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CDM Platform 5.12 (scheduled for Dec 4th, 2019)

Issues: 154

What will be new?

Downloads:(not yet available) TaxEditor, CDM Server, Data Portal

CDM Platform 5.11 (scheduled for Nov 14th, 2019)

Issues: 38

What will be new?

  • Data Model

    • Added count parameter for statics during data aggregation of categorical (structured descriptive) data
    • Added ORCID identifier to persons
    • Added CDM source links (sources may link to other information in the same CDM instance)
  • Data Portal

    • Fixed polytomous key display for key parts linked from multiple places
    • Fix label formatting for specimen with missing collection identifier in specimen tables
    • Fixing problem with names having multiple nomenclatural status
  • Import/Export

    • ABCD:
      • Fix collector and field number handling for derived units missing this data (but available in field unit record)
  • CDM Library

    • Better parsing for infrageneric autonyms with authors
    • Imporved distribution and descriptive data aggregation
  • CDM Server

    • Fix memory leaks
  • TaxEditor

    • Taxon search: new filter to search only for published taxa
    • Terms:
      • Tree editor for Named Areas, Ranks and Distribution Status available (to define user defined term collections and orders, including cross-vocabulary collections) - usage of such collections will be implemented in future releases
    • Taxon/Name details view
      • Nomenclatural code edition editable for rule considered (nomenclatural status and name relationships)
      • Rule considered and nomenclatural code editon visibility configurable (serverside and local)
      • Minor changes in ordering of misapplied name details view
    • Person details view
      • ORCID editable
    • Taxon navigator:
      • Taxon node doubtful flag editable via context menu
      • Rename view to "Taxon Navigator" (regression in one of the last releases)
      • Refresh problem after editing classfication label or adding child taxon to classification
      • Rename open-in for Taxon Node (Wizard) to ... Dialogue
      • Reorder and rename import menu (items)
    • Import/Export:
      • Multiple fixes for file based ABCD import
      • Fix for DwC-A export
    • Factual Data View
      • Visibility of "modifier" and "modifying text" is configurable now
    • Distribution Editor
      • Default source also used when creating an additional source for an existing source
    • User administration
      • Better error handling for user and group names with not allowed characters

# Subject Status
  cdm 4 Collapse all/Expand all
8466 Delete FeatureTree tables Closed
8625 Add count parameter to StateData Closed
8628 Add ORCID as person identifier Closed
8673 Allow OriginalSource to link to other CDM objects Closed
  cdm-dataportal 3 Collapse all/Expand all
8596 Add a list of descriptions to the taxon page Closed
8610 tagged_text_extract_nomstatus() fails handling more than one status Closed
8622 Missing specimen Identifier leads to empty brackets in portal Closed
  cdmadapter 2 Collapse all/Expand all
8533 missing collector and fieldnumber in abcd import Closed
8632 ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration Closed
  cdmlib 3 Collapse all/Expand all
8253 Authors for genus autonyms Closed
8651 Unify description aggregation methods (distribution and structured descriptive data) Closed
8676 TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship Closed
  cdmlib-remote 1 Collapse all/Expand all
8570 PolytomousKeyNode.otherNode missing in REST service response Closed
  cdmserver 2 Collapse all/Expand all
5048 cdm-server causes unusual high native memory consumption for jvm Closed
8674 configure cdm-server docker image to run with jemalloc Closed
  taxeditor 23 Collapse all/Expand all
7019 sort import menu Closed
7143 Finish not enabled when unprotecting titleCache in new Person dialog Closed
7457 E+M: Allow filtering for only published in search Closed
8226 make modifiers for description elements configurable Closed
8410 Add nomenclatural code edition to ruleConsidered in TaxEditor Closed
8470 Handle username constraints in user and group editing Closed
8486 Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu Closed
8568 improve performance for term and vocabulary preference pages Closed
8572 Rule considered configurable Closed
8581 Naming inconsitency: Taxon Navigator or Taxonomic Tree? Closed
8582 Taxon Navigator: Classification label not refreshed & new taxa not visible Closed
8584 Appended phrase should be shown on top level for misapplied names Closed
8609 Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard Closed
8613 For distribution editor default reference should be used also when new source is created Closed
8630 ClassCastException when ABCD import has finished Closed
8631 ABCD import fails to put new taxa into the classification, create mediaspecimens, etc Closed
8634 NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import Closed
8642 Add tree editor for rank, NamedArea and PresenceAbsence Closed
8648 Simplify name details view configuration Closed
8652 disentangle confusion when connecting to development cdm instance fails Closed
8664 SQLGrammarException when opening Specimen selection Closed
8667 Make Person.orcid editable in TaxEditor Closed
8685 Exception when calling DwC-A Export Closed

