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CDM Platform Roadmap Archive

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Current Roadmap

see CdmPlatformRoadmap

CDM Platform 5.20 (released Feb 10th, 2021)

Issues: 17

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Library
    • support for pollen, leafs, and trichomes as tissue samples
    • fix formatting for taxa for taxa with secundum detail information
    • formatting for DNA Sample
    • bugfixes
    • role to allow setting the publish flag added
  • - Data Portal
    • bugfix related to missing source references of distribution data if aggregated data is involved
  • - TaxEditor
    • if a new synonym is added the publish flag now gets the same value as the accepted taxon
    • bugfix for the reference select dialog
  • - Web editor
    • Phycobank registration UI
      • designation refences for name and specimen type can now be edited
    • Distribution editor
      • fix exception when using textual taxon filter

# Subject Status
  cdm 1 Collapse all/Expand all
9434 Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary Closed Actions
  cdm-dataportal 1 Collapse all/Expand all
9143 Distribution data sources are missing if multiple distributions exist Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
9461 Filter in vaadin distribution editor does not work Resolved Actions
9324 Enable designation reference editing in name type designation Closed Actions
9301 SpecimenTypeDesignationEditor: Add fields for citation and citationDetail Closed Actions
9290 stop setting Registration.citation as citation for TypeDesignations in all type editors by default Closed Actions
8975 Name Status filtered in UI Closed Actions
8522 Make type status mandatory in Name type designation editor Closed Actions
  cdmlib 4 Collapse all/Expand all
9457 Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache() Closed Actions
9429 Taxon cache strategy handles sec details 2x in some cases Closed Actions
7529 Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH Closed Actions
5095 Fix failing dozer related tests Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
6324 fix dozer mapping after removal of synonym relations and after using TaxonNode Closed Actions
  taxeditor 4 Collapse all/Expand all
9443 Improve handling of TissueSamples and others in SpecimenTreeEditor Closed Actions
9426 Set publish flag for Synonyms in accordance with accepted taxon publish flag Closed Actions
9351 Include new locations for cdmlib-print and cdmlib-remote in jenkins release script Closed Actions
6450 New reference with only the protected titleCache set is not found in reference select dialog Resolved Actions

CDM Platform 5.19 (released Jan 27th, 2021)

Issues: 41

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Library
    • fix handling of 2 person teams in short citations (author + year)
  • - Data Portal
    • specimen lists further improved (work in progress)
      • Specimens without assigned field unit are now visible in the tree and "compresses" table view
    • remove disabled classifications from advanced search classification filter
  • - TaxEditor
    • show taxon name for references used as nomenclatural references in referencing objects view
    • distribution editor
    • improve sorting (now sorting is equal to sorting in taxon navigator)
    • new taxon dialogue
      • fix ignored publish flag
      • fix handling of reuse taxon in New Taxon dialogue
      • fix exception when reusing a name
    • terms
      • fix copy&paste in term tree editor
      • dirty flag not set when moving a feature in feature tree editor
      • add "open in " menu to context menu in term/term tree editor
      • main menu for term vocabularies and trees refactored and unified
    • details view
    • improve and fix handling of fields covered by (un-)protected caches
      • fix some inconsistencies
      • use light color for indirect protection
      • use various colors if >1 caches are using the field
    • media
      • changes not persisted in media bulk editor
      • missing reference detail in media specimen details view
      • update (unprotected) titlecache in media details view when underlying data is changing
      • fixing multiple bugs in media view
    • agents (person, team, instituion)
      • improve converting person to team handling (especially handling of cache fields)
      • fix duplicate entries in agent search dialogue
    • descriptive data sets navigator ordered alphabetically
    • further bug fixes:
      • fix incorrect state of taxon navigator toggle button which indicates if the taxon navigator jumps to the taxon that has the focus
      • remove area level from distribution label for distribution areas not having a level
      • alphabetic ordering of reference types in dropdown lists
      • exception when saving parsed hybrids in name editor
      • exception when adding specimen to character matrix

# Subject Status
  cdm-dataportal 5 Collapse all/Expand all
9403 cleanup function cdm_related_taxon() from used paramerters and css class attributes Closed Actions
9397 Derivate tree view must show DerivedUnits even if the FieldUnit is missing Closed Actions
9379 exclude disabled classifications from advanced taxon search form Closed Actions
9213 specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists Closed Actions
7704 Dataportal specimen table should be able to show DerivedUnits without a FieldUnit Closed Actions
  cdmlib 8 Collapse all/Expand all
9415 DNA and other Derivatives missing in DerivedUnitDTO Closed Actions
9395 DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units Closed Actions
9389 further improvement and revision of derivative filtering by type and DerivedUnitDTO Closed Actions
9384 DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members Closed Actions
9366 Specimen type designation with specimen having only collection name but not collection code does not show collection information Closed Actions
9350 Create new taxonnode ignores the publish flag Closed Actions
9253 revise OccurrenceServiceImpl.findFieldUnitDTO(..) Closed Actions
7612 CacheStrategy for MediaSpecimens Duplicate Actions
  cdmlib-remote 1 Collapse all/Expand all
9387 LazyInitializationException (LIE) in NameController.doGetTypeDesignationsInHomotypicalGroup() Closed Actions
  taxeditor 27 Collapse all/Expand all
9422 Improve performance during Preferences startup Closed Actions
9413 DNA details lable "Ratio of absorbance ..." corrected Closed Actions
9412 Fix reuse existing name in NewTaxonWizard Closed Actions
9405 Fields set to irrelevant for cache should be set by state only Closed Actions
9391 If named area level does not exist remove the level information Closed Actions
9382 For nomenclatural source show taxonname in referencing objects view Closed Actions
9375 Alphabetical order for reference type drop down Closed Actions
9372 in media details view unprotected title cache is not updated when underlying data is changed Closed Actions
9371 Media bulk does not persist data anymore Closed Actions
9369 Reference Detail is missing in MediaSpecimen details view Closed Actions
9365 Reuse taxon does not work in new Taxon dialogue Closed Actions
9360 Parsed hybrids can not be persisted Feedback Actions
9356 Comparison method violates its general contract for SourceComparator and TypeDesignationComparator Closed Actions
9354 Sorting in distribution editor is broken Closed Actions
9353 Copy & Paste creates dirty data in term trees Closed Actions
9346 Adding specimen to character matrix fails sometimes Closed Actions
9344 Datasets in Descriptive Dataset Navigator should be ordered Closed Actions
9338 Restructure term menus Closed Actions
9264 Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button Closed Actions
9208 Move cdmlib-print and cdmib-remote to taxeditor.printpublisher Closed Actions
9142 The Agent search dialog shows duplicated entries Closed Actions
9140 Deleting an image forgets moving operation Resolved Actions
8874 move taxon is reverted when taxon is edited afterwards Resolved Actions
8289 Add "Open in RefObj view" to term editor context menu Closed Actions
7990 Moving a feature via d&d does not make the Feature Tree Editor dirty Closed Actions
7711 Bugs in media gallery Resolved Actions
5163 Converting persons to team members may result in "-empty team-" Closed Actions

CDM Platform 5.18 (released Dec 3rd, 2020)

Issues: 83

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Model
    • "single sources"
      • some data that refer to a single source only are now handled as full sources (before it was only a reference and a reference detail), with possibility to add further information like name used in source and external links;
      • protologues/original publications handled as external link for the nomenclatural source
      • original spelling handlied as name used in source of nomenclatural source now (before it was a name relationship)
    • added new nomenclatural status "comb. ined", protected, in sched., pro syn., orth. var. (as status)
    • labels updated for "is blocking name for" and "is isonym of", is correct spelling for, is earlier isonym of, conservation designated ; abbreviations updated for op. utique oppr., orth. cons., orth. cons. prop.
    • abbreviations added for "Flowering Period" (Fl.) and "Fruiting Period" (Fr.)
    • add [m] as predefined default measurement unit for altitude
    • improved handling of nomenclatural standing of a taxon name
  • - CDM Library
    • improve formatting with citation detail
    • improved type designation formatting
    • cloning of taxonomic subtrees (not yet available in TaxEditor)
      • more configurable
      • cloning of subtrees, not only classifications, possible
    • major upgrade of third party code
  • - Data Portal
    • specimen lists and pages fully refactored and improved (work in progress)
    • map serives improved
    • adapt sort order of taxon tree to sort order in TaxEditor
    • display of name facts improved
    • new base font size
    • improved rendering of footnotes
    • fix missing nomenclatural status on name pages and registration pages
  • - Exports
    • Several major and minor issues fixed in cdmlight export (#9262, #9256)
    • less cryptic default name for cdmlight export file
  • - TaxEditor
    • "Single Sources"
      • objects with single sources (like taxon name nomenclatural source or name relationship source, etc.) are handled as full sources now including "Name in source", "original Information", "external links" etc.
      • protologues/original publications were moved to the new nomenclatural source section as external link for the nomenclatural source
      • original spelling now available in nomenclatural source section
    • term tree (hierarchy) editors and character editors fully refactored and many bugs fixed, also preferences for term tree display added
    • reduce download size and preparation for further reducing download size
    • remove incorrect "invalid designation" handling
    • assist for secundum handling when making a synonym an accepted taxon
    • add LSIDs to persons and references
    • improve default reference type for in-reference creation dialogue (depending of the original reference type), e.g. journal for articles
    • bug fixes:
      • missing dropdown list if no rank was selected yet in name details view
      • adding derived units to derived units (e.g. DNA sample to specimen) is possile again in specimen tree editor
      • error in LSID handling
  • - Web editor (Phycobank registration UI)
    • annotations for names and field units visible
    • #8859

# Subject Status
  cdm 15 Collapse all/Expand all
9311 Update some (abbrev) labels for nomenclatural status types Closed Actions
9282 Add nomenclatural standing Closed Actions
9272 Add missing nomenclatural status Closed Actions
9263 Unify case for type designation status Closed Actions
9225 Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass Closed Actions
9124 Altitude feature should have [m] as measurement unit by default Closed Actions
9121 Add abbreviations to Feature Closed Actions
9120 Update script for flowering period supports temporal data Closed Actions
9094 Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource Closed Actions
9062 Remove StatisticalMeasurementValue.value_old Closed Actions
8326 update labels for is blocking name and is isonym Closed Actions
6591 Use name used in source for original spelling Closed Actions
6589 Handle protologue as original source with URI link Closed Actions
6581 Make all microreferenced references OriginalSources Closed Actions
5795 [DISCUSS] Do we need comb. ined. as a nomenclatural status? Closed Actions
  cdm-dataportal 19 Collapse all/Expand all
9306 Registration result list: supress "designated by" reference in portal Closed Actions
9265 Adapt dataportal to new protologue handling Closed Actions
9261 LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes() Closed Actions
9260 error in pages.inc calling compose_taxon_node_status() Closed Actions
9249 compact display of collection information Closed Actions
9240 nomenclatural status missing in name and registration page Closed Actions
9235 Footnote key for multiple cdm entities need to be rendered together Closed Actions
9234 Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry() Closed Actions
9224 openlayers map handles server error per layer and presents a user message Closed Actions
9222 Adapt dataportal to switch to originalSource for remaining single sourced classes Closed Actions
9220 adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability Closed Actions
9209 name page, registration page: show annotations for names and fieldunits Closed Actions
9184 WSOD in advanced search cdm_dataportal/search Closed Actions
8854 Choose new base font size for the portal Closed Actions
8851 display of name facts not appropriate in all cases Closed Actions
8379 Review strange specimen implementations Closed Actions
7685 Add Selenium tests for specimen table in data portal Closed Actions
6356 taxontree sort order as in editor Closed Actions
3978 Specimenview path: Compact representation of exactLocation Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
9318 TaxonNameEditor: nomenclatural reference no longer selectable Closed Actions
9313 LazyInitializationException (LIE) in TaxonNamePopupEditor Closed Actions
9289 LazyInitializationException (LIE) in NameTypeDesignationEditor Closed Actions
9229 TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName Closed Actions
8859 RegistrationItemNameAndTypeButtons invalid regex pattern Closed Actions
7936 Consider complete removal of redmine communication hub code Closed Actions
  cdmadapter 2 Collapse all/Expand all
9262 Several open issues for cdmlight export related to Cactaceae and other Caryophallales Closed Actions
9256 CdmLightExport: NameTypeDesignation string misses parenthesis for authors Closed Actions
  cdmlib 19 Collapse all/Expand all
9322 Remove invalid designation taxon relationship Closed Actions
9280 Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel() Closed Actions
9279 Improve type designation formatting and TypeDesignationSetManager Closed Actions
9267 No sec reference for move change Synonym to accepted Taxon Closed Actions
9258 Use Partial for date in FieldUnitDTO Closed Actions
9257 revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen Closed Actions
9252 Harmonize SpecimenOrOberservationBase related DTOs Closed Actions
9230 Type in preparation of a published name displayed in PhycoBank Portal Name Page Closed Actions
9223 make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess Resolved Actions
9210 invalid format string usage in MediaAutoInitializer Closed Actions
9206 Solve cglib vs. cglib-nodep Closed Actions
9204 Update cdmlib and taxeditor dependencies Closed Actions
9194 Make RelationshipBase and NomenclaturalStatus reference OriginalSource Closed Actions
9103 missing exception handling in TaxoNodeDto Closed Actions
8458 document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO() Closed Actions
7862 Improve documentation on TaxonGraphHibernateListener and related classes Closed Actions
6623 formatter for bibliografic citations with citationDetail Closed Actions
5794 Move other invalid names to the end Closed Actions
4866 Implement clone method for complete classifications Closed Actions
  cdmlib-remote 7 Collapse all/Expand all
9335 termTree webservice response misses titleCache Closed Actions
9259 reduce fields in TermBase json serializations Closed Actions
9254 portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception Closed Actions
9238 pure entities in DerivateDTO.derivates may cause LIEs Closed Actions
9218 Change /registrationDTO/identifier/... signatures to use query parameters instead Closed Actions
9134 Rule based creation of additional media representations "on the fly" Closed Actions
8423 OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives Closed Actions
  data 1 Collapse all/Expand all
9082 Update script for old empty Partials handling Closed Actions
  devOps 1 Collapse all/Expand all
8635 install collectd + facette for server monitoring Closed Actions
  taxeditor 13 Collapse all/Expand all
9307 Preferences for display of termtrees and entries Closed Actions
9299 Add LSID to author and reference details Closed Actions
9297 Improve name of zip file for cdmLightExport Closed Actions
9286 Re-connect and change user should be disabled if no datasource is connected yet Closed Actions
9266 Remove protologue section from TaxEditor Closed Actions
9215 Drop down for empty rank does not work Closed Actions
9199 Adapt TaxEditor to switch to originalSource for remaining single sourced objects Closed Actions
9192 Layout issues for source in taxonnode details Closed Actions
9189 Move datasource view to taxeditor.local Closed Actions
8928 Swap menu entries for specimen bulk editors Closed Actions
8774 Reimplement term tree editors to implement the general save strategy Closed Actions
8547 Default type of a newly created inReference should depend on the type of the reference Closed Actions
6947 Incorrect error for LSID field Closed Actions

CDM Platform 5.17 (released Aug 19th, 2020)

Issues: 42

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Portal
    • image viewer
      • improved thumbnail handling
      • automated creation of thumbnail URLs (avoids that always 2 or 3 versions of the image have to be stored in the database)
      • improved image meta data handling
    • possible default copyright statement below image viewer
    • improve handling of annotations and other footnotes like sources
      • some more annotations and sources are shown now
    • improved map representation for TDWG area maps
    • occurrence maps hidden if no data exists
    • fix bug that misapplied name taxa are not shown and not found in search
    • fix bug that placemark icons are not clickable in map
    • improve test system
  • - CDM Library
    • fix https handling for images
  • - Web Services
    • fix bug in taxon service that misapplied name taxa return no result
  • - TaxEditor
    • reduce download size (by >100MB)
    • make specimen media editable in specimen assistants and in specimen list editor details view (to improve workflow when editing e.g. type specimen)
    • find doubtful taxa without having "?" at beginning of search string
    • new layout for taxon node dialogue
    • additional parameters editable for taxon node placement source
    • move update site to https
    • open in browser button for ORCIDS
    • bugfixes
      • when moving synonym into homotypical group of accepted taxon
      • missing synchronization between taxon node dialogue and name editor
      • problems with name fact preferences
      • exception when editing data in bulk editor
  • - Web editor (Phycobank registration UI)
    • Collection editor extended by name filed
    • Improved authorship inferrence redarding ex-authorship
    • NameTypePopupEditor: Genus can be selectable as the name type for higher ranks
    • Registration items show type status in bold letters

# Subject Status
  cdm-dataportal 14 Collapse all/Expand all
9191 selenium test for specimen tree view (bottom up) Closed Actions
9188 selenium web element wrapper for dynabox Closed Actions
9186 selenium test for specimen top down view (aka devivate_path view) Closed Actions
9181 set and get drupal variables from selenium test suite Closed Actions
9175 hide occurrence map when no data exists Closed Actions
9137 IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet Closed Actions
9128 Default copyright statement below image viewer Closed Actions
9109 Search button font icon broken Closed Actions
9099 placemark icon in kml map not clickable Closed Actions
8850 Show annotations for DerivedUnits (Fieldunits etc) in Registration and other pages Closed Actions
8543 overcome distinction of annotation and other foonotes Closed Actions
8420 improve admin settings for specimens representations Closed Actions
4372 Selenium PortalPage class also suitable for zen-basetheme Closed Actions
2489 strategy for congruent areas in distribution maps: create merged TDWG layer with all levels Closed Actions
  cdm-vaadin 4 Collapse all/Expand all
9182 Sub-collection and Collection vs. Collection and Super-Collection Closed Actions
8317 Omit ex-author if ex-author=author Closed Actions
8230 NameTypePopupEditor: genus selectable as the name type for higher ranks Closed Actions
8156 Registration items show type status in bold letters Closed Actions
  cdmadapter 1 Collapse all/Expand all
9110 Add additional informations to metadata table of cdmLight Feedback Actions
  cdmlib 7 Collapse all/Expand all
9152 PreferencesService caches CdmPreferences Closed Actions
9148 Replace sanselan library by the newer apache commons-imaging Closed Actions
9147 Use StringBuilder in CdmUtils.concat() to avoid performance penalties Closed Actions
9146 filter image metadata by include and exclude lists of key words Closed Actions
9129 cdm property to store a default copyright statement for media items Closed Actions
9105 rename NodeSortMode etc to TaxonNodeSortMode Closed Actions
9000 UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
9198 option in iiif manifest creation to set canvas size to thumbnail size Closed Actions
9193 LazyInitializationException (LIE) in portal/taxon/{uuid} web service Closed Actions
9087 typedesignation/{uuid}/annotations must return pager objects Closed Actions
  geotools - map service 1 Collapse all/Expand all
8310 Issues to solve in E+M shapefile Closed Actions
  taxeditor 12 Collapse all/Expand all
9173 NPE when move synonym into homotypical group of accepted Closed Actions
9172 Missing synchronisation between taxonnode wizard and name editor Closed Actions
9171 Doubtful taxa are not found in bulkeditor Closed Actions
9168 NameFeature selection in preferences are not shown Closed Actions
9166 ClassCastException when editing media in taxon bulkeditor Closed Actions
9138 Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId() Closed Actions
9119 Remove schema create and schema update functionality from datsource view Closed Actions
9118 Change p2 update site to https in Taxeditor Closed Actions
9116 Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue Closed Actions
9065 Add derived unit media to DerivedUnitFacade details view Closed Actions
9040 Implement open button for ORCIDs Closed Actions
5752 Reduce TaxEditor size Closed Actions

CDM Platform 5.16 (released June 30th, 2020)

Issues: 14

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Portal
    • Fix for sortorder of taxon nodes in taxon tree
    • Fix for incorrect link for geo-coordinates in point maps
    • Fix for missing information on taxon pages (see #9095)
  • - CDM Library
    • Improved deduplication of references and authors during name parsing (the relatively empty parsed references and authors are now merged with richer references and authors, which include e.g. also URI, ISBN, lifespan, first name, etc. information)
    • Improved caching mechanism (which hopefully leads to less multiple representation exceptions in TaxEditor)
    • Improved formatting and parsing of dates and periods (now we generally use a format like "30 Jun 2020" which is more language independent)
  • - TaxEditor
    • Setting focus automatically to newly created facts in Fact View
    • Improved reference and author deduplication during creation of new taxa and synonyms
    • Improved handling of malformed URIs
    • Fix bug which threw multiple representation exceptions when editing taxa with a taxon node source (which exists very often in some databases)
    • Fix bug throwing an exception when deleting a classification
    • Fix bug throwing an exception when deleting multiple records in bulk editor

CDM Platform 5.15 (released June 23rd, 2020)

Issues: 83

Downloads: TaxEditor, CDM Server, Data Portal

What will be new?

