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Release 5.12

24 days late (11/18/2019)

15%

202 issues   (10 closed — 192 open)

Time tracking
Estimated time 32.00 hours
Issues by
bug

3/93
feature request

6/79
task

1/29
report

0/1
Related issues
bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
bug #5211: Error when creating new taxon /problem with sortindex in taxon tree
bug #6036: Problems with deleting type names
bug #6276: Nomenclatural references show parsed date string instead of publication year
bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
bug #6499: Remaining issues to include pages in bibliographic reference titleCaches
bug #6523: Correct display of misspellings in synonymy
bug #6585: Combo menu items have orange font
bug #6629: TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
bug #6766: maven profile to build cdm-vaadin for production purposes
bug #7084: display SpecimenOrObservationBase.preferredStableUri in DataPortal
bug #7107: "Omit level" in distribution hierarchy should not supress distributions source reference
bug #7577: Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor
bug #7690: adapt available typedesignation editors to name rank
bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
bug #7711: Bugs in media gallery
bug #7766: Remaining issues for using relationship DTO webservice in portal
bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
bug #7994: Implement allowDuplicates for term trees in TaxEditor
bug #8027: Hibernate fails to obtain transaction-synchronized Session for thread and brings taxeditor in unrecoverable state
bug #8035: Vaadin Collector team layout
bug #8052: implement selenium tests for registration items lists
bug #8068: Selenium test for Reference page
bug #8132: phycobank cdm-server instance problems with db connections
bug #8154: NameController.doGetTaggedName fails due to [UPDATE] not permitted for 'anonymousUser' on Person
bug #8205: SpecimenTypeDesignationsEditor: Fist selection of mediaReference gets lost
bug #8221: When changing nomenclatural code the name detail elements are not available anymore
bug #8233: [Follow up] Creating type duplicates
bug #8244: Skip validation of ToManyRelatedEntitiesComboboxSelect when editor is read only
bug #8254: Add term information to state dropdown in CharacterMatrix
bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
bug #8277: Username (and other fields) should allow c&p
bug #8313: Multiple categorical data get deleted when clicked on in Character Matrix
bug #8328: Unpublished record visible in Portal if related name is published
bug #8338: Newly created structural modifier terms are not available in details view
bug #8364: ext-links module: problems
bug #8367: Advanced media view is not available for term media
bug #8371: When creating a new term for a vocabulary the term should have the focus afterwards
bug #8375: ReferenceEllypsisFormatter produces too long stings in specific cases
bug #8416: Array to string conversion problem in render array prodiced for specimen page
bug #8417: LazyInitializationException in TermDTO for media
bug #8421: icons in compose_specimen_table_top_down() are not visible
bug #8427: LazyInitializationException in NameController.doGetTaggedFullTitle()
bug #8431: missing status bar for cdm light export
bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used
bug #8493: hide taxon page general tab TOC block if empty
bug #8494: Better ABCD Preferences Page
bug #8498: Set Flags should show the current status of the flags
bug #8511: The structure path in the character details view should have a line break
bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
bug #8531: factual data and media view always opened when opening taxon
bug #8547: newly created article with new journal does not appear in selection dialog
bug #8548: Layout when opening Reference editor (new journal, new book, new thesis)
bug #8552: Avoid DB call for matrix state DB preferences
bug #8562: Remaining issues for preference pages
bug #8566: Recursive aggregation for common parent taxon does not work if not in data set
bug #8567: resitration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
bug #8579: Search in PhycoBank Portal with error
bug #8620: Improve pro parte synonym search for dataportal
bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
bug #8659: Taxon navigator: not refreshed after ABCD file import
bug #8660: Generic menu creation for Term trees
bug #8662: "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
bug #8663: LIE when trying to save a tree node
bug #8670: Unwanted distribution aggregation/display on 2 levels
bug #8681: Fix sect. parsing
bug #8682: cdm-server debian packages configured for jemalloc
bug #8684: ITaxonService.findTaxaByName misses initStrategy Parameter
bug #8687: Description page must show all DescriptionElement subclasses
bug #8702: Remove Not null constraint for uuid in AUD tables
bug #8717: Improve display of PolytomousKey nodes which have a feature
bug #8718: polytomousKey page: better handling of invalid uuids
bug #8719: installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
bug #8728: Specimen import via BioCASE silently fails
bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
bug #8736: LazyInitializationException (LIE) during adding Specimens to Matrix Editor
bug #8737: delete taxon included in two classifications deletes taxonname
bug #8738: CdmLink.startPos and .endPos should allow Null
bug #8739: remaining issues for description detail page
bug #8744: LazyInitializationException (LIE) saving the Character Editor
bug #8745: Type designations of synonyms missing on specimen page
bug #8746: Multiple representations problem on saving Matrix Editor
bug #8748: Supported state vocabularies should be ordered
bug #8752: Matrix Editor: Can fails showing all SpecimenDescriptions in the dataset
bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
bug #8757: ArrayIndexOutOfBoundsException in term combo
feature request #4570: Add vocabulary for Specimen Description Features
feature request #4817: German translation for term types
feature request #5050: revise the subAreaPreference rule for filtering Distributions
feature request #5176: TransmissionEngineDistribution can run on selected taxa
feature request #5550: Add languages to the editable terms
feature request #5873: Implement rights&roles for TaxEditor distribution editor
feature request #6676: A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
feature request #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
feature request #6760: specimen import configuration