Downloads:(not yet available) TaxEditor, CDM Server, Data Portal

CDM Platform 5.10 (released Sep 23rd, 2019)

Issues: 29

What's new?

  • Data Portal

    • Taxon section in name page can be suppressed via settings.
    • Bug fix of a regression related to the display of DOIs and publication reference links.
  • Import/Export

    • CDM light export:
      • type designation export differs between textual and specimen type designation
    • Biocase search:
      • add possibility to search for Higher Taxon
  • CDM Library

    • Bugfixes and code maintenance
      • Providing the default user role USER_MANAGER to all databases.
  • TaxEditor

    • Bugfix for swap taxon and synonym
    • Further improvements to preference handling
    • Search dialogue for distribution areas works with abbreviations
    • Old taxeditor documentation made available.
  • Web editor (Phycobank registration UI)

    • Name relations and nomencaltural status now offering fields to mention the nomenclatural code edition.
    • Layout and user experience (UX) issues in the UI have been solved (#8014, #8342, #8377).
    • Fixing important bug to prevent data loss and corruption (#8462, #8527)

# Subject Status
  cdm-dataportal 3 Collapse all/Expand all
8504 Name page: allow hiding the Taxon section via settings Closed
8565 external links and dois no longer showing up Closed
8594 registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern Closed
  cdm-vaadin 8 Collapse all/Expand all
8014 Label wording im UI Name Editor Closed
8342 shift field Field number Closed
8376 RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered Closed
8377 TypeDesignationsEditors: Delete must not be allowe before the workingset is saved Closed
8408 add nomenclatural code select to NomenclaturalStatusRow Closed
8409 add nomenclatural code select to NameRelationField Closed
8462 NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext() Closed
8527 TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time Closed
  cdmlib 6 Collapse all/Expand all
8425 FieldUnitDTO: remove taxonRelatedDerivedUnits Closed
8456 FieldUnitDTO: remove newInstanceMethod Closed
8505 ConfigFileUtil: turn all spring bean methods into not statical methods. Closed
8513 CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator() Closed
8517 SpecimenOrObservation: data from protected titleCache missig in portal pages Feedback
8519 ROLE_USER_MANAGER missing in FirstDataInserter Closed
  cdmlib-remote 1 Collapse all/Expand all
8538 add text_l10n for TextualTypeDesignation.text to web service respones Closed
  taxeditor 11 Collapse all/Expand all
7321 multi-language textfields should not show empty text when there is text Closed
8034 Recently used references shows all references Closed
8092 set default for term and vocabulary selection preferences in selection wizard Closed
8123 Make available features a DB preference Closed
8335 Store character matrix table state as DB preference Closed
8350 Search dialog for named areas should work with abbreviations Closed
8382 Local Supplemental Data Source Preferences should reflect the state of admin preferences Closed
8386 Disable admin menu when not logged into a DB Closed
8488 Characters can not be added to feature trees Closed
8539 Add IndividualsAssociation when adding specimens to the character matrix Closed
8564 Link to PlatformDocumentation wiki page Closed

Downloads: TaxEditor, CDM Server, Data Portal

CDM Platform 5.9 (released Aug 29th, 2019)

Issues: 51

What's new?

