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Release 5.29

12 days late (11/20/2021)

11%

290 issues   (11 closed — 279 open)

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Estimated time 2.00 hours
Issues by
bug

2/139
feature request

7/102
task

2/49
Related issues
bug #824: Rank labes and Rank names inconsitent
bug #1835: PALMS. Not clear format for authors and references to be parsed correctly
bug #1924: CIHORIEARE in-references in Footnotes
bug #2121: Series part is not reflected in cache strategy
bug #2448: Missing updated by/when (e.g. in PalmWeb)
bug #2449: Some or many names have an empty fullTitleCache though information is atomized
bug #3811: Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
bug #4330: Correct handling of nomenclatural inreferences of Journals
bug #4598: Media sections have duplicate code for "advanced media view" label
bug #4796: Sorting of hybrids
bug #4945: Right click menu for polytomous key node list view needs correct enabling
bug #6100: Name parser problems
bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
bug #6181: Deleting a misapplied name does not set the dirty flag
bug #6298: Add delete button for areas for common names and for person in user
bug #6383: fatal error on git push: The remote end hung up unexpectedly
bug #6499: Remaining issues to include pages in bibliographic reference titleCaches
bug #6500: Remaining issues for volume formating in generic references
bug #6523: Correct display of misspellings in synonymy
bug #6766: maven profile to build cdm-vaadin for production purposes
bug #7075: Excel import for images
bug #7183: Creating a new reference in bulk editor the focus is not set to the newly created entity
bug #7342: incomplete bean initialization with specific data causes LIEs
bug #7579: Set up pipelines in Jenkins to replace the build pipelines
bug #7781: original spelling is missing for accepted taxon in taxon page
bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
bug #7943: TypeDesignationsEditor Select Reference for figure
bug #8035: Vaadin Collector team layout
bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
bug #8202: Multiple representations exception when reusing image in image gallery
bug #8205: SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
bug #8233: [Follow up] Creating type duplicates
bug #8254: Add term information to state dropdown in CharacterMatrix
bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
bug #8338: Newly created structural modifier terms are not available in details view
bug #8343: potential timezone problem in application stack
bug #8367: Advanced media view is not available for media not edited in media details view
bug #8371: When creating a new term for a vocabulary the term should have the focus afterwards
bug #8417: LazyInitializationException in TermDTO for media
bug #8431: missing status bar for cdm light export
bug #8493: hide taxon page general tab TOC block if empty
bug #8510: Non unique object exception when creating FeatureStates
bug #8681: Fix sect. parsing
bug #8687: Description page must show all DescriptionElement subclasses
bug #8691: Remaining issues for asynchronous image loading
bug #8878: Author selection dialog does not work on abbrev author title
bug #8880: No classification parameter selected for DwC-A export
bug #8932: Swagger does not distinguish overloaded controller endpoints
bug #8935: Specimen Table: improved and more complete details row for character data
bug #8976: error in tagged_text_extract_reference_and_detail()
bug #9028: Endless loop when opening the context menu of name facts
bug #9051: Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
bug #9133: cdm_taxontree active taxon is focused after page reload
bug #9212: swagger-ui invalid try out URLs under HTTPS
bug #9217: swagger-ui slow in Cromium and freezes Firefox
bug #9236: stopping an instance breaks the centralized logging
bug #9302: Phycobank related issues for TypeDesignation formatting
bug #9303: [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes editable in TaxEditor
bug #9367: E+M shapefile Baltikum subarea borders always visible
bug #9390: Remaining issues for set secundum dialog
bug #9393: NPE when removing parent from TaxonNode editor
bug #9423: Improve language handling for TermType.getMessage() and others
bug #9424: CdmImageInfo connection timeout implemented
bug #9425: Common Names handling in CdmLight
bug #9435: Error when deleting without saving
bug #9438: User without rights on publish flag can update publish flag of synonyms and subtree operations
bug #9440: Invalid designation sign missing for some invalid designations in data portal
bug #9450: Save reverts previous changes in NameEditor
bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
bug #9489: Fix header of character matrix for hierarchical characters
bug #9510: Improve label for descriptions created via DDS matrix
bug #9516: Check publish flag of all homotypic synonyms when moving
bug #9522: Workflow for reuse name
bug #9532: Check whether all data are loaded for NameEditor
bug #9534: Filtering of reference type does not work correctly
bug #9565: revise name render templates selection strategy
bug #9581: Strange focus behavior in taxon navigator after right mouse click
bug #9585: Specimen page: Typedesignation "Syntype" misses name
bug #9600: Delete of taxon with unselected name delete returns warning
bug #9608: UriUtils to use HTTP HEAD requests where possible
bug #9609: Use DerivedUnit or FieldUnit for DetailsView of tree editor
bug #9610: MediaMedadataFileReader (formerly in CdmImageInfo) loads same image file multiple times
bug #9615: Opttions for schema creation in empty data bases.
bug #9620: Add a preference which defines whether a new uuid is wanted for swap synoym and accepted
bug #9621: New Preference for Default of the SecundumForSubtreeConfigurator
bug #9627: Handle updated objects correctly in monitored operations in taxeditor
bug #9631: New implementation for disable details/supplemental data views
bug #9633: startup option to create an initial classfication
bug #9656: Closing the referencing objects view should cancel the current request
bug #9662: CDMLight: Output should summarize all MAN with same name and err. sec
bug #9668: Secundum reference is switched when swap synonym and accepted taxon
bug #9676: Separators in nomenclatural act representations between identifier and date
bug #9686: nomenclatural status missing in
bug #9709: remove undesired dots from synonymy entries
bug #9732: Open issues in specimen tree editor
bug #9741: cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other odds
bug #9742: embedded h2 database in server mode for connection pooling
bug #9750: [CdmLight] Export all name identifier
bug #9766: CDM vocabularies should not be editable
bug #9775: Open issues for web app media in the image gallery
bug #9776: Enforce cdm websservice access via https when pages are requested via this schema
bug #9777: TypeError: Argument 1 passed to cdm_tagged_text_add_options() in registration-search
bug #9779: Exception when override db preference
bug #9781: Merge of QuantitativeData or CategoricalData from Character Matrix should not create new records
bug #9783: When a new value is added to a quantitative data it should appear at the end
bug #9789: Missing configurator when deleting a classification
bug #9791: Handle differing media meta data and informations in DB
bug #9800: Open issues for character matrix
bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
bug #9813: Details view should be available for literature (and default) descriptions in character matrix
bug #9823: [Distribution Editor] Unsaved changes not shown in correct column when changing areas
bug #9828: Preferred stable URI (and maybe other data) are not shown in specimen table if no field unit exists
bug #9843: When adding new descriptions it should not be necessary to load the complete matrix
bug #9844: Add preference for disabling cloned descriptions
bug #9846: Improve delete configuration in specimen list editor
bug #9847: Specimen table view citation must not include collection information
bug #9850: Discussion and implementation how to expand the tree
bug #9851: Problems during search for updates when network delay is too big
bug #9854: In ABCD import typedesignations should not be added to all names of a homotypic group
bug #9855: Specimen images sometimes show duplicates
bug #9856: Cancel of taxon selection in move synonym results in exception
bug #9857: TitleCache field of collector in specimen dialog should show collector title
bug #9861: Provide possibility to set a field as inapplicable
bug #9872: Selecting cancel in "many records selected" dialogue for specimen tree editor has not effect.
bug #9878: show MediaSpecimen media source citations in registration items
bug #9881: Newly created collector team is not shown in selection dialog
bug #9882: Null argument when deleting description in bulkeditor
bug #9883: Swagger-UI respects https
bug #9891: Open issues for RIS import in TaxEditor
feature request #694: FeatureTreeService and DescriptionElement implemented
feature request #1742: Adapt the ZooNameDefaultCacheStrategy
feature request #2506: (Type-) Specimens may need status
feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
feature request #3749: Check if all molecular data is shown correctly in data portal [also DISCUSS]
feature request #3756: Check that MediaSpecimen are corretly handled in data portal