  • - Data Model
    • TaxonNode has a "status" attribute now instead of flags "doubtful", "unplaced" and "excluded"
      • Allows to use only max. 1 of the above status for the same node
      • "Excluded Notes" changed to => "Status notes" and is valid for what ever status has been chosen
    • Measurement values handled as "BigDecimal" to avoid rounding errors related to floating point algebra and to allow to handle exactness (e.g. 1.6 differs from 1.60)
    • "Available for" attribute for features to distinguish if features are available for taxa, for names and/or for specimen
    • Temporal fact datatype for e.g. flowering periods supporting time periods like (Apr-)May-July(-Aug)
    • New feature "Flowering period"
    • New feature "Altitude" added
    • Rename "later homonym for" to "later homonym of"#
    • "Links" added to main classes like taxa, names, references, authors, ... - these allow adding an unlimited number of URL-links to these objects together with a description what this link is for
    • Key-Value structure for storing media metadata (not yet used)
  • - Data Portal
    • New implementation of the occurrence point display is maps which allows new important features:
      • Field unit information can now be shown.
      • Display of error radius
      • NOTE: More exciting features will come with the following releases.
    • The new image viewer which has been integrated into the dataportal with version 5.13 is now stable and available for all data portal installations. The new image viewer uses the iiif conform Universalviewer. The new viewer adapts to different screen sizes and supports mobile devices.
    • The beautiful Noto font family is now the default for the data portal and brings improved readability and excellent unicode support.
    • The status (unplaced, doubtful, excluded) of a taxon node is now shown on taxon pages and in the classification tree.
  • - CDM Server
    • Improved logging
    • Debian installation package improved
  • - CDM Library
    • Improved permissions for users being allowed to edit all taxonomies
  • - TaxEditor
    • Improved deduplication, especially for taxa entered via taxon node editor
    • Persons: allow editing lifespan
    • Possibility to create or update database schema via connect dialog
    • Improved layout of connect dialog
    • Taxon nodes status with status notes (see Data Model), available in taxon node wizard and in CDM light export
    • Factual Data:
      • Possibility to enter temporal data (phenology)
      • Factual dataset source is shown as (uneditable) source for each fact
      • Facts view: remember expansion state after deleting
      • Remove caching form facts view which (resulted in unexpected results)
    • Descriptive dataset editor and matrix editor:
      • Improve performance of matrix editor
      • Add context menu to matrix editor (and remove preliminary buttons)
      • Fix failing adding of specimen which are not attached to a field unit
      • Remove taxon in descriptive dataset editor only available if taxon has focus
      • Fix bug when selecting a character tree for a descriptive dataset
    • Reference bulk editor table has new included columns: year, in-reference, uri
    • Open link button for entering DOIs in reference details view
    • Features:
      • Possibility to define if a feature is available for taxa, specimen and/or taxon names
    • Improved decimal/rounding handling of quantitative data (e.g. distinguish 9.1 form 9.10)
    • Configurable if the old specimen list editor should be avialable via main menu
    • Bug fixes:
      • Broken media deatils view fixed for "MediaSpecimen"
      • Exception when creating a new taxon
      • Search does find orphaned synonyms now
      • Term search fixed
      • Exception in referencing objects view for TextualTypeDesignations
      • Exception in name details view if name relations were incomplete (no type, no from-name or no to-name)
      • Exception when deleting a descriptive dataset
      • Incorrect context menu for synonyms after moving a synonym into or out of the homotypic group
      • Opened selection dialogs lock editing in other windows
      • Remember expansions state of sections in details view and supplemental data view (this feature was lost for some time)
      • Recently used references list is not emptied anymore after using search dialog for nomenclatural reference
      • Bulk editor: multiple deduplications without saving do now remember all deduplications
      • Some widget is disposed exceptions fixed
      • fix verbatime date not persisted for books

# Subject Status
  cdm 13 Collapse all/Expand all
9043 Add feature "Altitude" Closed Actions
9037 Remove old Feature.supportedXXX columns Closed Actions
9036 Remove old TaxonNode.unplaced/doubtful/excluded columns Closed Actions
9009 Add structure to store media metadata Closed Actions
9005 Make the TaxonNode flags alternatives and change excluded notes to status notes Closed Actions
9004 Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source Closed Actions
8991 Add feature "Flowering Period" Closed Actions
8964 Improve label for homonym relationships Closed Actions
8802 Implement flowering period for Flora of Cyprus Closed Actions
9064 Add ExternalLinks to IdentifiableEntities Closed Actions
9027 Implement Feature.availableFor Closed Actions
9026 Implement Feature.supportedDataTypes as EnumSet Closed Actions
8978 Implement measurement values as BigDecimal Closed Actions
  cdm-dataportal 13 Collapse all/Expand all
9034 simple agent list page with filter function Closed Actions
9010 Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page Closed Actions
8994 universal image viewer fails loading libs when clean urls is disabled Closed Actions
8972 integrate kml layers into map viewer Closed Actions
8900 Layout issues with new image viewer Closed Actions
8888 responsive width for universal viewer Closed Actions
8855 Show error radius in EDIT portal Closed Actions
8134 Implement verbatim type information in dataportal Closed Actions
6878 choose a base font for the portal and deliver it from the drupal module or theme Closed Actions
4488 Specimen data points in map should show FieldUnit information Closed Actions
4257 specimen map should zoom to area of distribution Closed Actions
9076 synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off Closed Actions
8196 display ortographic corrections in name relations as 'corrected name: <nameCache>' Closed Actions
  cdmadapter 2 Collapse all/Expand all
8998 Terms created by abcd import should always be part of a vocabulary Resolved Actions
9031 Adapt CdmLightExport to new TaxonNode.status Closed Actions
  cdmlib 5 Collapse all/Expand all
9058 Hibernate loggs error when creating schema on MySQL due to failing index creation Closed Actions
9047 Search does not return orphaned synonyms Closed Actions
9020 add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE]) Closed Actions
9081 Handle empty Partials correctly Closed Actions
8986 use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
9044 TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms Closed Actions
9023 option to start cdm webapp with hibernate.hbm2ddl.auto = create Closed Actions
6113 webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML Closed Actions
  cdmserver 3 Collapse all/Expand all
7085 cdmserver logfiles getting too big, use RollingFileAppender Closed Actions
3683 add /etc/default/cdmserver to debian package Closed Actions
8682 cdm-server debian packages configured for jemalloc Closed Actions
  data 1 Collapse all/Expand all
9017 Update image link for FoG Willing images Resolved Actions
  taxeditor 43 Collapse all/Expand all
9055 Relabel "Type Designation" to "Type Information" Feedback Actions
9084 Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon Resolved Actions
8785 Move functionality of buttons to context menu of the character matrix Resolved Actions
9063 Detailsview for MediaSpecimen broken Closed Actions
9053 CCE when selecting Character Tree for descriptive dataset Closed Actions
9045 TextualTypeDesignation throws exception in referencing objects view Closed Actions
9033 Adapt TaxEditor to new TaxonNode.status Closed Actions
9029 Adapt character matrix to using dtos instead of whole cdm entities Closed Actions
9025 allow for creating a new schema in empty dbs via the remote login dialog Closed Actions
9022 Implement lifespan for Person Details View Closed Actions
8999 Verbatim date not persisted for books Closed Actions
8990 Implement flowering periods (temporal facts) in TaxEditor Closed Actions
8988 Add link button to DOI field for references Closed Actions
8969 Multiple deduplications are not executed Closed Actions
8963 Selection dialogues should be modal Closed Actions
8961 Using the selection dialogue for nomenclatural references removes the recently used list Closed Actions
8959 Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon Closed Actions
8958 Add publication year, inReference (journal), and URI to reference bulk editor Closed Actions
8931 Taxeditor supports https Closed Actions
8903 Remember expansion state in factual data view Closed Actions
8857 NonUniqueObjectException when creating new taxon Closed Actions
8849 NPE in synonym DetailsViewer for synonyms without accepted taxon Closed Actions
8662 "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected Closed Actions
7774 Show description source for description elements Closed Actions
7189 Taxeditor connect dialog high-dpi suport Closed Actions
9070 Adapt preference page to feature.isAvailableFor... Resolved Actions
8901 Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself Resolved Actions
8754 DescriptionElements are not deleted with the Descriptive Data Set Resolved Actions
9066 Make visiblity of Specimen List Editor menu configurable Closed Actions
9060 NPE in termsearch Closed Actions
9059 Cancel taxon save does not clean the (factual data) cache Closed Actions
9052 NPE in name details view for incomplete name relationships Closed Actions
9038 Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues Closed Actions
9032 Implement Feature.availableFor in TaxEditor Closed Actions
9016 Adding specimen without field unit fails Closed Actions
9013 Problems in TaxonNode Dialog Closed Actions
8962 Handle widget is disposed after closing Supplemental Data View Closed Actions
8957 Rename "unexpected error" to "unhandled error" Closed Actions
8954 Details and Supplemental Data View do not save the expansion state of sections again Closed Actions
8783 Massive Heap consumption in server instance opening the Description-Matrix editor Closed Actions
8753 EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets Closed Actions
8806 Multiple representations problem on saving Desriptive Data Set Worksforme Actions
8752 Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset Worksforme Actions

CDM Platform 5.14 (released April 8th, 2020)

Issues: 28

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Portal
    • Structured descriptive data is shown on specimen page as continous text
    • Bugfix for the new universal media viewer
    • Bugfix for some descriptive data pages for taxon descriptions
  • - Import/Export
    • Handling of descriptions improved for ABCD import
    • Bug fix for CDM lite export of textual type designation missing a language
  • - TaxEditor
    • Set as basionym available also for accepted taxa
    • Distribution details view: configurable to show also abbreviation for selected named areas
    • Performance improved for preference dependend descriptive data matrix editing
    • Cloned descriptions show according icon
    • User/roles/rights: * ROLE_USER_MANAGER is allowed to change passwords * unnecessary "expired" flags removed from User UI * isAdmin valid for all users having ROLE_ADMIN
    • DNA Sample view allows editing of determinations
    • Export dialogue remembers last selected folder
    • Bug fixes:
      • Handling of preferences for term lists fixed
      • ConcurrentModificationException occurring at different places fixed
      • Incorrect handling of "show descriptions only for field units" fixed
      • Missing "id in vocabulary" in term labels fixed
      • Freetext filter for name relationship type selection in name relationship dialogue fixed
      • Exception caused by missing "number of rows in status dropdown" fixed
      • Exception when opening orphaned names in name bulk editor from search result fixed

# Subject Status
  cdm-dataportal 2 Collapse all/Expand all
8914 jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal Closed Actions
8895 Specimen page: show specimen description as continuous text Closed Actions
  cdm-vaadin 1 Collapse all/Expand all
8834 use TaxonNodeDto instead of UuidAndTitleCache Closed Actions
  cdmadapter 1 Collapse all/Expand all
8905 Description Handling in ABCD import Closed Actions
  cdmlib 4 Collapse all/Expand all
8907 replace UuidAndTitleCacheTaxonComparator by type save implementation Resolved Actions
8942 Exception when try to get text of TextualTypeDesignation with language which is not available Closed Actions
8428 NPE in ClassificationServiceImpl.loadTreeBranchToTaxon() Closed Actions
8815 Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8911 LazyInitializationException (LIE) in portal/description/{uuid} Closed Actions
8899 NullPointerException (NPE) in ManifestController Closed Actions
  taxeditor 18 Collapse all/Expand all
8943 Term Preferences are not correctly handled in combo boxes Closed Actions
8927 Fix isAdmin() method in LoginManager Closed Actions
8917 NPE when opening Acacia in Name bulk editor (from search) Closed Actions
8906 Refactor DNA Sample details view Closed Actions
7981 Add configuration UI for matrix description aggregation Closed Actions
8238 Allow interoperability between term trees Feedback Actions
8940 The export wizard does not remember last selected folder Closed Actions
8939 Exception when opening Distribution Editor because of missing Preference Closed Actions
8938 ProposalProvider in NameRelationshiptype combo does not work as expected Closed Actions
8926 Remove 'expired' flags in users details Closed Actions
8925 Users with ROLE_USER_MANAGER must be able to change any user password Closed Actions
8919 Shorten label for "Reference Detail" Closed Actions
8918 Add "set as basionym" to accepted taxon Closed Actions
8913 InInVoc not showing up anymore in TermEditor Closed Actions
8910 Correct handling of preference for determinations Closed Actions
8904 Show "cloned" icon in factual data view Closed Actions
8552 Avoid DB call for matrix state DB preferences Closed Actions
8725 Add abbreviation to namedArea text field in distribution details view Feedback Actions

CDM Platform 5.13 (released March 23th, 2020)

Issues: 47

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Portal
    • A new image viewer for the dataportal is now available. The new image viewer uses the iiif conform Universalviewer.
    • Several bugfixes regarding security and display of structured descriptions etc...
  • - Import/Export
    • DarwinCoreArchive: Categorical and quantitative data added to export
  • - CDM Library
    • Caching of in-references for nomenclatural references: only author's family name (without initials) is used now if available
    • Some improvements to the rights&roles management for editing of references
    • Bugfixes:
      • Names without ranks not found in taxon searches
      • Find best matching (in terms of size) image representation fixed/improved
      • some further bugfixes
  • - TaxEditor
    • Fix for failing connections (this might be the reason for many unclear errors that occurred in the past)
    • MacOS X version fixed (TaxEditor available for MacOS X again)
    • Search in bulk editors now also works on abbreviated title(caches)
    • Some improvements to the distribution editor
    • Some improvements to preference pages
    • Freetext search for all dropdown boxes available now
    • Search result view moved to the bottom of taxon navigator view (as default)
    • Taxon navigator allows open-in for multi-selection for name editor and distribution editor
    • Suggested file name for DwC-A export improved
    • Move-to functionality improved in term editor and term tree editor
    • Bugfixes:
      • Names without ranks not found in search
      • NameInSource only added after moving factual data if requested by the user
      • Measurment units added to quantitative data in descriptive data matrix editor
      • Automatically refresh available-specimen list for descriptive data matrix if descriptive dataset changes
      • Name features not visible in taxon factual data view anymore, but only in name factual data view
      • Inheriting sec-reference for root taxa from classification reference works again
      • Selection list for entering states for categorical data is sorted now
      • Deleting specimen descriptions possible now
      • Fix for deleting name types
  • - Web editor (Phycobank registration UI)
    • Bug fix in reference editor

# Subject Status
  cdm-dataportal 7 Collapse all/Expand all
8945 support statistical value type ExactValue (29736701-58c4-48b3-a9d7-41c74140cac7) Resolved Actions
8845 external links: GGBN not shoing up in admin section Closed Actions
8830 add missing spaces to statistical value representations Closed Actions
8828 statistical values must not show empty brackets Closed Actions
8328 Unpublished record visible in Portal if related name is published Closed Actions
7766 Remaining issues for using relationship DTO webservice in portal Closed Actions
5083 Alternative image viewer for dataportal Closed Actions
  cdm-vaadin 1 Collapse all/Expand all
8548 ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis) Closed Actions
  cdmadapter 1 Collapse all/Expand all
8891 Add categorical and quantiative data to DwC-A Closed Actions
  cdmlib 9 Collapse all/Expand all
8892 Taxon search does not work for names without rank Closed Actions
8881 Use pure last names (without initials) for in-references of taxon names Closed Actions
8868 Bump Jackson dependencies to >= 2.9.10.1 Closed Actions
8836 add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERSONBASE.[UPDATE,DELETE]) Closed Actions
8829 NullPointerException (NPE) in TaxonNodeService Closed Actions
8782 Delete a description included in a CdmSource should not be possible Closed Actions
6970 MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations over full sized Closed Actions
8839 Role misses toString method Closed Actions
5022 Check for dependencies from codehaus.org Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
8867 media list services as iiif manifest service Closed Actions
8866 LazyInitializationException (LIE) in portal/taxon/{uuid} Closed Actions
8427 LazyInitializationException in NameController.doGetTaggedFullTitle() Closed Actions
  taxeditor 26 Collapse all/Expand all
8848 Search fails with low data rate network (64kbit/s) network connection due to lost authentication Feedback Actions
8842 CdmServiceRequestExecutor is not stateleass and neither thread save nor access synchronized Resolved Actions
8812 Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...) Resolved Actions
8897 [Mac] Jre Taxeditor fails to start in MacOS X Closed Actions
8890 Allow multiselection for open_in menu Closed Actions
8873 eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and deletes the eu.etaxonomy.taxeditor/target/repository/plugins/org.eclipse.*.jar files Closed Actions
8847 Name in Source is added always when moving description from one taxon to another Closed Actions
8791 Measurement units are not assigned to quantitative data in matrix Closed Actions
8624 Add abbrev title cache to search in bulk editor Closed Actions
8047 Remaining issues in TaxDistributionEditor Closed Actions
6036 Problems with deleting type names Closed Actions
8562 Remaining issues for preference pages Feedback Actions
8832 Choosing the area for distribution in details view clears the selected status Resolved Actions
8879 strange file name for export file Closed Actions
8862 move search result to the bottom of the navigator part Closed Actions
8861 Sorted feature states Closed Actions
8860 Sec reference not inherited from classification anymore Closed Actions
8844 distinguish SocketTimeoutException from ConnectException Closed Actions
8825 Name features are shown in menu of factual data view of taxa when no preferences defined Closed Actions
8733 Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor Closed Actions
8721 Use webservice to get all biocase provider listed by gbif Closed Actions
8688 Make OriginalSourceBase.cdmSource visible in TaxEditor Closed Actions
8749 Add proposalProvider to AbstractComboElement Closed Actions
8531 factual data and media view always opened when opening taxon Closed Actions
8784 Deleting a specimen description not possible Closed Actions
8044 Add "Move to..." menu to term editor Closed Actions

CDM Platform 5.12 (released Jan 20th, 2020)

Issues: 67

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • Added "per mm²" to measurement units
    • Allow linking to CDM taxa as information source (currently only available for algorithms, not (yet) for editing in TaxEditor)
  • - Data Portal
    • Structured Descriptions
      • Show structure descriptions in general page as pseudo feature block (position configurable)
      • Implement explicit page for descriptions, using dataset character/feature tree (or general feature tree) for ordering
      • Order states by frequency
      • Improve display of average values (and other statistical vlaues) and single values
      • Support for linking to other CDM records as information source (for aggregated desciptions)
    • Show type designations for synonyms
    • Improved handling for URLs linking to not existing/deleted records (e.g. deleted polytomous keys)
    • User defined feature trees show the title, not only the uuid
  • - Import/Export
    • CDM light:
      • Typification column added to name and homotypical group files
      • Handling of name identifiers fixed
  • - CDM Library
    • Algorithms for descriptive data aggregation (distributions/structured descriptive data) fixed/improved
    • Polynomous key generation algorithm improved
    • Fix bug for deleting a taxon used in 2 different classifications
    • Fix repair term tree sortindex
    • Allow distribution aggregation to run on taxonomic subtrees
  • - Documentation
  • - TaxEditor
    • Documentation: see above
    • Editing of structured descriptive data now available as standard feature (was experimental before) * Character editor * Term search * Matrix editor * GFBio and ontology imports * Support for "allow duplicates" for term collections * Note: however there are still issues especially with the Character editor which hopefully will be fixed in the next version (we recommend to contact the EDIT team before using this feature)
    • Distribution aggregation available in taxon navigator
    • Added freetext filter to combo boxes
    • Links to other CDM records as information sources visible (but not editable)
    • "Move to ..." added to term editor
    • Improved handling for different term tree types (ordered, flat, distinct, ...)
    • Specimen import: list of existing BioCase endpoints available as dropdown
    • Fix multiple bugs related to BioCase specimen import
    • Fix collapsing tree bug when moving taxa in taxon navigator
    • Fix bug that reference search dialog does not open under certain conditions
    • For FeatureTree title should display representation of title not the titleCache