  • Data Model

    • Term structure improved to allow all types of relations between terms and to allow vocabulary independent term collections/graphs (partly implemented in TaxEditor)
    • Add state vocabulary for presence/absence of a biological structure
    • Improve structure for inapplicableIf handling in character trees used for descriptive data matrices/datasets and for indentification keys
    • Improve authority handling in data model (preparation only)
    • Allow certain patterns only as usernames (Latin letters, numbers, '_', '.' are allowed)
    • Doubtful (placement) flag for taxon nodes
    • List of nomenclatural code editions (e.g. Melbourne Code) additional to rule considered in nomenclatural status, name relationship and hybrid relationship
    • Fields added to allow externally managed terms and vocabularies (not yet in TaxEditor)
    • Fields for textual/verbatim type designation information
    • Possibility to add fixed markers/types to a description (e.g. to mark a description as a computed/aggregated description which should not be editable)
  • Data Portal

    • Adapted to term structure changes in the data model.
    • Improved ordering of type designations in the name and taxon pages.
    • Harmonization and improvement of the specimen display in various parts of the portal, including better intra portal linking.
    • Performance improvement regarding to type designations.
    • Auto-zooming of maps has been fixed for different map projections.
    • Improved layout of the registration page to clearly show the nomenclatural act.
    • Classification tree horizontally automatically scrolls to active entry.
  • Import/Export

    • CDM light export:
      • add textual/verbatim type designations
      • some minor adaptations
  • CDM Library

    • Fix and improve polytomous key generation (to be used from descriptive data set, experimental feature)
    • Multiple improvements and bug fixes to web services
  • TaxEditor

    • Add textual/verbatim type designations to details view
    • Use feature states for applicability of term nodes
    • Improvement and harmonization of serverside and local preferences
    • Update name in source data when changing an accepted taxon into a synonym (configurable)
    • Allow setPublish for subtree to include misapplied names, pro parte synonyms and exclude hybrids
    • Seperate term tree editor for each term type available
    • Warning if misapplied names or pro parte synonyms are used/linked from more then 1 other taxon.
    • Bugs.
      • fixed term order of term trees

# Subject Status
  cdm 12 Collapse all/Expand all
3972 Strictly validate username to not null and not empty Closed
4884 Update Reference_AUD.refType to allow NULL Closed
7099 Make CdmAuthority a persistable class Resolved
7470 Verbatim type designation information Closed
7957 Add types for taxon description (as EnumSet) Closed
8180 Add property term "Presence/Absence" to CDM default terms Closed
8281 Doubtful flag for TaxonNode Resolved
8398 Add nomenclatural code edition to ruleConsidered Closed
8429 Rename DeterminationEvent_Reference.setOfReferences_id Resolved
8441 Add FeatureState class Resolved
8442 Add fields to handle external terms to DefinedTermBase or TermBase Closed
8454 Only allow certain patterns as username and groupname Closed
  cdm-dataportal 11 Collapse all/Expand all
8166 Adapt dataportal to term structure changes Closed
8402 ordering typedesignations in name and taxon page Closed
8406 specimens and occurrence code cleaning and harmonization Closed
8415 use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval Closed
8418 specimens and occurrence links must not have a target=_blank attribute Closed
8430 maps zoom to wrong bbox with some layers Closed
8440 specimen accession numbers link to specimen page Closed
8448 Maps settings > Bounding box inconsistent Closed
8449 improve layout of registration page to clearly show the nomencaltural act Closed
8495 classification tree horizontally scrolls to active entrty Closed
8502 taxa with doubtful flag lack proper formatting Resolved
  cdmlib 8 Collapse all/Expand all
3472 Update name in source data when changing an accepted taxon into a synonym Closed
7450 Allow setPublish for subtree to include misapplied names and pro parte synonyms Closed
8404 Add update step list within updaters Closed
8422 Make PolytomousKeyGenerator work (correctly) Closed
8426 IndexOutOfBoundsException during serialization of RegistrationWorkingSet Closed
8437 ITermTreeService provides a list method which supports filtering by TermTree.termType, Resolved
8446 Allow setPublish for subtree to filter for hybrids Closed
8482 java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151) Closed
  cdmlib-remote 5 Collapse all/Expand all
8390 implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup Closed
8395 NullPointerException (NPE) in NameCatalogueController Closed
8414 occurrence controller code cleaning and harmonization Closed
8434 Change FeatureTree contollers to TermTree controllers Closed
8436 featureTree/* services should filter the termTrees by the TermType Feature Closed
  taxeditor 15 Collapse all/Expand all
7597 Aggregate and persist descriptions on taxon level Closed
8135 Implement verbatim type information in TaxEditor Closed
8235 Create separate menu for term tree editors for each term tree type Closed
8282 Implement placementDoubtful in TaxEditor Closed
8334 Move sources for type designations to details view Closed
8385 Open issues in DB preferences Feedback
8389 Correct handling of default values with allowOverride=false Resolved
8444 Show warning if misapplied names / pro parte synonyms are used more then once Closed
8447 Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids Closed
8465 Term nodes order in term trees is ignored in term tree editor Closed
8475 Adapt applicable state detail view elements to FeatureState Closed
8480 Use DescriptionTypes for matrix descriptions Closed
8485 Add column groups to character matrix Closed
8526 Swap synonym with accepted taxon does not work Resolved
8532 common name language selection is not selected Resolved

