConfig().getDoReferences() != IImportConfigurator.DO_REFERENCES.ALL;
 151         }
 152
 153
 154
 155
 156
 157 }