feature request #4867: Add menu item for subtree cloning
feature request #5671: Name selection should not allow self referencing name relationships
feature request #6161: Service and webservice to recover forgotten passwords
feature request #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
feature request #6774: Implement OWL export
feature request #6865: [DISCUSS] Separator for Code and Accession Number
feature request #6929: handling of misapplied names without accepted name
feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
feature request #7416: OriginalSourceBase.links should be shown in DataPortal
feature request #7580: User wishes: CharacterMatrix
feature request #7696: use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service
feature request #7860: [Master] Remaining E+M editor issues
feature request #7932: Implement subject resolver for CdmPreferences
feature request #8122: Implement selection of modifier vocabulary for structures and properties
feature request #8137: Implement sources for type designations in data portal
feature request #8182: show blast search result
feature request #8195: TaxonNamePopupEditor: offer Reference and RuleConsidered fields for replaced synonyms
feature request #8207: RegistrationUI: helps avoid name duplicates
feature request #8248: Implement OWL import
feature request #8309: Implement preferences with predicate and subject in local preferences
feature request #8325: Create CDM Instance with all CDM core terms
feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
feature request #8450: Character matrix UX
feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
feature request #8529: [DISCUSS]Display of aggregated descriptions
feature request #8700: Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens
feature request #8742: Allow deleting vocabularies
feature request #8756: Refresh button for structure tree and property tree in Character Editor
feature request #8769: Biocase import configuration should be shown when clicking on import button
feature request #8775: Improve (rapid) data entry into characater matrix for categorical data
feature request #8777: Make visiblity of CDM Source configurable
feature request #8902: Add "open in" menu to row menu in matrix editor
feature request #8930: Taxon navigator should show icon if a taxon is unpublished
feature request #8947: support multiple values of statistical value type ExactValue
feature request #8960: Use explicit icon for accepted taxa being basionyms
feature request #8967: Improve label for cloned descriptions
feature request #8980: Type specimen editor, collection data field misused by users
feature request #8983: authors and team in combobox better distinguishable
feature request #8989: Implement flowering periods (temporal facts) in dataportal
feature request #9054: Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
feature request #9079: Move supported and available for parts of feature detail element to sections
feature request #9090: Implement external links for identifiable entities in TaxEditor
feature request #9114: Handle malformed URIs in user type
feature request #9117: show textual type information in registration page
feature request #9190: Make taxeditor.local a loadable plugin not installed by default
feature request #9370: Search in media bulk editor should include search on URI
feature request #9380: It is not possible to show MediaRepresentation(Part) supplemental data
feature request #9381: Refresh button for character matrix
feature request #9399: DB preference to make all Specimen functionality/menu items invisible
feature request #9418: Improve entering of date published
feature request #9437: Show user friendly text for permission denied exception
feature request #9473: Support moving images to new taxa similar to facts
feature request #9487: Split state (and/or other big) vocabularies
feature request #9497: User self registration service
feature request #9498: Password Recovery, Registration and Login Dialog Tab fully functional
feature request #9511: Move specimens/individual associations for matrix into same description
feature request #9514: Open issues for taxon navigator refresh
feature request #9517: Descriptions with status "IndividualsAssociation" should only support adding of features supporting IndividualAssociations
feature request #9519: Add posibilty to add IndividualAssociation descriptions in Facts View
feature request #9523: Check secundum of homotypic synonyms when changing accepted taxon to synonym
feature request #9540: Handle classification source as source in TaxEditor
feature request #9547: Show warning in TaxEditor if a MediaRepresentation can not be shown in a Viewer