Downloads: TaxEditor, CDM Server, Data Portal

CDM Platform 5.8 (released on Jul 19th, 2019)

Issues: 69

What's new?

  • Data Portal

    • cm added as measurment unit
  • Data Portal

    • Improvements to the media page related to source references and the media title
    • Name page shows more information: name relations, type designation with specimen map, related taxa, nomenclatural acts (registrations)
      • The automatic redirect behavior to the taxon page is now configurable
    • Registration search:
      • Support for filtering by references
      • Improved search by type designation status and name
    • Registration page:
      • Subheadline to show the type of the nomenclatural event
    • General layout improvements
      • Links to reference pages as unobtrusive icon link
    • Maps:
    • User interface to search the Unified Taxonomic Information Service (UTIS)
    • Bugfixes related to
      • Name relations
      • Nomenclatural status
      • Type designations
  • CDM Server

    • improved error detection when failing to start
  • TaxEditor

    • improved deduplication for references in name editor (hotfix 5.7.3)
    • handling of preferences improved
      • consistent model to always allow default and specific values and to handle override more intuitive
      • area specific status list preferences for distribution data
      • status list serverside preferences for distribution data handled in details view
      • ranks as serverside preferences
      • nomenclatural status as serverside preferences
      • visibility of fields Source.idInSource and Source.IdNamespace as preferences
    • CDMlight export
      • includes excluded flag and excluded notes
      • sortindex for taxa added
      • improvements in ABCD import
    • Terms allow adding media in term editor
    • Media:

      • media loaded asynchronously to improve performance (has open issues)
    • Bugs

      • exception/freezing when opening name in source search dialogue (hotfix 5.7.3)
      • recognize again the previous state (opened sections) of details view and supplemental data view (hotfix 5.7.3)
      • refresh in name bulk editor after search (hotfix 5.7.3)
  • Web editor (Phycobank registration UI)

    • Registration list view with reference filter
    • Curators and admins can edit arbitrary Annotations (Notes)
    • Bugfixes related to
      • user permissions
      • ...