# Subject Status
  cdm 5 Collapse all/Expand all
8803 Add "per mm²" to measurement units Closed Actions
8468 Remove old InapplicableIf tables Closed Actions
8738 CdmLink.startPos and .endPos should allow Null Closed Actions
8724 Allow OriginalSource to link to Taxon Closed Actions
8702 Remove Not null constraint for uuid in AUD tables Closed Actions
  cdm-dataportal 19 Collapse all/Expand all
8786 Display of mean value with min max Resolved Actions
8771 display of average value with precision so that it differs from min and max by one digit Resolved Actions
8765 defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description" Resolved Actions
8781 Descriptions (aggregated): futher improvements Closed Actions
8779 Description page: use render_taxon_or_name() for creating the page and description title and taxon links Closed Actions
8758 Aggregated Descriptions: order states by frequency Closed Actions
8745 Type designations of synonyms missing on specimen page Closed Actions
8739 remaining issues for description detail page Closed Actions
8719 installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null Closed Actions
8718 polytomousKey page: better handling of invalid uuids Closed Actions
8686 Support CdmLink sources in bibliography Closed Actions
8798 description page: Show character hierarchy Resolved Actions
8787 Improve layout for ExactValue on Description Pages Resolved Actions
8759 Description aggregation : suppress state present when more details are available Resolved Actions
8714 description page: Show multiple datasets per description as list of links Resolved Actions
8807 description page: Adapt table header to the nature of description elements Closed Actions
8766 Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE] Closed Actions
8657 Order description element in portal according to CharacterTree Closed Actions
8595 Create description detail page Closed Actions
  cdmadapter 3 Collapse all/Expand all
8808 Cdm-Light Export fix name identifier export Closed Actions
8299 add typification column to scientific name and homotypical group in cdm light Closed Actions
8809 CdmLight Export area without level results in NPE Closed Actions
  cdmlib 13 Collapse all/Expand all
8788 Cloned descriptions do not show up in dataportal anymore Feedback Actions
8737 delete taxon included in two classifications deletes taxonname Closed Actions
8684 ITaxonService.findTaxaByName misses initStrategy Parameter Closed Actions
8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache Closed Actions
8670 Unwanted distribution aggregation/display on 2 levels Closed Actions
8472 Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types Closed Actions
8467 Save a "snapshot" of the SpecimenDescriptions used for aggregation Closed Actions
6629 TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels Closed Actions
4134 Transmissionengine Distribution seems to miss distributions for higher Taxa Closed Actions
8780 Repair sortindex does not work on TermTree index Closed Actions
8679 Further unify description aggregation methods Closed Actions
8713 Improve structured descriptive data aggregation Closed Actions
5176 TransmissionEngineDistribution can run on selected taxa Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8770 NameControllers responds with all entities when name uuid is not found Closed Actions
  taxeditor 26 Collapse all/Expand all
8810 In taxeditor parts without permissions should be disabled Closed Actions
8805 In distribution editor synoms should be available as concatenated String Closed Actions
8797 Navigator tree collapse after moving taxon node Closed Actions
8731 BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results Closed Actions
8677 Add distribution aggregation to set subtree menu Closed Actions
8801 Deselected menu items are not reactivated in navigator Closed Actions
8800 If supplemental data view shows reference it is not possible to select another reference Closed Actions
8757 ArrayIndexOutOfBoundsException in term combo Closed Actions
8755 Show all structure/property trees in CharacterEditor Closed Actions
8748 Supported state vocabularies should be ordered Closed Actions
8744 LazyInitializationException (LIE) saving the Character Editor Closed Actions
8736 LazyInitializationException (LIE) during adding Specimens to Matrix Editor Closed Actions
8706 taxeditor error report with timestamps Closed Actions
8703 Move TermSearch and Specimen(Import)Search to editor area of taxeditor Closed Actions
8694 Specimen online import - Specimen Search: import button layout problem on linux KDE Closed Actions
8665 Rename "New" to "New Tree" in Term Tree editors Closed Actions
8661 "New DataSet" should ask for label and then open the dataset Closed Actions
8645 rename menu item General > Import > "OWL Import" to "Term Tree OWL Import" Closed Actions
8511 The structure path in the character details view should have a line break Closed Actions
8477 Implement support for TermCollection.allowDuplicates in TaxEditor Closed Actions
8474 Make TermCollection.orderRelevant usable for TermTrees Closed Actions
8313 Multiple categorical data get deleted when clicked on in Character Matrix Closed Actions
8242 Implement filtered combo boxes for state selection in CharacterMatrix Closed Actions
8732 Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor Duplicate Actions
8656 [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix? Closed Actions
8716 Configure taxeditor to run with GTK2 in linux Closed Actions

CDM Platform 5.11 (released Nov 15th, 2019)

Issues: 39

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Model
    • Added count parameter for statics during data aggregation of categorical (structured descriptive) data
    • Added ORCID identifier to persons
    • Added CDM source links (sources may link to other information in the same CDM instance)
  • - Data Portal
    • Fixed polytomous key display for key parts linked from multiple places
    • Fix label formatting for specimen with missing collection identifier in specimen tables
    • Fixing problem with names having multiple nomenclatural status
  • - Import/Export
    • ABCD:
      • Fix collector and field number handling for derived units missing this data (but available in field unit record)
  • - CDM Library
    • Better parsing for infrageneric autonyms with authors
    • Imporved distribution and descriptive data aggregation
  • - CDM Server
    • Fix memory leaks
  • - TaxEditor
    • Taxon search: new filter to search only for published taxa
    • Terms:
      • Tree editor for Named Areas, Ranks and Distribution Status available (to define user defined term collections and orders, including cross-vocabulary collections) - usage of such collections will be implemented in future releases
    • Taxon/Name details view
      • Nomenclatural code edition editable for rule considered (nomenclatural status and name relationships)
      • Rule considered and nomenclatural code editon visibility configurable (serverside and local)
      • Minor changes in ordering of misapplied name details view
    • Person details view
      • ORCID editable
    • Taxon navigator:
      • Taxon node doubtful flag editable via context menu
      • Rename view to "Taxon Navigator" (regression in one of the last releases)
      • Refresh problem after editing classfication label or adding child taxon to classification
      • Rename open-in for Taxon Node (Wizard) to ... Dialogue
      • Reorder and rename import menu (items)
    • Import/Export:
      • Multiple fixes for file based ABCD import
      • Fix for DwC-A export
    • Factual Data View
      • Visibility of "modifier" and "modifying text" is configurable now
    • Distribution Editor
      • Default source also used when creating an additional source for an existing source
    • User administration
      • Better error handling for user and group names with not allowed characters

# Subject Status
  cdm 4 Collapse all/Expand all
8466 Delete FeatureTree tables Closed Actions
8673 Allow OriginalSource to link to other CDM objects Closed Actions
8628 Add ORCID as person identifier Closed Actions
8625 Add count parameter to StateData Closed Actions
  cdm-dataportal 3 Collapse all/Expand all
8610 tagged_text_extract_nomstatus() fails handling more than one status Closed Actions
8622 Missing specimen Identifier leads to empty brackets in portal Closed Actions
8596 Add a list of descriptions to the taxon page Closed Actions
  cdmadapter 2 Collapse all/Expand all
8533 missing collector and fieldnumber in abcd import Closed Actions
8632 ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration Closed Actions
  cdmlib 3 Collapse all/Expand all
8676 TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship Closed Actions
8651 Unify description aggregation methods (distribution and structured descriptive data) Closed Actions
8253 Authors for genus autonyms Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8570 PolytomousKeyNode.otherNode missing in REST service response Closed Actions
  cdmserver 2 Collapse all/Expand all
8674 configure cdm-server docker image to run with jemalloc Closed Actions
5048 cdm-server causes unusual high native memory consumption for jvm Closed Actions
  taxeditor 24 Collapse all/Expand all
8685 Exception when calling DwC-A Export Closed Actions
8653 NullPointerException (NPE) when focusing Taxon Name Editor Closed Actions
7457 E+M: Allow filtering for only published in search Closed Actions
7143 Finish not enabled when unprotecting titleCache in new Person dialog Closed Actions
8667 Make Person.orcid editable in TaxEditor Closed Actions
8664 SQLGrammarException when opening Specimen selection Closed Actions
8648 Simplify name details view configuration Closed Actions
8642 Add tree editor for rank, NamedArea and PresenceAbsence Closed Actions
8634 NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import Closed Actions
8631 ABCD import fails to put new taxa into the classification, create mediaspecimens, etc Closed Actions
8630 ClassCastException when ABCD import has finished Closed Actions
8613 For distribution editor default reference should be used also when new source is created Closed Actions
8609 Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard Closed Actions
8584 Appended phrase should be shown on top level for misapplied names Closed Actions
8582 Taxon Navigator: Classification label not refreshed & new taxa not visible Closed Actions
8581 Naming inconsitency: Taxon Navigator or Taxonomic Tree? Closed Actions
8572 Rule considered configurable Closed Actions
8568 improve performance for term and vocabulary preference pages Closed Actions
8470 Handle username constraints in user and group editing Closed Actions
8410 Add nomenclatural code edition to ruleConsidered in TaxEditor Closed Actions
8652 disentangle confusion when connecting to development cdm instance fails Closed Actions
8486 Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu Closed Actions
8226 make modifiers for description elements configurable Closed Actions
7019 sort import menu Closed Actions

CDM Platform 5.10 (released Sep 23rd, 2019)

Issues: 30

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Portal
    • Taxon section in name page can be suppressed via settings.
    • Bug fix of a regression related to the display of DOIs and publication reference links.
  • - Import/Export
    • CDM light export:
      • type designation export differs between textual and specimen type designation
    • Biocase search:
      • add possibility to search for Higher Taxon
  • - CDM Library
    • Bugfixes and code maintenance
      • Providing the default user role USER_MANAGER to all databases.
  • - TaxEditor
    • Bugfix for swap taxon and synonym
    • Further improvements to preference handling
    • Search dialogue for distribution areas works with abbreviations
    • Old taxeditor documentation made available.
  • - Web editor (Phycobank registration UI)
    • Name relations and nomencaltural status now offering fields to mention the nomenclatural code edition.
    • Layout and user experience (UX) issues in the UI have been solved (#8014, #8342, #8377).
    • Fixing important bug to prevent data loss and corruption (#8462, #8527)

# Subject Status
  cdm-dataportal 3 Collapse all/Expand all
8594 registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern Closed Actions
8565 external links and dois no longer showing up Closed Actions
8504 Name page: allow hiding the Taxon section via settings Closed Actions
  cdm-vaadin 8 Collapse all/Expand all
8527 TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time Closed Actions
8462 NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext() Closed Actions
8409 add nomenclatural code select to NameRelationField Closed Actions
8408 add nomenclatural code select to NomenclaturalStatusRow Closed Actions
8377 TypeDesignationsEditors: Delete must not be allowe before the workingset is saved Closed Actions
8376 RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered Closed Actions
8342 shift field Field number Closed Actions
8014 Label wording im UI Name Editor Closed Actions
  cdmlib 6 Collapse all/Expand all
8519 ROLE_USER_MANAGER missing in FirstDataInserter Closed Actions
8517 SpecimenOrObservation: data from protected titleCache missig in portal pages Closed Actions
8513 CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator() Closed Actions
8505 ConfigFileUtil: turn all spring bean methods into not statical methods. Closed Actions
8456 FieldUnitDTO: remove newInstanceMethod Closed Actions
8425 FieldUnitDTO: remove taxonRelatedDerivedUnits Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8538 add text_l10n for TextualTypeDesignation.text to web service respones Closed Actions
  taxeditor 12 Collapse all/Expand all
8123 Make available features a DB preference Closed Actions
8092 set default for term and vocabulary selection preferences in selection wizard Closed Actions
8034 Recently used references shows all references Closed Actions
7321 multi-language textfields should not show empty text when there is text Closed Actions
8489 Further issues for DB preferences Resolved Actions
8564 Link to PlatformDocumentation wiki page Closed Actions
8539 Add IndividualsAssociation when adding specimens to the character matrix Closed Actions
8488 Characters can not be added to feature trees Closed Actions
8386 Disable admin menu when not logged into a DB Closed Actions
8382 Local Supplemental Data Source Preferences should reflect the state of admin preferences Closed Actions
8335 Store character matrix table state as DB preference Closed Actions
8350 Search dialog for named areas should work with abbreviations Closed Actions

CDM Platform 5.9 (released Aug 29th, 2019)

Issues: 52

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • Term structure improved to allow all types of relations between terms and to allow vocabulary independent term collections/graphs (partly implemented in TaxEditor)
    • Add state vocabulary for presence/absence of a biological structure
    • Improve structure for inapplicableIf handling in character trees used for descriptive data matrices/datasets and for indentification keys
    • Improve authority handling in data model (preparation only)
    • Allow certain patterns only as usernames (Latin letters, numbers, '_', '.' are allowed)
    • Doubtful (placement) flag for taxon nodes
    • List of nomenclatural code editions (e.g. Melbourne Code) additional to rule considered in nomenclatural status, name relationship and hybrid relationship
    • Fields added to allow externally managed terms and vocabularies (not yet in TaxEditor)
    • Fields for textual/verbatim type designation information
    • Possibility to add fixed markers/types to a description (e.g. to mark a description as a computed/aggregated description which should not be editable)
  • - Data Portal
    • Adapted to term structure changes in the data model.
    • Improved ordering of type designations in the name and taxon pages.
    • Harmonization and improvement of the specimen display in various parts of the portal, including better intra portal linking.
    • Performance improvement regarding to type designations.
    • Auto-zooming of maps has been fixed for different map projections.
    • Improved layout of the registration page to clearly show the nomenclatural act.
    • Classification tree horizontally automatically scrolls to active entry.
  • - Import/Export
    • CDM light export:
      • add textual/verbatim type designations
      • some minor adaptations
  • - CDM Library
    • Fix and improve polytomous key generation (to be used from descriptive data set, experimental feature)
    • Multiple improvements and bug fixes to web services
  • - TaxEditor
    • Add textual/verbatim type designations to details view
    • Use feature states for applicability of term nodes
    • Improvement and harmonization of serverside and local preferences
    • Update name in source data when changing an accepted taxon into a synonym (configurable)
    • Allow setPublish for subtree to include misapplied names, pro parte synonyms and exclude hybrids
    • Seperate term tree editor for each term type available
    • Warning if misapplied names or pro parte synonyms are used/linked from more then 1 other taxon.
    • Bugs.
      • fixed term order of term trees

# Subject Status
  cdm 12 Collapse all/Expand all
8454 Only allow certain patterns as username and groupname Closed Actions
8442 Add fields to handle external terms to DefinedTermBase or TermBase Closed Actions
8441 Add FeatureState class Closed Actions
8429 Rename DeterminationEvent_Reference.setOfReferences_id Closed Actions
8398 Add nomenclatural code edition to ruleConsidered Closed Actions
8281 Doubtful flag for TaxonNode Closed Actions
8180 Add property term "Presence/Absence" to CDM default terms Closed Actions
7957 Add types for taxon description (as EnumSet) Closed Actions
7470 Verbatim type designation information Closed Actions
7099 Make CdmAuthority a persistable class Closed Actions
4884 Update Reference_AUD.refType to allow NULL Closed Actions
3972 Strictly validate username to not null and not empty Closed Actions
  cdm-dataportal 11 Collapse all/Expand all
8502 taxa with doubtful flag lack proper formatting Closed Actions
8495 classification tree horizontally scrolls to active entrty Closed Actions
8449 improve layout of registration page to clearly show the nomencaltural act Closed Actions
8448 Maps settings > Bounding box inconsistent Closed Actions
8440 specimen accession numbers link to specimen page Closed Actions
8430 maps zoom to wrong bbox with some layers Closed Actions
8418 specimens and occurrence links must not have a target=_blank attribute Closed Actions
8415 use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval Closed Actions
8406 specimens and occurrence code cleaning and harmonization Closed Actions
8402 ordering typedesignations in name and taxon page Closed Actions
8166 Adapt dataportal to term structure changes Closed Actions
  cdmlib 8 Collapse all/Expand all
8437 ITermTreeService provides a list method which supports filtering by TermTree.termType, Resolved Actions
8482 java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151) Closed Actions
8422 Make PolytomousKeyGenerator work (correctly) Closed Actions
7450 Allow setPublish for subtree to include misapplied names and pro parte synonyms Closed Actions
3472 Update name in source data when changing an accepted taxon into a synonym Closed Actions
8426 IndexOutOfBoundsException during serialization of RegistrationWorkingSet Closed Actions
8404 Add update step list within updaters Closed Actions
8446 Allow setPublish for subtree to filter for hybrids Closed Actions
  cdmlib-remote 5 Collapse all/Expand all
8434 Change FeatureTree contollers to TermTree controllers Closed Actions
8414 occurrence controller code cleaning and harmonization Closed Actions
8395 NullPointerException (NPE) in NameCatalogueController Closed Actions
8390 implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup Closed Actions
8436 featureTree/* services should filter the termTrees by the TermType Feature Closed Actions
  taxeditor 16 Collapse all/Expand all
8389 Correct handling of default values with allowOverride=false Resolved Actions
8532 common name language selection is not selected Closed Actions
8526 Swap synonym with accepted taxon does not work Closed Actions
8385 Open issues in DB preferences Closed Actions
8334 Move sources for type designations to details view Closed Actions
8282 Implement placementDoubtful in TaxEditor Closed Actions
8135 Implement verbatim type information in TaxEditor Closed Actions
8600 Taxon Navigator: tree no longer scrolls while draging a taxon node Closed Actions
8485 Add column groups to character matrix Closed Actions
8480 Use DescriptionTypes for matrix descriptions Closed Actions
8475 Adapt applicable state detail view elements to FeatureState Closed Actions
8465 Term nodes order in term trees is ignored in term tree editor Closed Actions
8447 Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids Closed Actions
8444 Show warning if misapplied names / pro parte synonyms are used more then once Closed Actions
8235 Create separate menu for term tree editors for each term tree type Closed Actions
7597 Aggregate and persist descriptions on taxon level Closed Actions

CDM Platform 5.8 (released on Jul 19th, 2019)

Issues: 65

Downloads: Ask the edit team for backups of this version

What's new?