feature request #6774: Implement OWL export
feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
feature request #6866: Improve specimen page
feature request #7637: Handle intext references in CDM light
feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
feature request #7696: use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service
feature request #7701: Add link to typified name on specimen page of data portal
feature request #7747: Enhance display for URI element
feature request #7860: [Master] Remaining E+M editor issues
feature request #8044: Add "Move to..." menu to term editor
feature request #8086: registration submission endpoint implemented
feature request #8095: response model for registration submission webservice
feature request #8122: Implement selection of modifier vocabulary for structures and properties
feature request #8134: Implement verbatim type information in dataportal
feature request #8137: Implement sources for type designations in data portal
feature request #8156: Registration items show type status in bold letters
feature request #8163: RegistrationService.setStatus() method implemented
feature request #8165: enable log4j jmx for cdm-server
feature request #8187: Use Spring Environment instead of custom code in AbstractWebApplicationConfigurer
feature request #8195: TaxonNamePopupEditor: offer Reference and RuleConsidered fields for replaced synonyms
feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
feature request #8207: RegistrationUI: helps avoid name duplicates
feature request #8230: NameTypePopupEditor: genus selectable as the name type for higher ranks
feature request #8236: [DISCUSS] Should recommended modifiers also hold for DescriptionElements
feature request #8238: Allow interoperability between term trees
feature request #8289: Add "Open in RefObj view" to term editor context menu
feature request #8299: add typification column to scientific name and homotypical group in cdm light
feature request #8307: display fossil in the context of the taxon name
feature request #8309: Implement preferences with predicate and subject in local preferences
feature request #8317: Omit ex-author if ex-author=author
feature request #8325: Create CDM Instance with all CDM core terms
feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
feature request #8378: Show placeholder for asynchronously loaded images in details view
feature request #8396: make "not in classification warning" configurable
feature request #8411: base path for export/import path selection
feature request #8412: Remaining issues for cdm light export (II)
feature request #8413: Abcd import with file containing list of unit ids
feature request #8432: Improve "default" feature tree handling
feature request #8450: Character matrix UX
feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
feature request #8469: Open PolytomousKeyGenerator issues
feature request #8471: Computed descriptions should be disabled in TaxEditor
feature request #8472: Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
feature request #8477: Implement support for TermCollection.isFlat in TaxEditor
feature request #8478: Follow up ticket for update empty name in source handling in TaxEditor
feature request #8489: Further issues for DB preferences
feature request #8490: Sitemap implemented
feature request #8491: show higher taxon graph in name and taxon pages optionally
feature request #8554: Allow drag&drop from character into FeatureTrees
feature request #8624: Add abbrev title cache to search in bulk editor
feature request #8655: Handle duplicates in term tree editor
feature request #8661: "New DataSet" should ask for label and then open the dataset
feature request #8665: Rename "New" to "New Tree" in Term Tree editors
feature request #8677: Add distribution aggregation to set subtree menu
feature request #8680: Unify long running tasks framework
feature request #8686: Support CdmLink sources in bibliography
feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
feature request #8694: Specimen online import - Specimen Search: import button layout problem on linux KDE
feature request #8703: Move TermSearch and Specimen(Import)Search to editor area of taxeditor
feature request #8713: Improve structured descriptive data aggregation
feature request #8721: Use webservice to get all biocase provider listed by gbif
feature request #8724: Allow OriginalSource to link to Taxon
feature request #8749: Add proposalProvider to AbstractComboElement
feature request #8755: Show all structure/property trees in CharacterEditor
feature request #8756: Refresh button for structure tree and property tree in Character Editor
feature request #8758: Aggregated Descriptions: order states by frequency
feature request #8759: Description aggregation : suppress state present when more details are available
task #4338: [MASTER] Handle abbreviated title and protected cache correctly in TaxEditor
task #4564: [Post 3.4] Check if originalLabelInfo is handled correctly in CdmDataPortal
task #7890: Display of name relations in the data portal [master ticket]
task #8047: Remaining issues in TaxDistributionEditor
task #8055: Correct formatting for invalid designations
task #8057: Upgrade to debian 10
task #8081: Complete removal of redmine communication hub instances
task #8087: improve response model of registration/identifier/{registrationID}/status.json web service
task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
task #8109: Concept for linking from taxon entries to name pages
task #8130: Check if related feature data is cleared when supported facts type is changed
task #8201: test all delete functionality in the RegistrationUI
task #8391: Name page shows complete name information (II)
task #8419: harmonization of the different specimen representations
task #8420: improve admin settings for specimens representations
task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
task #8468: Remove old InapplicableIf tables
task #8483: Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
task #8501: setup OWASP vulnerability checker for projects
task #8635: install collectd + facette for server monitoring
task #8658: defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description"
task #8671: Distribution in E+M (BM) on different levels
task #8672: Source handling during (distribution) aggregation
task #8679: Further unify description aggregation methods
task #8683: TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
task #8716: Configure taxeditor to run with GTK2 in linux
report #8379: Review strange specimen implementations
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