UTIS

Merge branch 'hotfix/1.2.2'

setting release version 1.2.2

using the correct swagger annotations

Merge branch 'release/1.2.1'

bumping version number to 1.2.1

Perfomance improvment for GBIFBackboneClient:
- avoiding duplicates in subProvidersLists
- avoid loading the subProvidersList for each request

copy constructor for ServiceProviderInfo

ref #6189 plazi: running store updates in separate thread

bumping version to 1.2.1-SNAPSHOT

ref #6189 plazi: improved resilience by retrying failed download attempts

ref #6189 plazi: classification mode implemented and better mapping of plazi data to utis model

ref #6189 plazi: scientificName* search modes implemented

uncritical bug in EUNIS_Client fixed

fixing GBIFChecklistTest methods

ref #6189 findByIdentifier implemented

ref #6189 plazi: improved resilience during import and tests implemented

ref #6189 import of rdf and continuous updating of store working

ref #6189 downloading of rdf resources from plazi implemented

fix #6189 per client adapter store locations

ref #6189 plazi: lastModified detection implemented

first commit of PLAZIClient with test - not tested

relaxing max result limit for BgbmEditClient - requires cdm 4.4.0 to be released

bumping version to 1.3.0-SNAPSHOT

Merge tag '1.2.0' into develop

tagging release 1.2.0

Merge branch 'release/1.2.0'

bumping version to 1.2.0

improving ambiguous test case

setting problematic tests to ignore (these clients are not officially supported in utis)

fix #16 optional inclusion of the parentTaxon into the search responses fully implemented

solving #17 and preparing #16 \n - #17 hide the empty higherClassification property from the taxon object serialization\n - #16 optional inclusion of the parentTaxon into the search responses

fixing higherClassification mode in EUNIS Client

higherClassification action test for PESIClient

test for PESIClient

fixing #15 NPE during classification/{uuid}/parent request

finally the correct secReference can be shown for PESI

separating search modes and classification actions - updating the ServiceProviderInfo

separating search modes and classification actions

fixing available slf4j logging providers

updating links to the new host name cybertaxonomy.eu

improvements to the PESI sources implementation

version

moving version detection into its own class and simplifying store folder choice

fixing store folder creation

#13 testing pager function of worms

version specific store locations

reverting dev setting

using the new getPESISourcesByGUID() method to retrieve the sources and the secReference

updating PESI SOAP client to latest version

using static logger instances in clients

notes regarding neo4j

taxonomicChildren implemented for the EDIT name cataloge service

BgbmEditClient returns the full higher classification

higher classification no longer is reported with search results
Reasons:

• performance problems with WoRMS now and with PESI in future
• separation of search and classification services

fixing bug in LSID detection

#8 providing the full classification for WoRMS responses

#7 initial implementation of taxonomicChildren search mode, already working for WoRMS

fixing bug regarding writing the last updated timestamp and writing also a log of timestamps

taxonomic status to accepted of accpted taxa in ENUS Client

taxonomic status to accepted of accpted taxa in ENUS Client

adding further missing data in ENUS Client

fixing accordingTo literal for EUNIS_Client

removing unused classes

fixing query processing of EUNIS_Client which no longer has subchecklists

renaming EEA_BDC_Client to EUNIS client and removing subchecklist since this makes not much sense with this provider

model changes: TaxonName.fullName -> scientificName; Classification now is ordered list of HigherClassificationElements

flexible selection of utis.home folder for development and production mode

utis.home folder the location for sore data adapts to system environment

setting version to 1.2.0-SNAPSHOT for dev branch

Merge tag '1.1.2' into develop

release tag 1.1.2

Merge branch 'release/1.1.2'

setting release version in pom.xml to 1.1.2

commenting test for TDBStore

completely removing all apache jena dependencies, keeping TDBStore.java as TDBStore.java.hidden

completely removing all apache jena dependencies, keeping SparqlClient.java as SparqlClient.java.hidden

reverting pom version back to 1.2.0-SNAPSHOT

Merge tag '1.1.1' into develop

release tag 1.1.1

Merge branch 'release/1.1.1'

setting pom to hotfix release version 1.1.1

better detection of synonyms to avoid adding the accepted taxon as its own synonym

disabling automatic execution of the jaxb2 maven plugin

bumping development version to 1.2.0-SNAPSHOT

Merge tag '1.1.0' into develop

release 1.1.0

Merge branch 'release/1.1.0'

setting project version for release to 1.1.0

avoiding NPE

fixing probelm in genus_test

adding taxon url to result

resetting CHECK_UPDATE_MINUTES to once a day & fixing missing subchecklistInfo in responses of the EEA_BDC_Client

removing useless tests

easier switching between rdf download locations & adding support for genus resolution

implementation of a manager for neo4j stores, the ClientManager has been turned into ClientFactory

cration of a ClientManager to provide quasi singleton beans if client classes

automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)

automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)

commenting out yourkit profiler reladed lines to avoid compilation problems

renaming project and packages to cybertaxonomy.org/utis/

gathering classification information implemented with test

further cleaning up

cleaning up: removing remains from SPARQL client implementations

cleaning up old TODOs