  • - Model
    • cm added as measurment unit
  • - Data Portal
    • Improvements to the media page related to source references and the media title
    • Name page shows more information: name relations, type designation with specimen map, related taxa, nomenclatural acts (registrations)
      • The automatic redirect behavior to the taxon page is now configurable
    • Registration search:
      • Support for filtering by references
      • Improved search by type designation status and name
    • Registration page:
      • Subheadline to show the type of the nomenclatural event
    • General layout improvements
      • Links to reference pages as unobtrusive icon link
    • Maps:
    • User interface to search the Unified Taxonomic Information Service (UTIS)
    • Bugfixes related to
      • Name relations
      • Nomenclatural status
      • Type designations
  • - CDM Server
    • improved error detection when failing to start
  • - TaxEditor
    • improved deduplication for references in name editor (hotfix 5.7.3)
    • handling of preferences improved
      • consistent model to always allow default and specific values and to handle override more intuitive
      • area specific status list preferences for distribution data
      • status list serverside preferences for distribution data handled in details view
      • ranks as serverside preferences
      • nomenclatural status as serverside preferences
      • visibility of fields Source.idInSource and Source.IdNamespace as preferences
    • CDMlight export
      • includes excluded flag and excluded notes
      • sortindex for taxa added
      • improvements in ABCD import
    • Terms allow adding media in term editor
    • Media:
      • media loaded asynchronously to improve performance (has open issues)
    • Bugs
      • exception/freezing when opening name in source search dialogue (hotfix 5.7.3)
      • recognize again the previous state (opened sections) of details view and supplemental data view (hotfix 5.7.3)
      • refresh in name bulk editor after search (hotfix 5.7.3)
  • - Web editor (Phycobank registration UI)
    • Registration list view with reference filter
    • Curators and admins can edit arbitrary Annotations (Notes)
    • Bugfixes related to
      • user permissions
      • ...

# Subject Status
  cdm 1 Collapse all/Expand all
8286 Add cm as unit term to CDM Closed Actions
  cdm-dataportal 25 Collapse all/Expand all
8388 UTIS search block Closed Actions
8370 feature blocks created by compose_description_element_individuals_association() are broken Closed Actions
8368 problems in compose_cdm_specimen_or_observation_tree_entry() Closed Actions
8366 Same typedesignation display for registration page as in name page Closed Actions
8352 name page: show nomenclatorical acts Closed Actions
8351 name page: show type designations with map Closed Actions
8347 point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc. Closed Actions
8321 Namepage shows wrong taxa as related to the name Closed Actions
8320 Links to reference page as appendend icon instead of having the whole citation as link Closed Actions
8318 TaxonName processing for taggedFullTitle Closed Actions
8245 Improve representation of DescriptionElementBase.timeperiod Closed Actions
8016 Registration page: subheadline with event type Closed Actions
7966 Registration search simplify type select options Closed Actions
7620 RegistrationSearch implemented with Reference filter Closed Actions
6380 typedesignations missing in homotypic group Closed Actions
6316 display source references of media objects in media page Closed Actions
5857 show nomenclatural status for for representations of TaxonName Closed Actions
8304 Name page redirects to according taxon depending on query parameter Feedback Actions
8306 Registration page links to registered taxon name Closed Actions
8108 Name page shows complete name information (I) Closed Actions
7975 Implement a block to display name relations Closed Actions
4177 display of name relationships in synonymy broken Closed Actions
8280 polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder Closed Actions
6709 Do not show UUID on media page Closed Actions
5855 potential improvements in settings for name relationship types Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
8167 Permission denied for Submitter when adding section to newly created journal Resolved Actions
8346 Curators and admins can edit arbitrary Annotations (Notes) Closed Actions
8345 RegistrationListView: filter option for publication Closed Actions
8278 LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator Closed Actions
8284 starting a registration for an existing name causes the name editor to pop up in read only mode Closed Actions
8279 ClassCastException in CdmUserHelper.user() Closed Actions
  cdmadapter 5 Collapse all/Expand all
8273 abcd import: check for all specimen for DNA in DNABank Feedback Actions
8264 excluded and excluded notes in cdmlight export Closed Actions
6627 Remaining cdm light issues Closed Actions
8322 add sortindex to cdm light export Resolved Actions
8344 Cdm light export: add dummy line in simple facts table Closed Actions
  cdmlib 12 Collapse all/Expand all
7433 new service method to get specimen by genetic AccessionNumber Resolved Actions
8369 SpecimenTypeDesignationDTO can not be serialized to JSON Closed Actions
8365 DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers Closed Actions
8354 taxonomic registration search by name finds also typifications for this name Closed Actions
8330 RegistrationDao search method Closed Actions
8314 TaxonName provides the FullTitleCache as TaggedText Closed Actions
7902 Allow default values for PreferencePredicates Closed Actions
7829 Improve deduplication of parsed names and references Closed Actions
7296 externalize redmine api key Closed Actions
8287 RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed Closed Actions
8257 Remove factory methods for term node creation Closed Actions
8062 Make default preferences deletable serverside Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8319 NomenclaturalStatus webservice implemented Closed Actions
7621 registration search also covers typified names Closed Actions
  cdmserver 1 Collapse all/Expand all
5774 cdmserver misses to detect some errors in failed instances Closed Actions
  taxeditor 13 Collapse all/Expand all
8293 Distribution preferences for details view should be serverside preferences Feedback Actions
8256 Show all status preferences as table Feedback Actions
8088 Open taxon node wizard issues Feedback Actions
8045 Improve handling of default values and override in local preferences Feedback Actions
7920 Possibility to define area specific status selection Feedback Actions
8294 Make display of ID in source and ID Namespace configurable Closed Actions
8129 Load images asynchronously in media details view Closed Actions
8333 Show modifiers for states in Character Matrix Closed Actions
8332 Excel matrix exports only the visible rows Closed Actions
8283 Allow adding media to terms in taxeditor Closed Actions
8260 Details and Supplemental Data View do not save the expansion state of sections Closed Actions
8323 Make nom.status and rank lists a CdmPreference Feedback Actions
8058 Further issues for (local) preferences Feedback Actions

CDM Platform 5.7 (released on May 6th, 2019)

Issues: 21

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Portal
    • Bugfix for setting the feature tree for the general page
  • - TaxEditor
    • some urgent bugfixes for character matrix editing
    • possibility to define area specific distribution status for distribution editor (UI for setting this preference is still missing)
    • some bugfixes
  • - Web editor (Phycobank registration UI)
    • All comboboxes for references are making use of the ellypsed reference labels
    • The TaxonNamePopeditor now supports editing the nomenclatural status
    • Name type status filter in registration search simplified
    • and some bugfixes

# Subject Status
  cdm-vaadin 8 Collapse all/Expand all
8252 reference ellypsis must not be applied to all reference types Closed Actions
8250 ReferenceEditor: inReference must not be required for type book Closed Actions
8246 TaxonNamePopupEditor can not be canceled Closed Actions
8220 incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference Closed Actions
8215 User demand: sorting order in reference editor Closed Actions
8209 use ellypsed references for all reference comboboxes Resolved Actions
8193 TaxonNamePopupEditor: add select form element for Nomenclatural status Closed Actions
7965 Registration search simplify type select options Closed Actions
  cdmlib 2 Collapse all/Expand all
8189 Allow configuration of 'user.home' via the spring environment Closed Actions
7953 Book in BookSeries: incomplete titleCache misses series title Feedback Actions
  cdmlib-remote 1 Collapse all/Expand all
8251 LazyInitializationException (LIE) in featureTree webservice Closed Actions
  taxeditor 10 Collapse all/Expand all
8349 NPE in ParseHandler when parsing name without nomencl reference Closed Actions
8316 Endless loop when editing name in source of distribution Closed Actions
8315 Parsing existing references with inReferences changes the inReference Closed Actions
8267 common name preference saving does not work correctly Closed Actions
8266 local preference is not evaluated for distribution editor status Closed Actions
8265 Referencing objects view does not work for term editor Closed Actions
8263 Improve performance of term editor Resolved Actions
8258 Default Feature Tree contains name features and features Closed Actions
8241 Rename FeatureTreeEditor to TermTreeEditor Closed Actions
8229 reload of the bulkeditor does not work correctly Closed Actions

CDM Platform 5.6 (released on Apr 12th, 2019)

Issues: 67

Downloads: Ask the edit team for backups of this version

What's new?

  • Data Model
    • feature trees have been refactored to typified Term trees which support any type of terms
    • added term types to term vocabularies
    • added structure, property and regional modifier as new term types
  • - Data Portal
    • added time period for description elements in data portals
    • improve user profile settigs in cdm_dataportal
    • harmonize registrationId links and make testing easier
    • improve image gallery settings labeling
  • - Import/Export
    • name facts added to cdm light export
  • - TaxEditor
    • term editor
      • add "plural" to representations
      • new term editor for structures, properties, regional modifers
    • feature/term tree editor
      • feature trees became more generic and support all types of terms (not yet fully available in editor)
      • restrict editor according to typified term trees
    • name editor
      • creating duplicates of specimen type designations
    • update of open data after updating subtree operations (update publish flag and update sec reference)
    • user selection dialogs for group members filter out already added users
    • name facts now editable, when selecting name in details view and in name bulk editor
    • sources can be added to type designations
    • Bugs
      • changing of title cache of a factual data set was not possible
      • selection dialogs for teams or persons did not filter out institutes
      • insufficient rights lead to missing focus in name editor
      • fixed title cache issues for taxon descriptions
  • - Web editor (Phycobank registration UI)
    • User friendly message when accessing editors with unsufficient permissions (#8218)
    • Registry curator can unlock a published registration for minor changes (#8192)
    • Solving a major performance problem related to uninomial und specific epithet comboboxes (#8176)
    • Better lables for popup editors breadcrumbs (#7962)
    • ReferenceEditor: optional validation for completenes of Partial values in datePublished (#7968)
    • Create blocking relations for un-registered names which are to be used in nomenclatural acts (#8050)
    • TaxonNamePopEditor: name part field visibility not correct for all ranks (#7963)
    • ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL (#8149)
    • ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked (#8191)
    • Bugfixes:
      • Fixing enabled state of edit buttons in combobox widgets (#8217)
      • Solving multiple problems related to problems with hibernate session an transaction handling
      • Problem with inserting a section - inReference is "lost" (#8097)
      • Error saving name type designation editor due to problem in poupeditor context (#8099)

# Subject Status
  cdm 2 Collapse all/Expand all
8190 Default FeatureTree throws exception Closed Actions
8162 Move term related classes from model.common to model.term Closed Actions
  cdm-dataportal 5 Collapse all/Expand all
8106 improve image gallery settings labeling Closed Actions
8093 harmonize registrationId links and make tesing easier Closed Actions
5699 user profile settigs in cdm_dataportal module done wrong Closed Actions
3747 Check if time period is handled correctly for description elements in data portals Closed Actions
3616 Show DescriptionElementBase.timeperiod in Dataportals Closed Actions
  cdm-vaadin 23 Collapse all/Expand all
8218 Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions Closed Actions
8217 ToManyRelatedEntitiesComboboxSelect edit button not enabled Closed Actions
8214 WeaklyRelatedEntityCombobox is not validated Closed Actions
8213 MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart Closed Actions
8194 LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name Closed Actions
8192 The curator must be able to unlock a published registration for edition Closed Actions
8191 ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked Closed Actions
8188 Allow configuring hibernate properties via properties file Closed Actions
8184 SpecimenTypedesignationEditor: add new specimen broken Chrome browser Closed Actions
8176 WeaklyRelatedEntityCombobox is slow Closed Actions
8160 CdmBeanItemContainerFactory as readonly service bean Closed Actions
8158 cascade="all-delete-orphan" problem when .... Closed Actions
8149 ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL Closed Actions
8107 NPE when throwing PopupEditorException in AbstractPopupEditor Closed Actions
8099 Error saving name type designation editor due to problem in poupeditor context Closed Actions
8097 Problem with inserting a section - inReference is "lost" Closed Actions
8075 multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations Closed Actions
8065 HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table Closed Actions
8050 Create blocking registrations for un-registered names which are to be used in nomenclatural acts Closed Actions
7968 ReferenceEditor: optional validation for completenes of Partial values in datePublished Closed Actions
7963 TaxonNamePopEditor: name part field visibility not correct for all ranks Closed Actions
7962 PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels Closed Actions
7881 reference selection combobox broken after error in ... Closed Actions
  cdmadapter 1 Collapse all/Expand all
8175 add name facts to cdm light export Closed Actions
  cdmlib 6 Collapse all/Expand all
8171 javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed Closed Actions
8153 Adapt cdmlib to FeatureNode/FeatureTree model changes Closed Actions
8104 TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart Closed Actions
7896 NPE, NullPointerException in RelationshipTermBase Closed Actions
7106 avoid factory.openSession() in CdmRepository Closed Actions
615 remove suns repository Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8173 spring profile remoting enabled by default Closed Actions
8096 Implement CacheUpdater as long running task with correct progress monitoring Closed Actions
  taxeditor 28 Collapse all/Expand all
8234 Move description elements issues Closed Actions
8228 refresh of details for same object in different bulk editors does not work Closed Actions
8225 Deleting one of two type designations removes both Closed Actions
8223 Urgent TaxonNode wizard issues Resolved Actions
8222 Deleting a type designation from a name is directly persisted Closed Actions
8211 Trigger new search when clicking on identifier search Closed Actions
8200 Changing title(cache) for factual data set not possible Closed Actions
8197 Deleting Media from Image Gallery View does not make view dirty Closed Actions
8151 after creating a new synonym and pasting a name string the default string is not removed Closed Actions
8150 Allow editing the representation label of characters in details view Closed Actions
8148 Login Dialog cuts off information Closed Actions
8147 Add "plural" to representation detail element Closed Actions
8146 Adapt taxeditor UI to structure and property term type Closed Actions
8143 It is possible to open multiple instances of the login dialog Closed Actions
8136 Implement sources for type designations in TaxEditor Closed Actions
8124 Activate Name Facts in Taxeditor Closed Actions
8121 Allow selecting structural/property modifiers when creating a character Closed Actions
8115 NPE when moving factual data Closed Actions
8111 User selection dialog for groups does not filter out existing users Closed Actions
8011 Implement term search view Closed Actions
7923 Add context menu and drag'n'drop to CharacterEditor Closed Actions
7865 Remaining factual data view label issues Resolved Actions
7541 Insufficient rights lead to missing focus in name editor Closed Actions
7515 TypeDesignationStatusComparator to sort by vocabulary first and then by term order Resolved Actions
7428 Open issues for updating open data while subtree is updated Closed Actions
6413 [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name Closed Actions
4545 Implement TeamOrPersonBaseSelectionDialog Closed Actions
3836 Implement modifiers and modifying text for Description Elements in TaxEditor Closed Actions

CDM Platform 5.5 (released on Feb 14th, 2019)

Issues: 123

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • removed/added some attributes from certain attribute types (e.g. removed date published and authorship from journals and print series, added ISBN to Proceedings)
  • - CDM Server
    • Available as docker container
  • - Import/Export
    • taxon (tree)index added to CDMlight export
  • - Dataportal
    • improved registration page, now showing the complete nomenclatural act data and registration metadata
      • human feedback to users in case a registration is not public or does not exist
    • improved diplay of type designations
    • improved display of registrations in lists like in search results and reference page
    • reference page shows name relations
    • details page for field units improved
    • some bugs fixed
  • - TaxEditor
    • Distribution editor
      • use new table frame work (so called NAT tables), offering improved usabilty and functionality like filtering, column freezing etc
      • improved area selection dialog
      • bug fixes
    • Preferences
      • new menu structure for local preferences (not fully completed yet)
      • serverside preferences and local preferenced unsing same user interface pages
      • translation to German completed
      • improved handling of "(allow) override" functionality
      • improved handling of default values
      • (the last 2 will be further developed into 1 system with one of the next releases)
    • References
      • DOI available as attribute
      • warning for multiple usage of references also in details view (not only in editing dialog)
      • improved attribute selection for specific reference types (see data model section above)
    • Rights&Roles
      • Role "remoting" added, only users belonging to a group with role remoting are allowed to open data in TaxEditor
    • Term editor
      • performance improved
      • 2nd symbol for terms available
      • Bugs/exceptions when moving or adding terms fixed
    • Feature tree editor
      • drag&drop from (feature) term editor available
      • Right click menu added (replacement for buttons)
      • copy&paste added (for the rare case that a feature should be reused within the tree)
    • Name editor
      • invalid designations available similar to pro parte synonyms and misapplied names (formatting not yet correct)
    • Description/Character Editor (experimental, multiple improvements)
    • Taxon node wizard improved
    • Automated deduplication of references and authors works also for new taxon dialog (before it worked only in name editor)
    • Bugs
      • Improved (title)cache updating
      • Empty dialog for File -> New -> Reference -> Change reference type fixed
      • Some exceptions thrown in term editor fixed
      • sometimes invisible deduplication icons fixed in bulk editor
      • handling of deleting new+unsaved records fixed in bulk editor
  • - Web editor (Phycobank registration UI)
    • Reference editor
      • Reference editor: Label In proceedings in InProceedings missing
      • ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
      • ReferencePopupEditor: apply sensible reference type pre-set for in references
      • ReferenceEditor: filter inReferences by applicable reference type
      • ReferenceEditor misses institution, organization and school fields
    • TaxonNameEditor:
      • Entering data for name parts (genus, specific epithet) is now required
      • Exclude current name from name relationship comboboxes
      • orthographic name correction available
    • Registration start view:
      • Reference combobox to offer two search modes
      • Exclude irrelevant reference types from list of existing publications
    • Registration Workingset Editor
      • A couple of severe bugs fixed
      • realiably setting registration date when status is set to PUBLISHED
    • Registration search
      • Registration items in list view is using the wrong button icons for blocking regs and validation errors
    • SpecimenTypeDesignationEditor
      • Display of altitude fixed and also a related problem when saving
      • GeoLocationField uses OpenTopoMap
      • Collection date supports timespans
      • Improved user feedback
      • Geolocation
        • Suopport for reference systems
        • Map shows error radius
    • cdmlib-vaadin UI widgets
      • Reference combobox options with ellypsed reference titles
      • ToOneRelatedEntityCombobox validation fixed, layout problems solved
      • PopupEditors notify user on editor changes and allow the user choose from discard or save in a dialog
      • PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
    • Label improvements
    • Permission and security improvements
    • Performance improvements
    • Classification fragments are managed in a non cyclic directed graph, this mainly improves the search capabilities
      • Automatic management of the graph during editing of RegistrationStatusFieldInstantiator
    • Bugs fixed:
      • Massive memory consumption problem solved
      • Multiple representations problems fixed
      • LazyInitializationExceptions fixed
      • Fixing problems with possibly corrupted hiberante sessions
    • Complete removal of the rejected messaging prototype implementation