feature request #9548: Handle links to websites, webapps or similar in image galleries (simple and UV)
feature request #9584: specimen page: character data displayed in details section
feature request #9592: SpecimenOrObservationBaseDTO: field for hidden derivatives
feature request #9616: Reference for condensed distribution string
feature request #9622: Improve remoting progress monitor handling
feature request #9626: Implement publisher information for bibliographic reference formatting
feature request #9652: instances status report web service
feature request #9677: Implement recombine operation
feature request #9696: Implement taxon concept additional parameter for Taxon details view
feature request #9698: Make name relationship filter a DB preference
feature request #9712: Handling non image media in IIIF manifests
feature request #9716: editing of image source external links possible in details editor
feature request #9717: show media source external links in media gallery and media page
feature request #9718: add media source external links to IIIF item meta data
feature request #9771: Implement Cdm2Cdm for vocabularies
feature request #9787: option to show external kml layers in the taxon/specimen page
feature request #9788: Add full stop at the end of bibliographic reference citations in dataportal
feature request #9829: Secure writing methods for CdmPreferences with role Role_Project_Manager
feature request #9839: Show distanceToGround on the occurrence page
feature request #9840: Add the possibility to enter new server
feature request #9858: Add update result to aggregation algorithms
feature request #9859: Password Recovery UI
feature request #9862: centralized password policy enforcement validator
feature request #9877: Account Registration UI
feature request #9879: Short title for field and derived units
feature request #9884: Vaadin UI-disabled reporting
feature request #9888: Implement RIS import for book sections
feature request #9889: Implement deduplication for RIS import
task #2859: TaxonNameBase.getReferenceYear does not return inRef year
task #4338: [MASTER] Handle abbreviated title and protected cache correctly in TaxEditor
task #6137: Urgent imports
task #6208: implement synonymy service responding with DTO
task #7356: setup selenium test suite for cdm-vaadin
task #8057: Upgrade to debian 10
task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
task #8118: Update MySQL drivers
task #8391: Name page shows complete name information (II)
task #8419: harmonization of the different specimen representations
task #8716: Configure taxeditor to run with GTK2 in linux
task #8841: clean up application context configuration
task #8952: Change data set to dataset
task #9014: Unparsable name strings
task #9132: Update cyprus images to Scaler default API and add thumbnails
task #9141: setup IP connection rate limiting per IP address
task #9201: Titelcache creation for nested collections - DISCUSS
task #9203: Filter out generated MediaRepresentations if a part with exactly the same URL already exists.
task #9219: Revert: requests with %2F in URL are rejected by apache
task #9228: Adaptations to allow editing Centaurea in Flora of Greece
task #9231: Create statistics for Euro+Med
task #9233: provide feedback mechanism for euro+med
task #9275: Cleanup apache configuration from "AllowEncodedSlashes On"
task #9300: Name Page: harmonize media specimen lectotype representations
task #9323: discuss display of ExternalLink.description
task #9400: Check whether it is possible to set rights to reduce the work to descriptive datasets
task #9431: OccurrenceServiceImpl._findRootUnitDTO(..)
task #9448: Remove all not e4 classes and rename "Remoting..." classes
task #9524: Use non-model objects in database queries for getDistributionInfoFor
task #9569: Delete taxon and delete name should use the same UI and same semantics for deleting names
task #9582: provide runnable dataportal installation bundled with composer
task #9599: remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
task #9637: overcome mixed use of pageNumber and pageIndex
task #9650: Update all titleCaches after upgrade of cache strategies and formatters
task #9653: update system table with new installation profile name and location
task #9711: Further improve matrix performance
task #9837: updadte vaadin to latets 7.* version
task #9842: Improve performance for loading DDS (RowWrapperDTO)
task #9849: Remove trailing full stops from specimen titleCaches
task #9852: Use rulebased creation of thumbnail links for Salvador images
task #9886: Create cdmlib modul cdmlib-api
task #9890: Move importDeduplicationHelper to import state
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