Project

General

Profile

CommonDataModel » History » Version 79

Katja Luther, 03/30/2022 01:18 PM

1 1
2 79 Katja Luther
3 1
# Common Data Model
4 78 Andreas Müller
5 79 Katja Luther
The Common Data Model (CDM) is the domain model for the core EDIT components. The CDM is primarily based on the [TDWG Ontology](http://rs.tdwg.org/ontology/voc/.) But other models and standards (see [[TaxonomicDataStandards]], [[BibliographicalDataStandards]], [[SpecimenOrObservationStandards]]) have influenced the modelling too.
6 1
7
8 79 Katja Luther
{{toc}}
9
10
{{child_pages(depth=1)}}
11
12
13 2 Markus Döring
14 1
15 30 Markus Döring
16 1
## Scope
17 30 Markus Döring
18 49 Markus Döring
Basically the CDM covers all the data exchanged in the platform. As most applications require additional data, options to extend the model need to be provided. 
19 1
20 66 Andreas Müller
The [CDM](http://cybertaxonomy.eu/cdm/latest/) covers the following object types (classes), grouped by packages:
21 19 Markus Döring
22 1
23 27 Markus Döring
![](http://cybertaxonomy.eu/cdm/latest/EARoot/EA1/EA42.png)
24 1
25
----
26 31 Markus Döring
27
## Model Documentation
28 1
29 38 Markus Döring
### CDM Version 1.0
30 36 Markus Döring
31 66 Andreas Müller
The [**first version**](http://cybertaxonomy.eu/cdm/v1/)  of the CDM has been completed and version:"CDM UML 1.0" reached. The modelling was done with Enterprise Architect and resulted in annotated UML class diagrams. The model is also available for download: attachment:"edit_cdm.eap".
32 50 Andreas Müller
33 1
34 50 Andreas Müller
### CDM Version 1.4
35
36 66 Andreas Müller
 [**Version 1.4**](http://cybertaxonomy.eu/cdm/v14/) of the CDM has been completed together with the deliverable D11. The modelling was done in Java and import into Enterprise Architect. The model is also available for download: attachment:"edit_cdm_14.eap".
37 21 Markus Döring
38 40 Markus Döring
Since the first version of the CDM was purely modelled in UML with implementation in mind, but no real world use yet, implementing the model in Java code has required changes all over.
39 56 Anahit Babadshanjan
40 1
Since the freeze of version 1.0 we are primarily maintaining the model in the source:"trunk/cdmlib/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model" and derive the UML documentation in Enterprise Architect from the source code. 
41
42
To generate the UML model automatically from the Java code EA's import source-code feature was used that synchronizes classes by namespace (_in EA7 project browser "Common Data Model"-"Java Model" -> right click ->Code Engineering->Import Source Directory_). 
43 56 Anahit Babadshanjan
44 1
### CDM Version 2.0
45
46 72 Andreas Kohlbecker
[**Version 2.0**](http://cybertaxonomy.eu/cdm/v20/) of the CDM.
47 56 Anahit Babadshanjan
48 66 Andreas Müller
49 1
### CDM Version 2.2
50 59 Katja Luther
51
52 72 Andreas Kohlbecker
[**Version 2.2**](http://cybertaxonomy.eu/cdm/v22/) of the CDM.
53 59 Katja Luther
54 64 Andreas Müller
### CDM Version 3.0
55 1
56 72 Andreas Kohlbecker
[**Version 3.0**](http://cybertaxonomy.eu/cdm/v30/) of the CDM.
57 1
58 64 Andreas Müller
59 1
### CDM Version 3.1
60 70 Andreas Müller
61 72 Andreas Kohlbecker
[**Version 3.1**](http://cybertaxonomy.eu/cdm/v31/) of the CDM.
62 70 Andreas Müller
63
### CDM Version 3.3
64 64 Andreas Müller
65 72 Andreas Kohlbecker
[**Version 3.3**](http://cybertaxonomy.eu/cdm/v33/) of the CDM is the most current version.
66 64 Andreas Müller
67 59 Katja Luther
The latest documentation of the model can be found in *JavaDocs:cdmlib-model*. We also keep track of the major *CdmChanges*.
68 45 Markus Döring
69 43 Markus Döring
70 45 Markus Döring
### FAQ
71
72
Additionally to the UML and Java documentation we maintain a *CdmFaq*.
73 8 Markus Döring
74 1
75
----
76 45 Markus Döring
77 3 Markus Döring
## Contributing
78 49 Markus Döring
79 1
This wiki describes the latest stage of the modelling efforts. Discussions are being held on a mailing list dedicated only to the CDM. We invite everyone to join the mailinglist to follow discussions, raise questions or even suggest changes to the model. 
80 47 Markus Döring
81 1
82 72 Andreas Kohlbecker
**mailto:cdm-edit@mnhn.fr** 
83 18 Markus Döring
84
85 1
The list has a public online archive that stores the discussions so decisions can be tracked back in time. We invite anyone to participate in the discussion, you can subscribe to the mailing list through the webinterface of the archive:
86
87 49 Markus Döring
88 45 Markus Döring
https://webmail.mnhn.fr/wws/arc/cdm-edit 
89
90 1
91 18 Markus Döring
As we sometimes cannot apply changes immediately to the model, we also keep track of issues to be done.
92 1
93
All notes regarding changes or additions to the CDM are managed with [[report13|tickets in TRAC]].
94 18 Markus Döring
95 38 Markus Döring
96 46 Markus Döring
## Partner
97
98
We try to collaborate with other projects outside of EDIT to base its development on a stable long-term perspective. Apart from shared software development it is essential that we test the CDM with different, diverse datasets. 
99
100
Our main collaborators so far are:
101 45 Markus Döring
102 44 Markus Döring
* EDIT WP6 Exemplar groups, see also [[CdmDataportal]]
103 1
  * [Palmweb](http://www.palmweb.org,) Kew
104 45 Markus Döring
  * [Cichorieae](http://wp6-cichorieae.e-taxonomy.eu,) BGBM
105 1
  * [Milichiidae](http://www.milichiidae.info/,) NHM
106
* [CATE project](http://www.cate-project.org/,) London
107 49 Markus Döring
* PESI, "Pan European Species-directories Infrastructure"
108 1
  * [Euro+Med PlantBase](http://www.emplantbase.org)
109 45 Markus Döring
  * [Fauna Europaea](http://www.faunaeur.org/)
110
  * [European Register of Marine Species (ERMS)](http://www.marbef.org/data/erms.php) 
111 44 Markus Döring
* [Key2Nature](http://www.key2nature.eu)
112
113
114
## Releases
115 45 Markus Döring
116 44 Markus Döring
The CDM is released as part of the [[CdmLibrary]]
117
118
----
119 1
120
## Background Information
121
122
* [[TaxonomicGlossary]] - general taxonomic & nomenclatural glossary
123
* [[ZoologicalAdaptation]] - changes required for the [[BerlinModel]] to deal with zoological data
124 45 Markus Döring
* [[ZooCode]] - the difference of the zoological code compared to the botanical code
125
* [[NomenclaturalStatus]] - descriptions of the different nomenclatural status codes both for botany and zoology
126
* [[TaxonomicDataStandards]] - other taxonomic models and standards
127
* [[BibliographicalDataStandards]] - bibliographical models and standards
128
129
### Modelling Guidelines
130
131
* [[BestPractices]] - best practices for the EDIT UML modelling and coding conventions for developers
132 1
* [[OntologyModelling]] - general remarks and links to OWL