# Subject Status
  cdm 6 Collapse all/Expand all
8030 Cache updater service methods externalized and base class specific Closed Actions
7930 Remove DOI from journals, print series and person communications Closed Actions
7918 Revision of reference type specific properties Closed Actions
7915 Remove date published from journals and print series Closed Actions
7914 Add ISBN to IProceedings Closed Actions
7913 Remove authorship from IJournal and IPrintSeries Closed Actions
  cdm-dataportal 13 Collapse all/Expand all
8076 implement test for typified name for registration page Closed Actions
8074 Registration page has fatal error when registration identifier in url path is ivalid Closed Actions
8073 Registration page: show typified name for registrations covering typifications only Closed Actions
8056 WSOD in cdm_dataportal/search/results/taxon Closed Actions
8051 improve display of registration items lists Closed Actions
8048 Selenium test for Registration page Closed Actions
7977 Registration page layout improved Closed Actions
7974 Layout for Registration date Closed Actions
7947 registration page shows name relations Closed Actions
7927 Registration not found, Portal handling registrations in preparation Closed Actions
7907 Annotations in Reference page do not respect the annotation settings Closed Actions
7616 reference page: show name types Closed Actions
7564 remove Phycobank - Registration data - block and other outdated registration code Closed Actions
  cdm-vaadin 46 Collapse all/Expand all
8090 Reference editor: Label In proceedings in InProceedings missing Closed Actions
8072 Registration items in list view is using the wrong button icons for blocking regs and validation errors Closed Actions
8071 ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity Closed Actions
8070 ReferencePopupEditor: apply sensible reference type pre-set for in references Closed Actions
8069 RegistrationUI: remove all messaging related code and message indicators from all views Closed Actions
8064 NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() on saving new name for new registration with new genus Closed Actions
8063 multiple representations problem wirth collector being author of the registration citation Closed Actions
8059 NPE when adding existing but un-registered name to workingset Closed Actions
8039 NPE when creating new name in unsaved NameTypeDesignation for exising name in workingset which has no registration yet Closed Actions
8031 Cannot add existing name to blank workingset Closed Actions
8013 LazyInitializationException (LIE) in RegistrationDTO.makeBibliographicCitationStrings Closed Actions
7995 Registration.registrationDate not set when status is set PUBLISHED Closed Actions
7956 RegistrationWorkingsetEditor refresh problem after saving TaxonNameEditor Closed Actions
7951 Reference Combobox option titles can be too long causing the select box to extend too much Closed Actions
7950 ToOneRelatedEntityCombobox: add new button "jumpes" to the right when hovering the mouse over Closed Actions
7949 New Registration: Reference combobox to offer two search modes Closed Actions
7946 RegistrationStatusFieldInstantiator must set status value internally before adding the ValueChangedListener Closed Actions
7944 TaxonNamePopEditor: name part fields are required Closed Actions
7942 SpecimenTypeDesignationEditor: Explanation on why editor can not be saved without type designation Closed Actions
7937 TaxoNamePopupEditor: Exclude current name from name relationship comboboxes Closed Actions
7925 AbstractPopupEditor: exception handling in save method is incomplete Closed Actions
7919 GeoLocationField uses OpenTopoMap Closed Actions
7916 SpecimenTypeDesignationEditor: Map shows error radius Closed Actions
7910 TeamOrPersonField: readonly exception on bindig data Closed Actions
7908 Redmine communication hub slows down RegistrationWorkingSets Closed Actions
7906 AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save Closed Actions
7905 NPE in InstitutionEditorPresenter Closed Actions
7900 Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets Closed Actions
7899 enable orthographic name correction in Vaadin Closed Actions
7893 RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled Closed Actions
7892 RegistrationWorkingsetEditor: LIE creating new name for book section Closed Actions
7888 TypeSpecimenEditor: Collection date should be timespan Closed Actions
7878 Edit CollectionCode not saved Closed Actions
7870 RegistrationWorkingsetEditor: Internal error on clicking "new name" Closed Actions
7867 FieldGroup$BindException: The given field is not part of this FieldBinder in TeamOrPersonField Closed Actions
7866 Phycobank UI further label improvements Closed Actions
7846 PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar. Closed Actions
7833 submitters can access see any registration in any RegistrationWorkingSet Rejected Actions
7718 New Registration: Exclude irrelevant reference types from list of existing publications Closed Actions
7639 SpecimenTypeDesignationEditor: Altitude not saved and displayed properly Closed Actions
7559 possibly corrupted hiberante session after previous error on saving editor Closed Actions
7481 ReferenceEditor: filter inReferences by applicable reference type Closed Actions
7480 ReferenceEditor misses institution, organization and school fields Closed Actions
7245 validation of ToOneRelatedEntityCombobox not working Closed Actions
7218 SpecimenTypedesignationsWorkingsetEditor: support for Reference system Closed Actions
6869 Reference editor: Advanced mode only available for curators Closed Actions
  cdmadapter 1 Collapse all/Expand all
7903 Add treeIndex with rank to cdm light export Resolved Actions
  cdmlib 6 Collapse all/Expand all
8066 CdmUserHelper.createAuthorityFor() causes flush of pending transactions Closed Actions
7939 TaxonNodeDTO need sortIndex of Rank Closed Actions
7901 Make PreferencePredicates an interface to allow multiple implementations (e.g. for client apps, for grouping, for data type specific instances, etc.) Closed Actions
7874 TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters Closed Actions
7600 public setters for entity collections Closed Actions
7217 SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats Closed Actions
  cdmlib-remote 4 Collapse all/Expand all
8042 UI is too restricted for users with right Project Manager Closed Actions
7978 registration search result ordered by identifier descending Closed Actions
7972 explicitly allow disallow access to HTTP Invoker endpoints (/remoting/**) Resolved Actions
7924 LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter Closed Actions
  cdmserver 1 Collapse all/Expand all
6522 package cdm-server in docker container Closed Actions
  data 1 Collapse all/Expand all
7811 Import higher classifications Resolved Actions
  taxeditor 45 Collapse all/Expand all
8041 PatternSyntaxException in FeatureTreeSelectionDialog Closed Actions
8037 "Detail" is not saved in taxon node wizard Closed Actions
8032 NPE when editing Local Prefs -> Factual Data Closed Actions
8026 details view is empty for some references in bulk editor Closed Actions
7999 Allow override does not work correctly for distribution areas Closed Actions
7998 Store newly created Characters in selected vocabulary Closed Actions
7993 Display "Access Denied" dialog in case the remoting service responds with status code = 4xx Closed Actions
7985 Remove Print Series from InProceedings, use "Proceedings" Closed Actions
7954 protected vs. unproteced caches in TaxEditor Closed Actions
7941 Deduplication does not work in new taxon dialog Closed Actions
7940 "New" menu in navigator not available for certain users Feedback Actions
7934 sometimes the signs for deduplication are not shown Closed Actions
7933 Adding a new Term to the "Country" vocabulary leads to corrupt data Closed Actions
7931 add symbol2 to term detailsview Closed Actions
7929 after delete of not persisted object in bulkeditor the object is still in bulkeditor list Closed Actions
7912 Enhance checkbox tree viewer Closed Actions
7887 Use DTOs in term editor Closed Actions
7880 Implement centralized preference default loading strategy Closed Actions
7877 Form elements disappear in reference dialog after changing the reference type Closed Actions
7875 Add multiple area selection to descriptive data set editor Closed Actions
7873 Implement copy&paste for feature nodes in feature tree editor Closed Actions
7871 Open character matrix as singleton Closed Actions
7869 Run gfbio term service requests as background tasks Closed Actions
7868 Allow creating a new vocabulary in vocabulary selection dialog Closed Actions
7856 Allow local override for distribution vocabularies Closed Actions
7854 Open issues in TaxDistributionEditor Closed Actions
7850 Further problems with term editor Duplicate Actions
7849 Improve DB Preferences handling and saving in TaxEditor Closed Actions
7847 Use separate column for row state instead of symbol in titleCache column Closed Actions
7836 ClassCastException when invoking cdm light export with wrong selection Closed Actions
7806 GfBio Term Search issues Closed Actions
7794 Update TaxonNodeWizard Closed Actions
7761 Invalid designations should be displayed like misapplied names in name editor Closed Actions
7746 NPE when deleting volatile DescriptionBase Closed Actions
7737 Reference Details view does NOT give a multiple usage warning Closed Actions
7680 Refactor TaxonNodeDetailElement Closed Actions
7668 NPE when changing author Closed Actions
7649 Term editor loads/saves extremely slow Closed Actions
7367 Deleting a term in the term editor does not update the UI Closed Actions
7163 Restructure preferences Closed Actions
6951 Drag and drop does not update term hierarchy in the UI Closed Actions
6806 Add context menu to FeatureTreeEditor Closed Actions
6805 Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor Closed Actions
5926 Update labels in TermEditor for Vocabularies Closed Actions
4227 handle generated resources in eclipse workspace Feedback Actions

CDM Platform 5.4 (released on Oct 25th, 2018)

Issues: 54

Downloads: Ask the edit team for backups of this version

What's new?

  • Documentation

    • online webservice documentation was broken since 5.3. Fixed.
  • Dataportal

    • display of related taxa (misapplied names, pro parte synonyms, concept relations)
      • sort order
      • hyperlink to related taxa was missing
      • further links (???)
    • phycobank/name registration related
      • search via taxon graph (#7835)
      • improvements on name registration page
      • hide unpublished names, types and registrations (#7723)
  • TaxEditor

    • restart menu available
    • distribution editor
      • further improvements, now it is not an experimental feature anymore (but still has some open issues, we recommend to contact us before using)
      • improved area selection (still some issues)
      • predefined source selection
      • support supplemental data
      • support various symbols/labels for areas and status
    • performance
      • faster loading of details view and other views (open issues exist)
      • faster creation of factual data view right click menu
    • bulk editor
      • multiple columns available for display and sorting
      • symbol indicating deduplication status
    • navigator
      • set excluded and unplaced via right click menu
    • name relationships allow reverse direction
    • hybrid flags enabled/disabled rank specific
    • determination events can now have sources
    • factual data
      • improved labels for descriptions including sources
      • available common name references can be explicitly marked
      • reference search on alternative identifiers possible parallel to title (cache) search
      • add sources to descriptions when creating them (explicit menu item)
      • reorder menu ("new" on top, ...)
      • available distribution area vocabularies and status and common name areas definable via DB preferences
    • further database sided preferences implemented (there are still some bugs, we recommend contacting us before using DB sided preferences)
      • exclude specimen, media, import/exports, multiple classification functionality
      • further attributes for simplified name details view
      • distribution area vocabulary selection
      • distribution status selection
      • checklist perspective as start perspective
      • simplify sources view (hide IdInSource and IdNamespace)
    • client side (local) preferences stored database specific
      • if users use multiple databases client side preferences often need to be different depending on the database in use; now also client side preferences are stored for each database and not for the complete TaxEditor installation anymore (only valid for newly changed preferences)
    • NOTE: preference handling (server and client side) still has some severe open issues, we will try to work on them for the next release, so we recommend to handle with care until then
    • bugs:
      • taxon node editor does not allow editing existing taxon data anymore, only taxon node data
      • right click menu sometimes does not show up in name editor
      • exceptions when editing terms in term editor
      • freezing login dialog if no connection established
      • exception after saving bulk editor
      • exception during specimen search in bulk editor
      • exception when canceling "move elements" in factual data view
  • Browser Editor (Vaadin)

    • performance
      • big workingsets in the RegistrationWorkingSetEditor are loading much faster now. This improvement also has positive effects on other editors (#7785)
    • usability
      • multiple classifications and classification fragments can be merged into a common taxon graph structure. This graph first of all allows searching names by higher ranked names. Edits of names are automatically tracked in the graph. (#7834)
      • New mode for the TaxonNameEditor: VALIDATE_AGAINST_HIGHER_NAME_PART. This mode requires that a higher name must exising in the data base before it can be used as name part. (#7783, #7648, #7831, #7830, 7845)
      • improving some labels in the UI
    • bugs
      • memory issues (#7036, #7036)
      • problem with session attributes in different CDM Instances

# Subject Status
  cdm-dataportal 4 Collapse all/Expand all
7835 taxonGraph search block implemented Closed Actions
7788 Registration page shows registration date and office Closed Actions
7778 identifier links missing in taxon relations footnotes Closed Actions
7723 PhycoBank unpublished data must not be visible in Portal Closed Actions
  cdm-vaadin 16 Collapse all/Expand all
7855 PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly Closed Actions
7845 NamePopupEditor new Genus button should clear the genus name field in the new editor Closed Actions
7842 TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException Closed Actions
7831 VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when changing species to subspecies Closed Actions
7830 VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to testfield on rank changes Closed Actions
7824 PopupViewRegistration not removing registered views causes memleak Closed Actions
7814 Section in Name and section in Basionym, usability Closed Actions
7785 CdmUserHelper caches permission information Closed Actions
7783 NamePopupEditor new buttons for genus and species Closed Actions
7777 NPE on login attempt after logout Closed Actions
7648 Create taxonrelation to genus or species when subordinate names are created Resolved Actions
7630 blocking registration relations get lost after saving adding a typedesignation to a newly created "typification only" registration Closed Actions
7594 RegistrationWorkingsetEditor click on new serveral times Closed Actions
7222 Phycobank UI improve labels Closed Actions
7047 Vaadin UI and View scope beans are not always destroyed correctly Closed Actions
7036 correctly release vaadin view resources when the browser windows has been closed Closed Actions
  cdmlib 5 Collapse all/Expand all
7834 taxonGraph search listing all included names implemented Closed Actions
7818 TaxonRelationshipsDTOTest leaves test environment in unpredictable state Feedback Actions
7795 untilis xml DataSets creation without "[NULL]" values Closed Actions
7776 Add source of descriptive data set to SpecimenDescriptions added to it Resolved Actions
7767 Incorrect handling of secundum detail reference in formatter Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
7784 deduplicate and harmonize ClassificationController methods Closed Actions
7779 swagger UI broken after springfox-swagger2 upgrade Closed Actions
  taxeditor 27 Collapse all/Expand all
7911 Changing areas in Distribution Editor yields to wrong column labels Worksforme Actions
7886 Divide local preferences to db dependend local preferences Closed Actions
7883 IndexOutOfBoundsException in TermComboElement Closed Actions
7844 LoginDialog freezes Taxeditor if no connection can be established Closed Actions
7838 Optimize details view creation for section expansion Closed Actions
7827 LazyInitializationException when saving term editor (named areas) Closed Actions
7826 NPE after saving groupbulkeditor Closed Actions
7810 DB preference to make Specimen editors visible Closed Actions
7809 Improve namerelationship handling in editor Feedback Actions
7793 Master ticket for E+M editor issues Closed Actions
7792 Rendering of context menu of factual data view is super slow Closed Actions
7775 Factual Data label issue Closed Actions
7773 when changing rank the hybrid section is empty Closed Actions
7674 Show taxon descriptions in character matrix editor Closed Actions
7660 Indicate the row state in a NAT table via symbols Closed Actions
7502 Add further columns to bulk editor Closed Actions
7424 right click menu does not show up in name editor Closed Actions
7345 [E+M] Common name references selectable in TaxEditor Closed Actions
7283 Improvements for alternative identifier search Resolved Actions
7236 Make available distribution status a database preference for TaxEditor distribution editor Closed Actions
7235 Make available area vocabularies a database preference for TaxEditor distribution editor Closed Actions
7063 Improve the area selection wizard for distribution editor Closed Actions
6159 improve distribution editor in TaxEditor Closed Actions
3989 [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs Resolved Actions
3276 NPE for "Move Elements" context menu option Closed Actions
2444 Disable binom and trinom hybrid flag when epithets are not available Closed Actions
2406 DeterminationEventElement is lacking references Closed Actions

CDM Platform 5.3 (released on Sep 17th, 2018)

Downloads: Ask the edit team for backups of this version

Issues: 51

What's new?

  • General

    • Allow handling "continued" for reference date published for dates like 2017+
    • Allow filtering some webservices on taxonomic subtrees
  • Dataportal

    • Creation of data portals with a filter on taxonomic subtrees (e.g. families)
    • Formatting of misapplied names and invalid designations refactored (and hopefully improved)
    • Improved advanced search on taxa with geo-filter, * on start does work now, but still remaining issues for searches including * and whitespace
    • Improved handling of specimen with protected cache
    • Tree View for specimen data (still experimental)
    • Bugs
      • Fix for aggregated images not being shown anymore
      • Fix empty bibliography sections
      • Fix disabling of determination keys block in tab-less taxon pages
  • Export

    • Improved handling for types in CDM light export
  • TaxEditor

    • "Continued" for date published (see General section) available in TaxEditor
    • External links for sources (not yet implemented in data portal)
    • Label changes
    • Consistent handling of Description and DescriptionElement sources
    • Warning if Media are linked multiple times
    • Improved synchronization between views when moving factual data
    • Improved formatting of misapplied names and pro parte synonyms (synchronized with formatting in data portal)
    • Ordering misapplications with defined alphabetic order
    • Editing of supplemental data for descriptive data sets
    • Specimen Tree Editor collapsable and expandable
    • Bugs
      • Protected cache handling in details view for References
      • Exception when deleting a polytomous key
      • Dialog to avoid creating users with duplicated usernames
      • Exception when trying to create a new datasource
  • Browser Editor (Vaadin)

    • Reference editor offers field for adding notes
    • Multiple important bug fixes to increase the overall stability and reliance of the registration system
      • Preventing from creation of empty registrations
      • Problem with inserting several new authors into a new author team solved
      • Memory leak eliminated

# Subject Status
  cdm-dataportal 7 Collapse all/Expand all
7759 classification subtreefilter settings in portal Closed Actions
7720 use new taxonRelationshipsDTO webservice for all taxon relations Closed Actions
7691 Empty "Bibliography" section Closed Actions
7686 Specimen title cache issues in data portal specimen table Closed Actions
7658 use new taxon relationship DTO webservice in portal Closed Actions
7294 keys block can not be disabled in tabless taxon page Closed Actions
6289 “Back to images” link as “Back to taxon page” when in table-less mode Closed Actions
  cdm-vaadin 11 Collapse all/Expand all
7742 vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks Closed Actions
7722 NamePopupEditor: validation not working for rank genus Closed Actions
7712 PhycoBank UI Reference detail size Closed Actions
7702 corrupted hibernate session after previous error during save operation Closed Actions
7676 Suchfunktionalität in Registration UI Dateneingabe Closed Actions
7641 Reference editor: Error when incerting several new authors into a new author team Closed Actions
7624 Note field for Reference in Vaadin Closed Actions
7622 RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system Closed Actions
7585 RegistrationCuratorRoleProbe does not only check the ROLE_CURATION Closed Actions
7582 prevent from creating empty registrations Duplicate Actions
7560 LazyInitializationException (LIE) saving TaxonNamePopupEditor caused during hibernate.search indexing Worksforme Actions
  cdmadapter 1 Collapse all/Expand all
7700 use TypeDesignationSetManager for creating typedesignation string in cdmlightExport Closed Actions
  cdmlib 7 Collapse all/Expand all
7764 Fix classification and synonym bug in taxon name freetext search Closed Actions
7757 Replace deprecated hibernate @Index annotation Closed Actions
7756 org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery() Feedback Actions
7687 NPE in TypeDesignationSetManager Closed Actions
7644 Add "continued" flag to (Verbatim)Timeperiod Closed Actions
7553 move TypeDesignationSetManagerIT to cdmlib Closed Actions
5868 re-establish support for wildcard at start of query string (includes the query string '*' ) Feedback Actions
  cdmlib-remote 1 Collapse all/Expand all
7745 Subtree filter for dataportal services Closed Actions
  taxeditor 24 Collapse all/Expand all
7753 use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor Closed Actions
7738 NPE for cancel in Use existing media dialog of specimen tree editor Closed Actions
7728 NPE in wizard when changing type of reference Closed Actions
7726 Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references Closed Actions
7717 Implement "continued" in TimePeriod UI Closed Actions
7715 Description sources should be handled same as DescriptionElement Closed Actions
7706 Warning for reused Media is missing Closed Actions
7698 CCE when creating new datasource Closed Actions
7667 NoHttpResponseException for large queries in bulk editor Feedback Actions
7665 ConcurrentModificationException when closing Editor Closed Actions
7575 Implement advanced quantitative cell editor Closed Actions
7509 Aggregate and persist specimen character data from character matrix Closed Actions
7500 Can't open both related accepted taxa of reused MAN Closed Actions
7484 Protected titleCache handling not correct in Reference detail view Closed Actions
7415 Implement ExternalLinks for OriginalSources in TaxEditor Closed Actions
7412 Allow editing supplemental data for DescriptiveDataSets Closed Actions
7371 Deleting Polytomous Key throws NPE Closed Actions
7362 Implement view for Gfbio terminology service Closed Actions
6850 NPE when clearing label of "kind of" term in TermEditor Closed Actions
6742 IAE when using "Link with taxon selection" in Specimen-Editor Closed Actions
6559 Order misapplied names in name editor Closed Actions
6475 Make specimen tree editor collapsable and expandable Closed Actions
4573 Handle duplicate username, group or grantedAuthority correctly Closed Actions
3535 Automatically update descriptive view if content changed Closed Actions

CDM Platform 5.2 (released on Aug 17th, 2018)

Downloads: Ask the edit team for backups of this version

Issues: 76

What's new?