# Subject Status
  cdm 1 Collapse all/Expand all
8286 Add cm as unit term to CDM Closed
  cdm-dataportal 26 Collapse all/Expand all
4177 display of name relationships in synonymy broken Closed
5855 potential improvements in settings for name relationship types Closed
5857 show nomenclatural status for for representations of TaxonName Closed
6316 display source references of media objects in media page Closed
6380 typedesignations missing in homotypic group Closed
6709 Do not show UUID on media page Closed
7620 RegistrationSearch implemented with Reference filter Closed
7966 Registration search simplify type select options Closed
7975 Implement a block to display name relations Feedback
8016 Registration page: subheadline with event type Closed
8108 Name page shows complete name information (I) Resolved
8182 show blast search result In Progress
8245 Improve representation of DescriptionElementBase.timeperiod Closed
8280 polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder Closed
8304 Name page redirects to according taxon depending on query parameter Feedback
8306 Registration page links to registered taxon name Closed
8318 TaxonName processing for taggedFullTitle Closed
8320 Links to reference page as appendend icon instead of having the whole citation as link Closed
8321 Namepage shows wrong taxa as related to the name Closed
8347 point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc. Closed
8351 name page: show type designations with map Closed
8352 name page: show nomenclatorical acts Closed
8366 Same typedesignation display for registration page as in name page Closed
8368 problems in compose_cdm_specimen_or_observation_tree_entry() Closed
8370 feature blocks created by compose_description_element_individuals_association() are broken Closed
8388 UTIS search block Closed
  cdm-vaadin 6 Collapse all/Expand all
8167 Permission denied for Submitter when adding section to newly created journal New
8278 LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator Closed
8279 ClassCastException in CdmUserHelper.user() Closed
8284 starting a registration for an existing name causes the name editor to pop up in read only mode Closed
8345 RegistrationListView: filter option for publication Closed
8346 Curators and admins can edit arbitrary Annotations (Notes) Closed
  cdmadapter 5 Collapse all/Expand all
6627 Remaining cdm light issues Resolved
8264 excluded and excluded notes in cdmlight export Closed
8273 abcd import: check for all specimen for DNA in DNABank Feedback
8322 add sortindex to cdm light export Resolved
8344 cdm light export: add dummy line in simpla facts table Feedback
  cdmlib 14 Collapse all/Expand all
7296 externalize redmine api key Closed
7433 new service method to get specimen by genetic AccessionNumber Resolved
7829 Improve deduplication of parsed names and references In Progress
7902 Allow default values for PreferencePredicates In Progress
7904 DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected. Feedback
7932 Implement subject resolver for CdmPreferences In Progress
8062 Make default preferences deletable serverside In Progress
8257 Remove factory methods for term node creation Closed
8287 RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed Closed
8314 TaxonName provides the FullTitleCache as TaggedText Closed
8330 RegistrationDao search method Closed
8354 taxonomic registration search by name finds also typifications for this name Closed
8365 DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers Closed
8369 SpecimenTypeDesignationDTO can not be serialized to JSON Closed
  cdmlib-remote 2 Collapse all/Expand all
7621 registration search also covers typified names Closed
8319 NomenclaturalStatus webservice implemented Closed
  cdmserver 1 Collapse all/Expand all
5774 cdmserver misses to detect some errors in failed instances Closed
  taxeditor 14 Collapse all/Expand all
7920 Possibility to define area specific status selection Feedback
8045 Improve handling of default values and override in local preferences Feedback
8058 Further issues for (local) preferences Feedback
8088 Open taxon node wizard issues Feedback
8129 Load images asynchronously in media details view Feedback
8256 Show all status preferences as table Feedback
8260 Details and Supplemental Data View do not save the expansion state of sections Closed
8283 Allow adding media to terms in taxeditor Closed
8293 Distribution preferences for details view should be serverside preferences Feedback
8294 Make display of ID in source and ID Namespace configurable Closed
8313 Multiple categorical data get deleted when clicked on in Character Matrix Closed
8323 Make nom.status and rank lists a CdmPreference Feedback
8332 Excel matrix exports only the visible rows Closed
8333 Show modifiers for states in Character Matrix Closed

Downloads: TaxEditor, CDM Server, Data Portal

CDM Platform 5.7 (released on May 6th, 2019)

Issues: 21

What's new?

  • Data Portal

    • Bugfix for setting the feature tree for the general page
  • TaxEditor

    • some urgent bugfixes for character matrix editing
    • possibility to define area specific distribution status for distribution editor (UI for setting this preference is still missing)
    • some bugfixes
  • Web editor (Phycobank registration UI)

    • All comboboxes for references are making use of the ellypsed reference labels
    • The TaxonNamePopeditor now supports editing the nomenclatural status
    • Name type status filter in registration search simplified
    • and some bugfixes