  • General

    • Some improvements for ABCD import
    • Some minor improvements for CDM light export
    • New webservice for formatted taxon relationships (misapplications, pro parte synonyms, concept relationships) - available in data portal in next version
  • Dataportal

    • Reference page
      • proper formatting of taxon names in registration summary
      • proper handling of date published without end date
    • Specimen tab
      • remove "associated with" in compressed table
      • correct handling of freetext in altitude, distance to gorund and watersurface in default specimen table
      • correct handling of missing values for numeric values (do not show 0 anymore) in default specimen table
    • Name Registration
      • TBC
  • TaxEditor

    • Bulk editor
      • improve new implementation with so called NAT tables
      • asynchronous loading of data for large datasets
    • specimen
      • remaining issues for determinations in details view
    • Bugs
      • Taxa, being misapplied names or pro parte synonyms elsewhere, always show misapplied name details view
      • specimen server preferences are not saved
      • exception handling for media with corrupted metadata
      • exception out of bounds exception after deleting record in bulk editor
      • problems with progress monitor for setting publish flag for subtree (maybe some issues open)
      • dragging a misapplication on itself throws exception
      • multiple representations exception when adding annotation in bulk editor
    • experimental features
      • data aggregation in character matrix
      • improved workflow for editing descriptive data
  • Browser Editor (Vaadin)

    • TBC: name registration issues

# Subject Status
  cdm-dataportal 14 Collapse all/Expand all
7615 Registrations not searchable in the PhycoBank portal Closed Actions
7611 media types with media uris are clickable Closed Actions
7605 harmonize cdm_tagged_text_to_markup() with tagged text strategy in cdmlib Closed Actions
7602 reference page: proper formating of taxonnames in registration summries Closed Actions
7601 date published time period in reference page shows 'to' even if end date is missing Closed Actions
7596 PhycoBank Portal - Formatting Closed Actions
7595 PhycoBank Portal - Order Reference name Closed Actions
7592 Search Button PhycoBank Test Closed Actions
7562 Specimen table "Associated with" taxon is irritating and needs to be removed, replaced Closed Actions
7552 use TaggedText.entityReference to add style and uuid to html tags Closed Actions
7496 TaxonNodes in cdm_taxontree can either link to taxon or reference search result pages Closed Actions
7495 Registration page implemented Closed Actions
7494 RegistrationSearch implemented Closed Actions
6563 Display altitude, distance to Ground and watersurface correct handling of freetext Closed Actions
  cdm-vaadin 29 Collapse all/Expand all
7629 creating a typification only registration should not be possible if the names protologue is in the current workingset Closed Actions
7628 Create registration for existing name (typification only) creates two registratios Closed Actions
7617 Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCode nicht auswählbar Closed Actions
7591 Vaadin Layout Reference new Closed Actions
7588 ToOneRelatedEntityCombobox: edit button must not be enabled when value is null Closed Actions
7586 com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetEditor Closed Actions
7583 NPE on logout in registration list view Closed Actions
7574 IllegalStateException: Multiple representations ... when saving ReferenceEditor with in Reference ... Closed Actions
7573 CollectionPopEditor superCollection only visible for advanced users Closed Actions
7572 SpecimenTypeDesignationEditor: Collection combobox shows collection.code and collection.institution Closed Actions
7571 Collection editor has field to select and edit the institution Closed Actions
7570 Institution editor implemented Closed Actions
7569 SpecimenTypeDesignationEditor: Typedesignations should be ordered Closed Actions
7568 SpecimenTypeDesignationEditor: Collector Field not following the readonly state of the editor. Closed Actions
7566 TeamOrPersonField: some Persons can not be selected Closed Actions
7557 TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a sub popup editor Closed Actions
7554 TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state Closed Actions
7547 ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly Closed Actions
7546 Better guidance for users when creating registrations for exising names Closed Actions
7545 IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration Closed Actions
7535 TeamOrPersonField: remove OK button an select the chosen enitity immediately Closed Actions
7534 registration list filters preserved in session Closed Actions
7533 add typeStatus filter to registration list Closed Actions
7528 Allow changing the Registration status in the RegistrationWorkingsetEditor Closed Actions
7524 TaxonNameEditor blocks entering new names for genera Closed Actions
7361 Consistent UI concept for create, new, add, remove, delete, edit buttons Closed Actions
7358 Show warning when browser history back is used while popup editors are open Closed Actions
7274 GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit Closed Actions
7131 Registrations ListView has pager to browse the whole result set Closed Actions
  cdmadapter 1 Collapse all/Expand all
7643 cdmlight export: for bibliographic short citation use the freetext of the date as default Closed Actions
  cdmlib 13 Collapse all/Expand all
7608 TypeDesignationSetManager: string representations for media types are missing Closed Actions
7607 TypeDesignationSetManager: remove brackets from type representations Closed Actions
7590 findByTitleWithRestrictions allows combining Restrictions by OR Closed Actions
7555 TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis" Closed Actions
7551 TypeDesignationSetManager provides summary as TaggedText Closed Actions
7550 Move UserHelper from cdm-vaadin into cdmlib Closed Actions
7542 Move synonym of homotypical group to taxon does not move the homotypical group correctly Closed Actions
7531 PermissionDeniedException on flushing registration with modified status even if the user has the required authority Closed Actions
7527 CdmEntityDaoBase.*ByParam() public and also available in the service layer Closed Actions
7525 IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria Closed Actions
7429 Improve parsing and formatting for VerbatimTimePeriod Closed Actions
6695 module cdmlib/services should not be an osgi bundle Closed Actions
6682 Formatter and DTO for taxon relationships (e.g. misapplied names) Closed Actions
  cdmlib-remote 4 Collapse all/Expand all
7578 preseve null values in all mesurements during serialization of webservice responses Closed Actions
7561 OccurrencePortalController and FieldUnitDTO should not allow passing the determintation, associated name as argument Closed Actions
7348 RegistrationDTO webservices implemented Closed Actions
6967 RegistrationController identifier endpoints implemented Closed Actions
  taxeditor 15 Collapse all/Expand all
7681 Update date field when editing parse field in TimePeriodElement Closed Actions
7679 NPE when creating root child in classification Closed Actions
7677 Nomenclatural Status is always set to nom illeg in details view Closed Actions
7647 accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view Closed Actions
7645 specimen admin preferences are not saved Closed Actions
7638 problem with media data missing meta data Resolved Actions
7614 IndexOutOfBoundsException after deleting in bulkeditor Closed Actions
7603 Changing a user group does not work as expected Closed Actions
7576 Set Publish Flag for Subtree Dialog - Problems with Progressmonitor Closed Actions
7549 Show tooltip for data aggregation in character matrix Closed Actions
7544 Dragging a misapplication onto itself throws an exception in name editor Closed Actions
7518 remaining issues for usage of NatTable for bulkeditor Closed Actions
7505 IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor Closed Actions
7418 remaining specimen determination details view issues Closed Actions
6321 Implement parallel loading + progress bar for loading objects into the bulk editor Closed Actions

CDM Platform 5.1 (released on Jun 27th, 2018)

Downloads: TaxEditor, CDM Server, Data Portal

Issues: 42

What's new?

  • General

    • update script to model 5.0 fixed for PostGreSQL databases
    • freetext search indexing fixed after change in misapplied names
    • term related webservices include language information
  • Dataportal

    • Withheld taxa with publish=false from dataportal results (not yet implemented for freetext search on factual data)
    • External Links fixed
    • Default visibility for pro parte and partial synonyms and misapplied names
    • Find pro parte and partial synonyms in search
    • Creation date for media visible
  • TaxEditor

    • Recently used references list for reference search dialog (bibliographic references only)
    • Find pro parte and partial synonyms in search
    • Default value for taxon publish flag configurable (true, false, inherit)
    • Allow multiple selections for moving taxa
    • Progress monitoring for moving taxa
    • Default nomenclatural status is nom. illeg.
    • Further support for eclipse4
    • Bulk editor
      • change table type (using so called NAT tables now, which are more powerful)
      • sorting for columns by clicking on column headers
      • multi select for deduplication more user friendly
    • Bugs
      • fixed lazy loading exception for misapplied names with type specimen
      • incorrect title cache creation for persons with protected title cache
      • new team member added to the end of the list now
      • some File->New dialogues fixed
  • Browser Editor (Vaadin)

    • Improved consistency in taxon names by restricting the higher name parts like genus name or species epithet to names which are already known to the system. (#7364)
    • Support for validations and replaced synonyms in the TaxonNameEditor
    • Login dialog can be submitted by pressing the enter key
    • Fields visibility in the ReferenceEditor adapts to the Reference type
    • A Field for editorial notes is now available in TaxonName , NameType and SpecimenType editors
    • Bugs
      • Readonly state problems fixed
      • Fixing incomplete terms

# Subject Status
  cdm 2 Collapse all/Expand all
7469 Updated script for individualCount column type in Postgres Closed Actions
7468 Updated script for mediaCreated does not work for PostGreSQL Closed Actions
  cdm-dataportal 3 Collapse all/Expand all
7451 ExternalLinks [ext-links]: update search urls Closed Actions
7417 Make pro parte and partial synonym relationships always visible in data portals Closed Actions
6659 Show mediaCreated in dataportal Closed Actions
  cdm-vaadin 14 Collapse all/Expand all
7498 ClassCastException on saving popup editor for validated name Closed Actions
7482 TaxonNameEditor relpacedSynonym not set after adding or editing the related name Closed Actions
7477 TeamOrPersonField: ToManyRelatedEntitiesListSelect blocks removing new entries Closed Actions
7476 RegistrationWorkingSetEditor: existing name combobox broken after saving a popup editor Closed Actions
7475 error when saving Reference editor with new empty Person in Team when OK or NEW was not pressed Closed Actions
7461 Add oder by ISSN an ISBN to the PagingProvider for all Reference comboboxes Closed Actions
7458 Note field for TaxonName , NameType and SpecimenType editors Closed Actions
7453 Registration Workingsets inconsistent for registrations for sections of publications Closed Actions
7386 TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym Closed Actions
7364 TaxonNameEditor supports editing of a validated name Closed Actions
7338 Validate taxon name against the higher taxon name Closed Actions
7313 eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary Closed Actions
7257 Activate Enter key to send login in vaadin login Closed Actions
7223 ReferenceEditor: disable fields depending on the Reference type Closed Actions
  cdmlib 6 Collapse all/Expand all
7486 Fulltext taxon and name search not correct for Synonym based queries Closed Actions
7478 Fix pro parte synonym search Resolved Actions
7467 taxon name parts lookup method with support for wildcard searches Closed Actions
7445 Empty term uri and isoXXX fields should be null Closed Actions
7340 OderedVocabularies are initialised with DefinedTerms Closed Actions
4101 Default value for publish bit of new taxa must be configurable via DB preferences Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
7508 Add language information to term representations Closed Actions
3560 Withheld unpublished taxa from webservice used in E+M dataportal Resolved Actions
  data 1 Collapse all/Expand all
7092 Adapt dates in Nicks images after mediaCreated became TimePeriod Resolved Actions
  taxeditor 14 Collapse all/Expand all
7499 NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel Closed Actions
7472 lazy loading exception for MAN with type specimen Closed Actions
7464 make move Taxonnodes a longrunning task Closed Actions
7463 Move taxonnodes should be available for multiple selection Closed Actions
7452 TitleCache is not correctly set for new Person Closed Actions
7439 Use NatTable for BulkEditor Closed Actions
7430 New team members should be added at the end of the member list Closed Actions
7422 Set nom. illeg as default in NomenclaturalStatusType ComboBox Closed Actions
7227 New name bulk editor shows all menu entries Worksforme Actions
7010 Adapt handlers for multiple selection in e4 views Closed Actions
6598 Migrate commands and handlers Closed Actions
4363 Show more informative message for unsupported specimen structures in specimen bulk editor Closed Actions
4362 Some File->New dialogs do not work Closed Actions
3984 Easier reference selection - recently used references Closed Actions

CDM Platform 5.0 (released on May 16th, 2018)

Issues: 123

What's new?

  • General

    • Project Website (cybertaxonomy.org) migrated to Drupal 8
    • Demo servers renamed to demo I and demo II
    • Improved performance for saving
  • Model

    • Micrometer added to measurement units
    • Person last name and first name renamed to given name and family name
    • Add second under definable symbol to defined terms (e.g. for better representations of distribution status)
    • Change type of Media.mediaCreated from DateTime (single date) to TimePeriod (start and end time, freetext, ...)
    • Allow time for TimePeriod (before only dates were handled) - not yet handled in TaxEditor
    • Support for zoological in-Authors
    • Add verbatim date to publication date of references
    • Individual count for occurrence data changed from numbers to text
    • Added external links to sources (not yet supported in TaxEditor)
    • Rename "WorkingSet" to "DescriptiveDataSet" and make it a so called identifiable entity (=> some further attributes like sources, extensions, ...)
    • Added nomen oblitum to zoological name status vocabulary
  • TaxEditor

    • Further migration to Eclipse4 (e4) => migration finished now except for some open issues.
    • Hardcoded update sites to avoid problems with automated TaxEditor update in future (and for development)
    • Download site shows version number and release date
    • Name editor
      • Specimen Type Designation ordered by type
      • Pro parte and partial synonyms handled similar to misapplied names (internally handled as concept relationships)
      • Allow editing pro parte and partial misapplied names
    • References
      • Reference search via alternative identifiers available
      • References have verbatim date
    • Media representations have fixed order (by creation date in database)
    • Allow opening gathering events from referencing objects view
    • New Dialog for editing server based preferences, including some more preferences (but still incomplete)
    • Deleting names and taxa for specimen determinations
    • Usage view migrated to e4 and fully functional again
    • Taxon navigator
      • fully refactored underlying data model
      • improve performance
      • refresh mechanism improved for changes elsewhere
      • Progress monitor and cancel for set secundum for subtree (not yet available for set publish for subtree)
    • Feature tree editor
      • Multi-language support for feature tree editor
      • Details view and supplemental data view for feature tree/nodes
    • Rights&Roles: drag&drop for rights on features in rights editor
    • Facts
      • Fact label in fact view truncated and line breaks removed
      • Fact have a time scope now in facts details view
    • Refresh:
      • Taxon navigator after changes to taxa, names or sort order
      • Name editors with specimen types after a specimen has been deleted
      • Name editor after selecting a new taxon for a misapplied name
      • Name relationships and similar data in details view after selecting a new name for a taxon
      • Open taxa refreshed after setting secundum or publish flag for subtree
      • Refresh reference title cache after changing in-reference title in edit dialog
    • Renaming:
      • Person: lastname => family name; firstname => other/given name
      • Specimen Bulk Editor => Specimen Editor (List) and Derivative Editor => Sepcimen Editor (Tree)
      • Working Set Editor => Descriptive Data Editor
    • Distribution Editor
      • Available areas as server based preferences
      • Area selection dialog improved
      • some further bug fixes (still some open)
    • Bug fixes:
      • Selection of nomenclatural code in "new taxon" dialog
      • Accepted taxon and new synonym disappear after creating homotypic synonym
      • Right click menus in name editor
      • correct handling of doubtful in misapplied names
      • Missing labels for gathering events in referencing objects view
      • dirty flag after number recomputation in polytomous key
      • saving of preferences only after pressing "Finish" button
      • Exception after selecting a team after team has been merged in bulk editor
      • Show only accepted taxa for concept relationship taxon selection and polytomous key taxon selection
      • Exception when searching for "?" in Taxon search dialog
      • Exception when creating the first node in polytomous key
      • To many menu entries in a fresh name bulk editor
      • Do not allow self-referencing name relationships
      • Remove "open in ... referencing objects view" where not appropriate
      • Refresh issues for details and supplemental data view
      • Exception when deleting a type specimen
      • Excluded and excluded note notupdated in taxon node wizard
      • Removing country not possible in specimen editors
      • Dirty flag handling when deleting a synonym in name editor
      • Term could be opened multiple times for same term type, now they are singletons
      • Remove old data when again parsing a time period
  • Browser Editor (Vaadin)

    • Many improvements in name registration editor
    • Help for distribution editor
    • Sorting of areas in area selection dialog

# Subject Status
  cdm 17 Collapse all/Expand all
7405 Rename WorkingSet to DescriptiveDataSet Closed Actions
7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary Closed Actions
7334 Make pro parte and partial synonyms real concept relationships Closed Actions
7285 Edaphobase import: implement ranks Cohort, Hyporder Closed Actions
7277 Add micrometer to MeasurmentUnit Closed Actions
7238 Rename lastName and firstName Closed Actions
7144 Add country as level to all areas of type Country. Closed Actions
7109 Rename nom. valid to nom. val. Closed Actions
7096 Add second symbol attribute to DefinedTermBase Resolved Actions
7074 Use TimePeriod for Media.mediaCreated Closed Actions
6943 Allow zoological in-Authors in taxon names Closed Actions
6879 Update uuid and name for admin user group Closed Actions
6752 Add verbatimDate Closed Actions
6720 Make individualCount a string Closed Actions
6699 Delete term version from CdmMetaData Closed Actions
6588 Add URL and URL comment to OriginalSource / ExternalLink Closed Actions
2335 Make WorkingSet IdentifiableEntity Closed Actions
  cdm-vaadin 24 Collapse all/Expand all
7425 Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopupEditor Closed Actions
7387 TaxonNamePopEditor: ConstraintViolationException on saving a basionym Closed Actions
7385 TaxonNameEditor adapt field visibility to rank Closed Actions
7382 SpecimenTypedesignationsWorkingsetEditor blocks saving as long as typeDesignations are missing Closed Actions
7381 LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkingsetEditor for Registration with existing name Closed Actions
7366 TeamOrPersonField readonly if users lacks edit permissions Closed Actions
7365 enable CdmPopupEditors to operate on CdmDecoratorDTOs Closed Actions
7363 TaxonNameEditor supports replaced synonyms Duplicate Actions
7359 cdm popuop editors in readonly mode if the user is not permitted to edit Closed Actions
7355 TaxonNamePopupEditor: newly created nomenclatural reference should be selected immediately Closed Actions
7353 SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kindOfUnit Closed Actions
7350 Collection date is not being saved Closed Actions
7349 RegistrationPopupEditor fails saving new References with new Team with 2 new memers Closed Actions
7344 TaxonNamesEditor to fill authorship fields automatically if nomref and basionym are set? Closed Actions
7343 PersonField allows editing the nomenclaturalTitle Closed Actions
7337 creating of new NameTypeDesignation for empty registration ends up without typified name Closed Actions
7333 LIE when creating registration for existing name Closed Actions
7322 registration workingset editor handles multiple different submitters correctly Closed Actions
7314 support for dot and comma in Georeferenz, Error radius, Altitude, Distance to ... Closed Actions
7269 Use redmine as message hub for submitter curator communication Closed Actions
7249 NameTypeDesignationEditor delete not working Closed Actions
7244 DistributionStatus editor help Resolved Actions
7241 Missing rights are not correctly indicated in Vaadin distribution editor - flexible vaadin errorhandler is needed Closed Actions
6707 transient properties managed by ToManyRelatedEntitiesListSelect are not updated on save Duplicate Actions
  cdmlib 10 Collapse all/Expand all
7392 Remove Cascade from relations Closed Actions
7390 possible permission clash when adding basionym Duplicate Actions
7368 cdm entities report persistence state Closed Actions
7360 users NOT having DELETE are permitted to delete References Closed Actions
7354 DerivedUnitConverter handles associated SpecimenTypeDesignation correctly Closed Actions
7323 RegistrationVoter ignores uuid if propery given Closed Actions
7308 Add nomen oblitum to zoological taxon name status Closed Actions
7289 hibernate warning HHH90000003 pollutes log files Closed Actions
7287 Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite Closed Actions
7209 use git repos instead of svn in all pom.xml Closed Actions
  data 1 Collapse all/Expand all
7374 Set titleCache of feature trees to protected as long as i18n support does not yet exist. Closed Actions
  documentation 3 Collapse all/Expand all
7001 Show date and/or version-number on taxeditor download site Closed Actions
6572 Adapt/Add Wiki pages for e4 development Closed Actions
6158 Update EDIT documentation from svn to git Closed Actions
  taxeditor 68 Collapse all/Expand all
7421 Implement verbatim date for references in TaxEditor Closed Actions
7411 adapt mediaCreated in taxeditor to timePeriod Closed Actions
7399 Adding taxon nodes to working sets leads to MultipleRepresentationException Closed Actions
7395 Selection of nomenclatural code does not work in new taxon dialog Closed Actions
7393 Fix regressions resulting from cascade removal from relationships in TaxEditor Closed Actions
7379 right click menu of accepted taxa should not show "change to" Closed Actions
7378 doubtful in misapplied names incorrect Closed Actions
7336 Implement partial misapplied names in TaxEditor Closed Actions
7335 Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor Closed Actions
7329 Unify naming for both specimen editors (bulk and hierarchy) Closed Actions
7328 Add label provider for GatheringEvent in referencing objects view Closed Actions
7326 NPE when setting focus on specimen in Specimen Editor (hierarchy) Closed Actions
7325 Taxeditor uses CdmTransientEntityCacher from cdmlib-cache Closed Actions
7324 Add "Open in.." for GatheringEvents in ReferencingObjectsView Closed Actions
7320 dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode editor Closed Actions
7312 some preferences are saved immediately, cancel has no effect Closed Actions
7307 Synonyms should not be shown when creating a new concept relation Closed Actions
7301 Refresh open name editors when deleting specimen used in type designation Worksforme Actions
7300 NPE when selecting team member after merge in bulkeditor Closed Actions
7295 When creating homotypic synonym the accepted taxon and new synonym are not shown anymore Closed Actions
7292 TaxonSelectionDialog throws error when searching for '?' Closed Actions
7291 PolytomousKey Node should not allow to search for synonym Closed Actions
7290 Creating the first node in a new polytomous key throws NPE Closed Actions
7284 Multiple taxeditor jars created in p2 update for a single jenkins build Closed Actions
7282 Still remaining feature tree editor issues Closed Actions
7279 p2 sites are extremely huge Closed Actions
7268 Re-implement own preference dialog Closed Actions
7239 Rename last name by family name and first name by "Other/given names" Closed Actions
7230 Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4) Closed Actions
7226 Name relationship Dialog shows same name Closed Actions
7215 Implement pro parte misapplied names in TaxEditor Closed Actions
7102 Enable EDIT and DELETE for specimen determinations Closed Actions
7079 P2 updates not found Closed Actions
7065 When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled Closed Actions
7031 Open in referencing objects view must not show "Open in referencing Objects" Closed Actions
7009 Replace part descriptor IDs in open handler with AppModel constants Closed Actions
6973 Refreshing details and supplemental view Closed Actions
6931 Migrate uses view Closed Actions
6925 Migrate general framework Closed Actions
6913 Remove e3 parts and dependencies Closed Actions
6909 Migrate taxon navigator Closed Actions
6838 Implement i18n for FeatureTreeEditor Closed Actions
6804 Order areas in Distribution Selection Editor Resolved Actions
6779 Allow drag&drop for features in GrantedAuthority editor Closed Actions
6769 Usages can not be created anymore in usage perspective Closed Actions
6746 Implement DetailsView and show SupplementalDataView for Feature Tree and FeatureNode Closed Actions
6668 NPE in DetailsView when deleting a type specimen Closed Actions
6568 Migrate perspectives Closed Actions
6565 [MASTER] Eclipse 4 Migration Closed Actions
6533 New taxon wizard does not refresh is excluded and excluded note information Closed Actions
6526 Show types in correct order Closed Actions
6455 Remove not possible for country in field/derived unit details view Closed Actions
6437 Always update titleCache for nomenclatural reference Closed Actions
6389 Returning a Map in cdmlib leads to data loss Closed Actions
6330 Defined sort order for Mediarepresentations Closed Actions
6318 Truncate TextData in FactualData View Closed Actions
6219 Deleting synonym is persisted immediately, but the editor is set dirty Closed Actions
5783 Rename demo instances back to demo I and demo II Closed Actions
5696 When selecting a new name for a given taxon the name relationships are not updated Closed Actions
5687 search for alternative identifiers Closed Actions
5637 Selecting a new name for a taxon does not update the details view Closed Actions
5193 Changing the name of a taxon does not refresh the taxon navigator Worksforme Actions
4136 authorship part of names not being refreshed in taxon navigator Closed Actions
4048 Changing the name in free text editor does not refresh the taxon navigator view Worksforme Actions
3746 Implement time period scope for description elements in TaxEditor Closed Actions
3161 Term Editors are no singletons Closed Actions
2450 DateTime field - Old values do not get deleted if you enter a new value to the parse field Closed Actions
2380 TaxonNavigator should work with DTO objects instead of full blown cdm instances Closed Actions

CDM Platform 4.14 (released on Feb 15th, 2018)

Issues: 26

What's new?

  • General / Model

    • Export:
      • CSV_Print and CDM light: Progress monitor added (hopefully also fixes the problem of failing long running exports)
  • TaxEditor

    • Distribution Editor
      • Bugfix: Status not deletable
      • Natural sorting of areas
    • Feature Tree editor: several bugfixes
    • Rights Editor:
      • Allow Drag&Drop
    • Taxon Navigator:
      • Handling of excluded and unplaced (move to the end and use icon)
    • Bugs
      • Protected Cache for person editing not working
      • Opening a type specimen from referencing objects view throws an exception
  • Dataportal

    • Bugfix: Misapplied name search not working
  • Browser Editor (Vaadin)

    • Registration UI completed

# Subject Status
  cdm-dataportal 2 Collapse all/Expand all
6679 search for misapplied names in portal does not work Closed Actions
6075 harmonize ' Enable auto-suggest' option with existing code Closed Actions
  cdm-vaadin 12 Collapse all/Expand all
7247 TypeDesignationSetManager must not bundle NameTypes in workingset Closed Actions
7246 ToOneRelatedEntityReloader.valueChange() not triggered after editing bean chosen in ToOneRelatedEntityCombobox or ToManyRelatedEntitiesComboboxSelect Closed Actions
7240 Rename last name by family name and first name by "Other/given names" Closed Actions
7231 replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts Closed Actions
7229 obsolte code in AbstractEditorPresenter.onEditorDeleteEvent? Closed Actions
7224 PersonField: implement support for 'initials' field Closed Actions
7207 TeamOrPersonField and PersonField comboboxSelect is configurable to use different cache types Closed Actions
7195 RegistrationWorkingsetEditor creates blocking relations for new basionym names Closed Actions
7174 SpecimenTypeDesignationWorkingsetEditor image reference add and edit problems Closed Actions
6811 View and according Presenter are initialized 3x Closed Actions
6740 Popup Editor for NameTypeDesignation Closed Actions
6562 vaadin mvp framwork presenters without view Closed Actions
  cdmlib 2 Collapse all/Expand all
7262 add progress monitor to csv print export and cdm light export Closed Actions
7250 add null checks to TeamDefaultCacheStrategy Closed Actions
  data 1 Collapse all/Expand all
7252 createdby_id often is null Closed Actions
  taxeditor 9 Collapse all/Expand all
7263 Protected title cache for persons does not work Closed Actions
7237 Status are not deletable in TaxEditor distribution status Closed Actions
7234 Make areas in TaxEditor distribution editor sortable Closed Actions
7076 Add Nebula CompositeTable as direct dependency Closed Actions
7030 Opening referenced object of type designation throws NPE Closed Actions
7013 NonUniqueObjectException for setSecundumReferenceForSubtree Closed Actions
6786 Remaining feature tree editor issues Closed Actions
6751 After shutdown error message in log file Worksforme Actions
6547 Implement excluded and unplaced in taxon navigator Closed Actions

CDM Platform 4.13 (released on Feb 1st, 2018)

Issues: 61

What's new?

  • General / Model

    • Export:
      • DwC-A and CDM light: Add rank and area filter (not yet available in TaxEditor)
    • Added pro parte misapplied name relationship (not yet fully supported by TaxEditor and Dataportal)
    • Bugs:
      • DwC-A Export did use incorrect file endings
      • DwC-A Export include headers fixed
  • TaxEditor

    • Exports
      • DwC-A and CDM light: allow filtering for published taxa/synonyms only
      • DwC-A: filtering on single taxa
    • Performance
      • After selecting an area in area search dialog
    • Security:
      • Allow to fully forget "remembered" password
    • Taxon Navigator:
      • Consistent delete dialog for single nodes and nodes with children
      • Set for Subtree functionality: change of data synchronized with open name editors (still some open issues)
    • Search Dialogues:
      • Taxon search: Allow sorting by rank, too
    • Bugs
      • Fix in Caching mechanism: hopefully fixes many of the "multiple representations" exceptions
      • Bulk Editor
        • Set focus to newly created record
        • Exceptions when using wildcards for user and group search
      • TaxonNavigator:
        • ClassCast exceptions when synchronizing with NameEditor
        • Failing behavior after an exception
      • Default Classification for "Move factual data" dialogue
    • Character data editing (experimental)
      • New character matrix editor (only available as experimental feature)
  • Dataportal

    • FSI Viewer for media did not work for Chrome and other browsers anymore
  • Browser Editor (Vaadin)

    • Many improvements in name registration editor (not yet publicly available)

# Subject Status
  cdm 2 Collapse all/Expand all
7158 Add pro parte misapplied name to the concept relationship types Feedback Actions
7114 DerivedUnitConverter.convertTo() creates duplicate entities Closed Actions
  cdm-dataportal 1 Collapse all/Expand all
7164 fsi viewer no longer works in chrome browser Closed Actions
  cdm-vaadin 25 Collapse all/Expand all
7206 CdmEntityCache not correctly updating with entitiy graphs loaded afterwards Closed Actions
7205 use edit and create button for basionyms in the TaxonNamePopupEditor Closed Actions
7204 ToManyRelatedEntitiesListSelect with edit and create button Closed Actions
7197 system-admin autheticated through RunAsAuthenticator can stay authenticated after RuntimeException Closed Actions
7194 NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox Closed Actions
7187 ReferenceEditor: saving with DOI casues exception Closed Actions
7182 ToOneRelatedEntityCombobox implement setReadOnly() Closed Actions
7181 TeamOrPersonField implement setReadOnly() Closed Actions
7172 creating Sections must be disallowd in StartRegistrationViewBean Closed Actions
7171 TaxonNameEditor: mode which only allows adding nomenclatory references which are sub references of the current one Closed Actions
7170 TaxonNameEditor: option to suppress CombinationAuthorshipField & BasionymAuthorship when it contains no data Closed Actions
7169 RegistrationWorkingSet class must use the in-reference as base citation in case a Section is used as nomenclatural reference. Closed Actions
7154 CdmEntityCache can update cached entities Closed Actions
7150 GrantedAuthorities & PermissionVoter for Cdm Collection type Closed Actions
7149 Collection Editor implemented Closed Actions
7148 GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group Closed Actions
7135 TeamOrPersonField allows selecting from existing Persons and Teams Closed Actions
7132 allow opening editors for name and typedesignations in readonly mode Closed Actions
7130 Registrations ListView allows filtering the list of registrations Closed Actions
7103 verify, fix, improve SpecimenTypeDesignationWorkingSetServiceImpl delete functions Closed Actions
7082 Implement integration test for the SpecimenTypeDesignationWorkingsetEditorPresenter Closed Actions
7070 Registration workingset support for sections Closed Actions
6871 TaxonNameEditor modes for basionym, replaced synonym and validation Closed Actions
6867 explicitely assign and revoke UPDATE & DELETE permission per enitity in the registration workflow Closed Actions
6796 PersonField: add UI Element to choose from existing Persons Closed Actions
  cdmadapter 3 Collapse all/Expand all
7216 Import pteridophyta for Cuba checklist Resolved Actions
7180 cdm light export optionally filters by published flag Closed Actions
6984 withHeader is not yet working in DwC-A export Closed Actions
  cdmlib 11 Collapse all/Expand all
7219 CacheLoader.loadRecursive() fails handling proxy objects correctly Closed Actions
7212 CacheLoader replaces loaded entities with uninitialized proxies Resolved Actions
7201 [DISCUSS] Should we remove created comparison from CdmBase.equals? Closed Actions
7175 DwC-A export optionally filters by published flag Closed Actions
7173 RegistrationDao supports sections Closed Actions
7166 Implement area filter for TaxonNodeFilter Closed Actions
7165 Extend TaxonNodeFilter with rank filtering Closed Actions
7161 DwC-A meta.xml file csv file references invalid Closed Actions
7160 DwC-A meta.xml file has wrong file extension Closed Actions
7137 Registration Identifier minter implemented Closed Actions
7077 INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDesignation) should delete the type designation also from Registrations Closed Actions
  data 1 Collapse all/Expand all
7055 automatic creation of registrations from name extension only for latest reference Closed Actions
  taxeditor 18 Collapse all/Expand all
7228 Add concept and referencing objects view to supplemental view layer stack Closed Actions
7196 Check existing data when adding specimens to CharacterMatrix Closed Actions
7188 namedArea selection dialog needs too long to set the selected area Closed Actions
7153 Implement possibility to "logout" completely from TaxEditor Closed Actions
7146 ClassCastException when clicking on synchronize button Closed Actions
7128 NPE in selection dialog Closed Actions
7127 dangling metacharacter exception in selection dialog Closed Actions
7111 synchronize button does not work as expected Closed Actions
7095 Implement Character Matrix Closed Actions
7086 Implement WorkingSet Editor Closed Actions
7078 sort result in taxon selection dialog Closed Actions
7069 Delete taxon node should have consistent configuration Closed Actions
7068 Move factual data to a new taxon should use same classification as default Closed Actions
7008 Migrate export wizards Closed Actions
6800 Allow all filters for DwCA export in TaxEditor Closed Actions
6762 Implement Character Editor Closed Actions
6728 Changing author data when editing a reference does neither update the reference titleCache nor the author label Closed Actions
6538 Add perspectives for working character data/matrix Closed Actions

CDM Platform 4.12 (released on Dec 5th, 2017)

Issues: 25

What's new?

  • General / Model

    • Better support for SQL Server (not yet ready)
    • Tropicos import (not yet available through TaxEditor)
  • TaxEditor

    • Search Dialogs fully refactored
      • improve performance
      • improve usability (filter button, new record buttons)
      • fix bugs (multiple representation exceptions)
      • migration to eclipse4
    • Specimen Editor
      • edit & delete buttons added to specimen determinations
    • Name Parser
      • better recognition of reference duplicates
      • remove empty spaces in nomenclatural author names
    • bug fixes
      • exception when reusing taxon names
      • widget is disposed exceptions
      • multiple representation exceptions in bulk editor and specimen tree editor
      • refresh of taxon title after taxon/synonym swap
      • ask for saving when closing workbench
  • Browser Editor (Vaadin)

    • Distribution Editor
      • Ordering of areas by vocabulary defined order
      • German translation

# Subject Status
  cdm-dataportal 1 Collapse all/Expand all
7108 supress unwanted sourcetypes in handle_annotations_and_sources() Closed Actions
  cdm-vaadin 5 Collapse all/Expand all
7636 remove obsolete code which dissociates removed TypeDesignations from Registrations Closed Actions
7115 Order distribution areas by vocabulary order in distribution editor Closed Actions
7097 Internationalization for distribution editor Resolved Actions
7083 Implement URI form element for SpecimenTypeDesignationDTOs Closed Actions
7059 use kindOfUnit for TypeDesisgnations instead of DerivationEvent type Closed Actions
  cdmadapter 1 Collapse all/Expand all
6965 Tropicos Import Closed Actions
  cdmlib 6 Collapse all/Expand all
7121 adapt remaining UuidAndTitleCache methods to use filter Closed Actions
7094 Remove empty spaces in nomencl. title of persons Closed Actions
7080 Fix matching for empty time periods Closed Actions
6955 NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading Closed Actions
6780 ConversationHolder isTransactionActive() returns true even if the transaction is completed Closed Actions
4957 MS SQL Server not functional as it does not allow more than 2100 parameters Closed Actions
  taxeditor 12 Collapse all/Expand all
7126 supplemental data view shows the last selected name data when scrolling down in details view Closed Actions
7125 widgetIsDisposed exceptions when clicking in another part Closed Actions
7124 Avoiding multiple repesentation exceptions by removing the conversation from selection dialogs Closed Actions
7123 Multiple Represenation Exception in Derivate View and bulk editor Closed Actions
7122 titlecache of the taxon is not updated when swap accepted taxon and synonym Closed Actions
7120 implement new buttons for selection dialogs Closed Actions
7119 implement filter button for selection dialogs Closed Actions
7118 migrate selection dialogs Closed Actions
7117 Some bugs in Misapplied Name View after e4 migration Closed Actions
7098 reuse name does not work Closed Actions
7073 add extension to a name does not result in a dirty state Closed Actions
6763 Editors do not ask for saving when closing the workbench Closed Actions

CDM Platform 4.11 (released on Nov 11th, 2017)

Issues: 40

What's new?

  • General / Model

    • Some minor improvements in the rights&roles module
  • DataPortal

    • Display name registration metadata in footnotes
  • TaxEditor

    • Eclipse3->Eclipse4 migration
      • migration
        • Editors: name editor, bulk editors, group authority editor
        • Views: search result, concept graph
        • Modules: molecular module, polytomous key module
        • Dialogues: preferences, import wizards and views,
        • others: taxon navigator, main menu, theme
      • bugfixes for bugs that came with the previous migration
    • Distribution editor: add possibility to add references to distributions (first version)
    • some improvements for the import/export wizard (e.g. order of configuration pages)
    • Setting publish flag for a classification subtree
    • Media View shows preview (first version, needs to be switched on in preferences)
    • Performance improvements (details view rendering, combo boxes, name editor focus)
    • Bugs
      • rank selection did not work if ranks were sorted naturally
      • drag&drop for classifications in navigator disabled
      • exception when switching type of description element in details view
      • size of search field to small
      • multiple minor issues
  • Browser Editor (Vaadin)

    • Distribution editor fixed and improved (ready for use in production)
    • Name Registration
      • Rights&Roles for Registrations
      • RegistrationUI: Buttons only enabled if the user has according permissions
      • phycobankID links only active when status is PUBLISHED
      • minor bug fixes

# Subject Status
  cdm-dataportal 1 Collapse all/Expand all
6985 display Registration metadata in footnotes Closed Actions
  cdm-vaadin 9 Collapse all/Expand all
7053 TeamOrPersonField disabled state inconsistent Closed Actions
7046 replace open session per view pattern by DTO strategy Closed Actions
7028 make available distribution status configurable in vaadin distribution editor Closed Actions
7026 RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties Closed Actions
6999 RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity Closed Actions
6997 RegistrationUI: Show authenticated user in toolbar with option to logout Closed Actions
6995 Show phycobankIDs in Workingset editor Closed Actions
6994 phycobankID links only active when status is PUBLISHED Closed Actions
6802 Selection of distribution in Vaadin distribution editor does throw LIE Closed Actions
  cdmadapter 1 Collapse all/Expand all
6953 use taxonNodeOutStreamPartitioner in CdmLightExport Closed Actions
  cdmlib 4 Collapse all/Expand all
7027 GrantedAuthorityImpl.authority entities inconsistent Closed Actions
7021 CREATE permission not sufficient to save new TaxonName entity Resolved Actions
7018 implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase Closed Actions
7016 implement a CdmPermissionVoter for TypeDesignations Rejected Actions
  cdmlib-remote 1 Collapse all/Expand all
6987 LIE during name catalogue service call processing Closed Actions
  taxeditor 24 Collapse all/Expand all
7088 Media can not be saved in TaxEditor Closed Actions
7062 combo box for hierarchically sorted ranks select wrong terms Closed Actions
7056 Media View should show Preview Resolved Actions
7044 Migrate theme Closed Actions
7041 D&D for classifications should not be possible and corrupts data Closed Actions
7011 Migrate group authority editor Closed Actions
7006 Migrate preferences Closed Actions
7005 Migrate import wizards Closed Actions
7000 clicking in specimen details of bulk editor results in an empty details view Closed Actions
6998 Potential NPE with endless loop when switching type of description element in details view Closed Actions
6990 Migrate search result view Closed Actions
6989 Migrate concept graph view Closed Actions
6974 improve the io wizards Resolved Actions
6932 Migrate bulk editor Closed Actions
6924 Taxon name incorrect after swap synonym with accepted taxon Worksforme Actions
6921 Migrate data import views Closed Actions
6914 exception in bulk editor after search Closed Actions
6908 Migrate polytomous key module Closed Actions
6902 Migrate molecular module Closed Actions
6862 Supplemental data view is grey when editing images in specimen tree editor Worksforme Actions
6622 Migrate remaining main menu items Closed Actions
6595 Migrate name editor Closed Actions
6569 Remove unused application model from taxeditor.application Closed Actions
4155 Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree Closed Actions

CDM Platform 4.10 (released on Sept 15th, 2017)

Issues: 56

What's new?