# Subject Status
  cdm-vaadin 8 Collapse all/Expand all
7965 Registration search simplify type select options Closed
8193 TaxonNamePopupEditor: add select form element for Nomenclatural status Closed
8209 use ellypsed references for all reference comboboxes Resolved
8215 User demand: sorting order in reference editor Closed
8220 incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference Closed
8246 TaxonNamePopupEditor can not be canceled Closed
8250 ReferenceEditor: inReference must not be required for type book Closed
8252 reference ellypsis must not be applied to all reference types Closed
  cdmlib 2 Collapse all/Expand all
7953 Book in BookSeries: incomplete titleCache misses series title Feedback
8189 Allow configuration of 'user.home' via the spring environment Closed
  cdmlib-remote 1 Collapse all/Expand all
8251 LazyInitializationException (LIE) in featureTree webservice Closed
  taxeditor 10 Collapse all/Expand all
8229 reload of the bulkeditor does not work correctly Closed
8241 Rename FeatureTreeEditor to TermTreeEditor Closed
8258 Default Feature Tree contains name features and features Closed
8263 Improve performance of term editor Resolved
8265 Referencing objects view does not work for term editor Closed
8266 local preference is not evaluated for distribution editor status Closed
8267 common name preference saving does not work correctly Closed
8315 Parsing existing references with inReferences changes the inReference Closed
8316 Endless loop when editing name in source of distribution Feedback
8349 NPE in ParseHandler when parsing name without nomencl reference Closed

Downloads: TaxEditor, CDM Server, Data Portal

CDM Platform 5.6 (released on Apr 12th, 2019)

Issues: 67

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • Data Model

    • feature trees have been refactored to typified Term trees which support any type of terms
    • added term types to term vocabularies
    • added structure, property and regional modifier as new term types
  • Data Portal

    • added time period for description elements in data portals
    • improve user profile settigs in cdm_dataportal
    • harmonize registrationId links and make testing easier
    • improve image gallery settings labeling
  • Import/Export

    • name facts added to cdm light export
  • TaxEditor

    • term editor
      • add "plural" to representations
      • new term editor for structures, properties, regional modifers
    • feature/term tree editor
      • feature trees became more generic and support all types of terms (not yet fully available in editor)
      • restrict editor according to typified term trees
    • name editor
      • creating duplicates of specimen type designations
    • update of open data after updating subtree operations (update publish flag and update sec reference)
    • user selection dialogs for group members filter out already added users
    • name facts now editable, when selecting name in details view and in name bulk editor
    • sources can be added to type designations
    • Bugs
      • changing of title cache of a factual data set was not possible
      • selection dialogs for teams or persons did not filter out institutes
      • insufficient rights lead to missing focus in name editor
      • fixed title cache issues for taxon descriptions
  • Web editor (Phycobank registration UI)

    • User friendly message when accessing editors with unsufficient permissions (#8218)
    • Registry curator can unlock a published registration for minor changes (#8192)
    • Solving a major performance problem related to uninomial und specific epithet comboboxes (#8176)
    • Better lables for popup editors breadcrumbs (#7962)
    • ReferenceEditor: optional validation for completenes of Partial values in datePublished (#7968)
    • Create blocking relations for un-registered names which are to be used in nomenclatural acts (#8050)
    • TaxonNamePopEditor: name part field visibility not correct for all ranks (#7963)
    • ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL (#8149)
    • ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked (#8191)
    • Bugfixes:
      • Fixing enabled state of edit buttons in combobox widgets (#8217)
      • Solving multiple problems related to problems with hibernate session an transaction handling
      • Problem with inserting a section - inReference is "lost" (#8097)
      • Error saving name type designation editor due to problem in poupeditor context (#8099)