  • General / Model

    • Allow recursive setting of publish flag (not yet available in TaxEditor)
    • Fix usage of country label in specimen title cache
  • Rights&Roles

    • Role group "Admin" as standard group to all CDM instances
    • Fix rights checking for editing of persons and teams
  • DataPortal

    • Fix selection of best matching image representation for profile picture and overlay images
    • Fix bug with links to synonyms in tabbed view with no explicit synonym tab
  • TaxEditor

    • New download site available
    • Eclipse3->Eclipse4 migration
      • Views: Details, Conceptrelations, Referencing objects, datasource, factual data, supplemental data, media
      • Editors: terms
    • Misapplication editing improved, also reusability of misapplied name taxa
    • Automated updating fixed
    • Export:
      • CDM light and DwC-A export for taxonomic subtrees (e.g. families, genus, ...)
      • Progress monitor for DwC-A export
      • DwC-A exports higher classification for each taxon
      • Fix DwC-A export not stored in selected file
    • Allow scientific name editing for bacterial, fungi, cultivar plants and undefined codes (non viral names)
    • Add Person, team and specimen cache updating
    • Specimen
      • Add Life-form to field unit and kind-of-unit, lifestage and sex to derived units (specimen)
    • Performance
      • Improve performance when first loading selection dialog for named area (still needs further improvement)
      • View refresh faster (still needs further improvement)
    • Bugs
      • Exception during drag&drop in taxon navigator
      • Editing Rights&Roles throws exception
      • Deleting media leads to inconsistent data
      • Move description to other taxon command fails in factual data view
      • Sorting of ranks not configurable anymore
      • Duplicate menu in search result view
      • Handling of with time zones for date time editing (image created, ...)
  • Documentation

    • Fix OAIPMH swagger documentation
  • Vaadin

    • Registration UI prototype

# Subject Status
  cdm-dataportal 5 Collapse all/Expand all
6969 Use media representation which best fits the available size for taxon profile picture Closed Actions
6959 Block to display Registration metadata Closed Actions
6877 links to synonyms not working when portal in tabbed mode without separate synonymy part/tab Closed Actions
6815 OriginalSource idNamespace + idInSource default separator should be whitespace Closed Actions
6684 Use media representation which best fits the available viewport size for the Image Overlay Closed Actions
  cdm-vaadin 5 Collapse all/Expand all
6855 TeamOrPersonField allows adding Persons and Team for users with unsufficient authorities Closed Actions
6852 GrantedAuthorities and permission Groups for Phycobank Closed Actions
6846 layout component sizing probelms in worflow view Closed Actions
6843 resize problems of Popup editors when clicking contained elements Closed Actions
6810 View for starting new registrations implemented Closed Actions
  cdmadapter 3 Collapse all/Expand all
6968 Unexpected error in CDM light when exporting Individuals Association with no unit attached Closed Actions
6933 Add possibility to export only families or other part of the tree in CDM light and DwC-A export Closed Actions
6880 Allow removing auditing from imports Closed Actions
  cdmlib 8 Collapse all/Expand all
6957 Implement cache strategy for viral names Closed Actions
6856 Add group Admin to standard FirstDataInserter Closed Actions
6851 Use country label instead of description in specimen cache strategy Closed Actions
6842 NPE in Registration constructor when name is null Closed Actions
6721 Show kindOfUnit, Sex and Lifestage also for DerivedUnits in DUFacade Closed Actions
6654 implement a CdmPermissionVoter for Registrations Closed Actions
6630 Unify TaxonName cache strategies Closed Actions
3740 Allow recursively setting the publish bit for TaxonBase Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
6964 Registration webservices implemented Closed Actions
6948 OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon Closed Actions
6836 Swagger documentation for OAIPMH broken Closed Actions
  documentation 1 Collapse all/Expand all
6812 Improve TaxEditor download site Closed Actions
  taxeditor 31 Collapse all/Expand all
6961 Drag&Drop for taxon nodes throws NPE when hovering Classification Closed Actions
6958 The description of the referencing objects view is missing in e4 Closed Actions
6949 The Media details view does not show the full image Closed Actions
6926 First call of NamedAreaSelectionDialog needs too much time Closed Actions
6923 move description to other taxon command fails in factual data view Closed Actions
6922 Migrate term editor Closed Actions
6919 Unprotected titleCache field is still grayed Closed Actions
6918 Rank is always sorted by label Closed Actions
6915 Delete does not work in media view for taxon Closed Actions
6912 Migrate datasources view Closed Actions
6911 Migrate concept view Closed Actions
6910 Migrate referencing objects view Closed Actions
6907 Migrate factual data view Closed Actions
6906 Migrate media view Closed Actions
6905 Migrate supplemental data view Closed Actions
6894 NPE when trying drag&drop a Classification to the GrantedAuthority editor Closed Actions
6875 Duplicate menu in search result view Closed Actions
6860 Use consistent calendar system for date picker Closed Actions
6828 SpecimenOrObservation and Person/Team missing in Cache updater Closed Actions
6809 Name Editor throws double selection change events Closed Actions
6801 DwCA Export is not stored at expected place Closed Actions
6799 Implement progress monitor for DwC A export Closed Actions
6797 Use short sec citation for misapplied name in NameEditor Resolved Actions
6789 Remaining issues for misapplied name details view Closed Actions
6781 Automatic update does not work anymore for TaxEditor Closed Actions
6730 Deleting media leads to inconsistent data Resolved Actions
6722 Make Life-form available via DerivedUnitFacade Closed Actions
6693 Implement missing nomenclatural codes for name detail element Closed Actions
6692 Make name types changeable Closed Actions
6597 Migrate Details View Closed Actions
6347 Improve layout for navigator sorttype selection Closed Actions

CDM Platform 4.9 (released on July 20th, 2017)

Issues: 21

What's new?

  • General / Model

    • Framework for csv imports implemented
  • DataPortal

    • In tabbed version it is now possible to show the synonymy on the general page
    • Feature block items "glue" is now configurable
    • Media:
      • image viewer uses best quality media representation now
      • "show captions under thumbnails" is now evaluated
      • "back to image" improved
    • Specimen table:
      • uses country label instead of full description (not yet fixed for titlecache, will come in 4.10)
      • collection date shows up now
      • label for specimen in collection simplified
      • preferred stable URI shows up as text, not only link
    • Bugs:
      • map did not show point data, when some specimen where not georeferenced
      • bounding box for maps did not work correctly
  • TaxEditor

    • Feature tree editor
      • allows drag&drop from term editor
      • uses context menu
    • Restore
      • restoring views after restart/reconnect works now on a per instance level when using multiple instances of the TaxEditor on the same computer, leading to less exceptions
    • Taxon Navigator
      • Linking taxa opened in NameEditor with taxa in navigator works now (was fixed in 4.8 but not mentioned there)
    • Experimental
      • Allow handling terms as "kind-of"
    • Bugs
      • details view for taxon relationships fixed
    • Logging
      • human readable labels for datasources when logging datasource issues
  • Vaadin

    • Generic MVP (Model View Presenter) framework with support for the CDM library

# Subject Status
  cdm-dataportal 10 Collapse all/Expand all
6837 Use country label instead of description for specimen table Closed Actions
6831 glue for feature block items configurable Closed Actions
6822 Media settings: "Show captions under thumbnails" has no effect on the Image Viewer Closed Actions
6820 Settings option to place the synonymy at the top of the general page and to supress the according tab. Closed Actions
6818 Default Image Viewer: setting to enable display of 'Media Representations' Closed Actions
6817 Media page: "Back to Image" only shown when the HTTP referrer is a cdm_dataportal page Closed Actions
6816 [Dataportal] Specimen table issues Closed Actions
6703 Improve title handling for media in dataportal Closed Actions
6683 Use best quality media representation in image viewer on media page Closed Actions
6608 Setting the 'Bounding box' for the OSM layer no longer works Closed Actions
  cdm-vaadin 1 Collapse all/Expand all
6687 Multiple representations of the same entity merge problem Closed Actions
  cdmadapter 2 Collapse all/Expand all
6793 Implement simple Csv import framework Resolved Actions
6286 Import Flora Hellenica Resolved Actions
  cdmlib 2 Collapse all/Expand all
6825 Specimen map shows point data only if ALL field units are georeferenced Closed Actions
6790 IO class hierarchie creates problems in IDE Closed Actions
  taxeditor 6 Collapse all/Expand all
6897 i18n Messages.java files are missing in the build version Closed Actions
6848 Add context menu option to add "kind of" term to TermEditor Closed Actions
6847 Change location of workbench.xmi to taxeditor installation folder Closed Actions
6808 New misapplied name details view destroyed old concept relationship details view Closed Actions
6787 NPE when opening Specimen Tree Editor Closed Actions
6421 Document workaround for user.home location problem in Windows Closed Actions

CDM Platform 4.8 (released on July 6th, 2017)

NOTES for TaxEditor users

  • The automated update via Help->Search for Updates does not seem to work for this version. Please download the TaxEditor from https://dev.e-taxonomy.eu/download/taxeditor/stable/ . Contact us if you encounter problems.
  • It may happen that the right click menu in the Specimen Tree Editor does not appear. In this case please delete the following file: {user}.cdmLibrary.metadata.plugins\org.eclipse.e4.workbench\workbench.xmi

What's new?

  • General / Model

    • Classes for name and type registration added
    • Unify taxon name class (will allow changing name types like changing a botanical name into a zoological name) and simplifies development
    • Person: initials added
    • Reference: type Website: accessed (date) field added
    • References: attributes added to allow usage sharing references by multiple instances
    • Remove unique index on rights (e.g. copyright) to make it reusable
    • Added "Exact Value" to statistical measures for quantitative data
    • Improved reporting for schema updates
  • DataPortal

    • Position of protologue icon moved directly behind nomenclatural reference (was behind status before, misleading because status can have its own reference)
    • Additional base maps for the map viewer: Stamen terrain, OpenTopoMap
    • In cases where images are available in multiple qualities the DataPortal now chooses the quality which is most appropriate for the current display situation.
  • Imports / Exports

    • DwC-A (Darwin Core Archive) export for taxa fixed, improved and available via webservices
    • Improved reporting for imports and exports
  • Vaadin Based Applications

    • MVP framework with popup editor support which integrates into the the spring framework
    • Prototype implementation of the Phycobank (registry for algal nomenclatural acts)
  • TaxEditor

    • Misapplications:
      • err. sec. references editable
      • improved formatting in name editor, especially for names having an author and a nom.ref., this allows better reusing of names
    • Person "initials" editable and used for better reference formatting (initials behind family name)
    • Feature Tree Editor: moved from preferences to main menu (together with term editor), and did some improvements
    • Website "accessed" editable and integrated in formatting
    • Media: "media created" editable
    • Specimen Tree Editor migrated to only use Eclipse4 functionality now (all other editors still use a compatibility layer component)
    • Markers set to true by default
    • Parser
      • Autonym hybirds parsable
    • Bugs:
      • Delete was not successful, but did not show an exception
      • Some menu items were duplicated
      • Incorrect user management when changing password
      • Setting of kind-of-unit for specimen
      • Restoring of views after restart or reconnect

# Subject Status
  cdm 19 Collapse all/Expand all
6717 Rename taxonNameBaseTitleCacheIndex and taxonNameBaseNameCacheIndex Closed Actions
6663 Add required attributes to Reference to include externally managed references Closed Actions
6661 Add initials to Person Closed Actions
6660 Remove unique index from Rights MN tables Closed Actions
6618 Add link to Structure, Property, Method(?) and Type(?) Closed Actions
6617 Add "Exact Value" to StatisticalMeasure Closed Actions
6535 MetaDataPropertyName from number to string in DB Closed Actions
6529 Extend WorkingSet to allow a more fine grained definiton of taxon set Closed Actions
6472 Include keys as target for IntextReferences Closed Actions
6368 Merge all TaxonNameBase classes, remove DTYPE, rename table Closed Actions
6367 Make NomenclaturalCode an attribute ("type") of TaxonNameBase Closed Actions
6361 [MASTER] Merge all TaxonName classes into 1 class Closed Actions
6340 Update script for nomenclatural status types Closed Actions
6258 Add Registration to cdm model Closed Actions
5817 Rename RelationshipTermBase_inverseRepresentation Closed Actions
5258 Accessed field for WebPages Closed Actions
5149 Remove UNIQUE index on Sequence_Reference.citations_id column Closed Actions
3734 Stop separating term and schema update Closed Actions
2949 Simplify TaxonName classes Duplicate Actions
  cdm-dataportal 4 Collapse all/Expand all
6702 Post release 4.8.0 tasks Rejected Actions
6700 Adapt dataportal to TaxonName model changes Closed Actions
6653 add more base maps to the data portal Closed Actions
6651 the protologue icon should be shown directly after the nomenclatural reference Closed Actions
  cdm-vaadin 5 Collapse all/Expand all
6759 better theming of the on/off SwitchButton which is used in SwitchableTextField component Closed Actions
6758 remove Registration type icons Closed Actions
6724 Popup Editor for SpecimenTypeDesignation Workingsets Closed Actions
6719 Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit Closed Actions
6673 conceptual problems with vaadin Popup editor presenters (AbstractEditorPresenter) Closed Actions
  cdmadapter 1 Collapse all/Expand all
6754 Adapt DwcA Export to CDM light export strategy Closed Actions
  cdmlib 12 Collapse all/Expand all
6750 DerivedUnitConverter which can convert DerivedUnits <--> MediaSpecimen Closed Actions
6725 Bug in DU facade for setting / retrieving kind of unit Closed Actions
6689 Implement SchemaUpdateResult instead of boolean Resolved Actions
6671 Remove generics from TaxonName Closed Actions
6662 Adapt person formatting, set initials behind lastname Closed Actions
6656 Make autonym hybrids parsable Closed Actions
6612 Implement dao and service class for Registrations Closed Actions
6548 NPE in DeduplicationHelper Closed Actions
6504 Bibliographic references should not start with firstname. Closed Actions
6240 maven javadoc plugin fails with java 1.8 Closed Actions
6138 fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest Closed Actions
3665 Further implementation of original spelling name caching Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
6755 Make DwcA export available for annosys via web services Closed Actions
6502 LIE during request to portal/classification/{uuid}/pathFrom/{taxonNodeUUID}/toRa nk/{rankUuid} Closed Actions
  data 1 Collapse all/Expand all
6226 Delete orphaned key nodes Closed Actions
  taxeditor 27 Collapse all/Expand all
6795 Invoke selection change event when setting focus to specimen editor Closed Actions
6785 Editors should be able to have multiple instances Closed Actions
6783 Menu item for editing right is missing Closed Actions
6776 Restored Specimen Editor does not load conversation => NPE Closed Actions
6773 Changing pwd as admin changes the user Closed Actions
6749 No media is created for new mediaSpecimen Closed Actions
6748 Linking between derivate view and facts/media view Closed Actions
6747 Media and Facts view is inactive for specimen editor Closed Actions
6743 Translation missing for Specimen-Editor context menu Closed Actions
6733 NPE when trying to open Derivative Editor Closed Actions
6726 NPE in FactualDataView and feature selection does not show any entries in Factual Data View Closed Actions
6711 Make initials editable in TaxEditor Closed Actions
6694 Migrate FeatureTreeEditor Closed Actions
6681 Correct formatting for misapplied names in name editor Closed Actions
6669 Duplicate menu items in several views and editor Closed Actions
6666 Exception in SearchResultView when starting the Taxeditor Closed Actions
6664 Deleting often does not succeed without throwing an exception Closed Actions
6658 Make mediaCreated editable in Media view Closed Actions
6607 Implement WebSite.accessed in TaxEditor Closed Actions
6596 Migrate specimen editor Closed Actions
6527 Refactor delete configurator for media Closed Actions
6473 Marker by default should be true Closed Actions
6446 Merge botanical and zoological names into TaxonNameBase in external applications Closed Actions
6445 Remove occurrence of NonViralName in external applications (TaxEditor etc.) Closed Actions
6418 Status line does not update after completing the update of the referencing objects view Worksforme Actions
6390 Details view for misapplied names Closed Actions
3866 Link Taxon Editor name to the taxon in the taxon navigator Closed Actions

CDM Platform 4.7 (released on May 16th, 2017)

What's new?

  • General / Model

    • The main change in Version 4.7 is the upgrade of the TaxEditor from Eclipse 3.7 to Eclipse 4.6 (Neon). This upgrade will ease development in future. To make the TaxEditor running under e4.6 several adaptations had to be made.
      • IMPORTANT: Due to the upgrade it might happen that during the first opening an error shows up. If this happens CLOSE and REOPEN the editor.
      • IMPORTANT: Due to the upgrade the default update mechanism for the TaxEditor will not work. Instead you need to install it from scratch (download from https://dev.e-taxonomy.eu/download/taxeditor/stable/ and unzip into any folder).
    • A new import and export framework has been established. It is meant for more feedback and reporting during the imports. Currently it is used only experimentally for the new "Excel Distribution Update" import (experimental feature), and partly for the new "CDM light (csv)" export (also experimental in the current state).
    • New identifier types for botanical names added: IPNI, Tropicos, WFO (World Flora Online)
    • Improved handling of hybrids
    • Automatic basionym recognition (not yet available in TaxEditor)
  • DataPortal

    • Allow multiple layers in maps (option to define a wms overlay layer for the openlayers map viewer)
    • Bugfix for fast moving maps while padding
  • Imports / Exports

    • Improved Import- and Export framework for better report resulting (existing imports/exports still need to be adapted to the new framework)
    • New: "CDM light (csv)" export - a CSV export that exports all CDM data for a single classification in csv format
    • New: RIS Reference import - e.g. to import reference data from Endnote via RIS format (still experimental, some attributes are not yet handled)
    • New: "Excel Distribution Update" added (still experimental, please contact us, if you want to use it)
    • New: Multilingual Term Representation import (not yet available in TaxEditor)
    • New: Identifier import (not yet available in TaxEditor)
    • Updated: ABCD Import
      • possibility to import all siblings of a specimen derived from a culture.
      • better handling of media data, identifications, gathering events
  • TaxEditor

    • Upgrade to Eclipse 4.6
    • Improved Parser
    • Parse "sp. nov." and similar names
    • Improved handling for original spellings (further improvements needed)
    • Prefill nomenclatural reference selection dialog if taxon name author is given
    • Selected items removed from selection dialog
    • Server-side preference for frequently used biocase providers added (ABCD import)
    • Improved search behavior in Specimen Hierarchy Editor
    • Some improvements for the Alignement Editor integration
    • Rank list for create new name in bulk editor sorted
    • Improvements for specimen search/import:
      • better parsing of results to display scientific name, collection etc
      • add possibility to configure the import in result view
      • possibility to set the name of the import reference
    • Bug fixes:
      • Delete synonyms in Name Editor with supplemental data attached
      • Delete synonyms in bulk editor
      • Exception when switching to simple name details view
      • Empty reference dialog after changing reference type
      • Incorrect data when editing a new nomenclatural reference for a new name
      • Exception ("multiple representations") when adding name relationships
  • Vaadin Applications