# Subject Status
  cdm 2 Collapse all/Expand all
8162 Move term related classes from model.common to model.term Closed
8190 Default FeatureTree throws exception Closed
  cdm-dataportal 5 Collapse all/Expand all
3616 Show DescriptionElementBase.timeperiod in Dataportals Closed
3747 Check if time period is handled correctly for description elements in data portals Closed
5699 user profile settigs in cdm_dataportal module done wrong Closed
8093 harmonize registrationId links and make tesing easier Closed
8106 improve image gallery settings labeling Closed
  cdm-vaadin 23 Collapse all/Expand all
7881 reference selection combobox broken after error in ... Closed
7962 PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels Closed
7963 TaxonNamePopEditor: name part field visibility not correct for all ranks Closed
7968 ReferenceEditor: optional validation for completenes of Partial values in datePublished Closed
8050 Create blocking registrations for un-registered names which are to be used in nomenclatural acts Closed
8065 HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table Closed
8075 multiple cascase all-delete-orphan exceptions related to DefinedTermBase.representations Closed
8097 Problem with inserting a section - inReference is "lost" Closed
8099 Error saving name type designation editor due to problem in poupeditor context Closed
8107 NPE when throwing PopupEditorException in AbstractPopupEditor Closed
8149 ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL Closed
8158 cascade="all-delete-orphan" problem when .... Closed
8160 CdmBeanItemContainerFactory as readonly service bean Closed
8176 WeaklyRelatedEntityCombobox is slow Closed
8184 SpecimenTypedesignationEditor: add new specimen broken Chrome browser Closed
8188 Allow configuring hibernate properties via properties file Closed
8191 ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked Closed
8192 The curator must be able to unlock a published registration for edition Closed
8194 LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name Closed
8213 MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart Closed
8214 WeaklyRelatedEntityCombobox is not validated Closed
8217 ToManyRelatedEntitiesComboboxSelect edit button not enabled Closed
8218 Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions Closed
  cdmadapter 1 Collapse all/Expand all
8175 add name facts to cdm light export Closed
  cdmlib 6 Collapse all/Expand all
615 remove suns repository Closed
7106 avoid factory.openSession() in CdmRepository Closed
7896 NPE, NullPointerException in RelationshipTermBase Closed
8104 TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart Closed
8153 Adapt cdmlib to FeatureNode/FeatureTree model changes Closed
8171 javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed Closed
  cdmlib-remote 2 Collapse all/Expand all
8096 Implement CacheUpdater as long running task with correct progress monitoring Closed
8173 spring profile remoting enabled by default Closed
  taxeditor 28 Collapse all/Expand all
3836 Implement modifiers and modifying text for Description Elements in TaxEditor Resolved
4545 Implement TeamOrPersonBaseSelectionDialog Closed
6413 [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name Closed
7428 Open issues for updating open data while subtree is updated Closed
7515 TypeDesignationStatusComparator to sort by vocabulary first and then by term order Resolved
7541 Insufficient rights lead to missing focus in name editor Closed
7865 Remaining factual data view label issues Resolved
7923 Add context menu and drag'n'drop to CharacterEditor Closed
8011 Implement term search view Closed
8111 User selection dialog for groups does not filter out existing users Closed
8115 NPE when moving factual data Closed
8121 Allow selecting structural/property modifiers when creating a character Closed
8124 Activate Name Facts in Taxeditor Closed
8136 Implement sources for type designations in TaxEditor Closed
8143 It is possible to open multiple instances of the login dialog Closed
8146 Adapt taxeditor UI to structure and property term type Closed
8147 Add "plural" to representation detail element Closed
8148 Login Dialog cuts off information Closed
8150 Allow editing the representation label of characters in details view Closed
8151 after creating a new synonym and pasting a name string the default string is not removed Closed
8197 Deleting Media from Image Gallery View does not make view dirty Closed
8200 Changing title(cache) for factual data set not possible Closed
8211 Trigger new search when clicking on identifier search Closed
8222 Deleting a type designation from a name is directly persisted Closed
8223 Urgent TaxonNode wizard issues Resolved
8225 Deleting one of two type designations removes both Closed
8228 refresh of details for same object in different bulk editors does not work Closed
8234 Move description elements issues Closed

CDM Platform 5.5 (released on Feb 14th, 2019)

Issues: 123

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • Data Model

    • removed/added some attributes from certain attribute types (e.g. removed date published and authorship from journals and print series, added ISBN to Proceedings)
  • CDM Server

    • Available as docker container
  • Import/Export

    • taxon (tree)index added to CDMlight export
  • Dataportal

    • improved registration page, now showing the complete nomenclatural act data and registration metadata
      • human feedback to users in case a registration is not public or does not exist
    • improved diplay of type designations
    • improved display of registrations in lists like in search results and reference page
    • reference page shows name relations
    • details page for field units improved
    • some bugs fixed
  • TaxEditor

    • Distribution editor
      • use new table frame work (so called NAT tables), offering improved usabilty and functionality like filtering, column freezing etc
      • improved area selection dialog
      • bug fixes
    • Preferences
      • new menu structure for local preferences (not fully completed yet)
      • serverside preferences and local preferenced unsing same user interface pages
      • translation to German completed
      • improved handling of "(allow) override" functionality
      • improved handling of default values
      • (the last 2 will be further developed into 1 system with one of the next releases)
    • References
      • DOI available as attribute
      • warning for multiple usage of references also in details view (not only in editing dialog)
      • improved attribute selection for specific reference types (see data model section above)
    • Rights&Roles
      • Role "remoting" added, only users belonging to a group with role remoting are allowed to open data in TaxEditor
    • Term editor
      • performance improved
      • 2nd symbol for terms available
      • Bugs/exceptions when moving or adding terms fixed
    • Feature tree editor
      • drag&drop from (feature) term editor available
      • Right click menu added (replacement for buttons)
      • copy&paste added (for the rare case that a feature should be reused within the tree)
    • Name editor
      • invalid designations available similar to pro parte synonyms and misapplied names (formatting not yet correct)
    • Description/Character Editor (experimental, multiple improvements)
    • Taxon node wizard improved
    • Automated deduplication of references and authors works also for new taxon dialog (before it worked only in name editor)
    • Bugs
      • Improved (title)cache updating
      • Empty dialog for File -> New -> Reference -> Change reference type fixed
      • Some exceptions thrown in term editor fixed
      • sometimes invisible deduplication icons fixed in bulk editor
      • handling of deleting new+unsaved records fixed in bulk editor
  • Web editor (Phycobank registration UI)

    • Reference editor
      • Reference editor: Label In proceedings in InProceedings missing
      • ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
      • ReferencePopupEditor: apply sensible reference type pre-set for in references
      • ReferenceEditor: filter inReferences by applicable reference type
      • ReferenceEditor misses institution, organization and school fields
    • TaxonNameEditor:
      • Entering data for name parts (genus, specific epithet) is now required
      • Exclude current name from name relationship comboboxes
      • orthographic name correction available
    • Registration start view:
      • Reference combobox to offer two search modes
      • Exclude irrelevant reference types from list of existing publications
    • Registration Workingset Editor
      • A couple of severe bugs fixed
      • realiably setting registration date when status is set to PUBLISHED
    • Registration search
      • Registration items in list view is using the wrong button icons for blocking regs and validation errors
    • SpecimenTypeDesignationEditor
      • Display of altitude fixed and also a related problem when saving
      • GeoLocationField uses OpenTopoMap
      • Collection date supports timespans
      • Improved user feedback
      • Geolocation
        • Suopport for reference systems
        • Map shows error radius
    • cdmlib-vaadin UI widgets
      • Reference combobox options with ellypsed reference titles
      • ToOneRelatedEntityCombobox validation fixed, layout problems solved
      • PopupEditors notify user on editor changes and allow the user choose from discard or save in a dialog
      • PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
    • Label improvements
    • Permission and security improvements
    • Performance improvements
    • Classification fragments are managed in a non cyclic directed graph, this mainly improves the search capabilities
      • Automatic management of the graph during editing of RegistrationStatusFieldInstantiator
    • Bugs fixed:
      • Massive memory consumption problem solved
      • Multiple representations problems fixed
      • LazyInitializationExceptions fixed
      • Fixing problems with possibly corrupted hiberante sessions
    • Complete removal of the rejected messaging prototype implementation

# Subject Status
  cdm 6 Collapse all/Expand all
7913 Remove authorship from IJournal and IPrintSeries Closed
7914 Add ISBN to IProceedings Closed
7915 Remove date published from journals and print series Closed
7918 Revision of reference type specific properties Closed
7930 Remove DOI from journals, print series and person communications Closed
8030 Cache updater service methods externalized and base class specific Closed
  cdm-dataportal 13 Collapse all/Expand all
7564 remove Phycobank - Registration data - block and other outdated registration code Closed
7616 reference page: show name types Closed
7907 Annotations in Reference page do not respect the annotation settings Closed
7927 Registration not found, Portal handling registrations in preparation Closed
7947 registration page shows name relations Closed
7974 Layout for Registration date Closed
7977 Registration page layout improved Closed
8048 Selenium test for Registration page Closed
8051 improve display of registration items lists Closed
8056 WSOD in cdm_dataportal/search/results/taxon Closed
8073 Registration page: show typified name for registrations covering typifications only Closed
8074 Registration page has fatal error when registration identifier in url path is ivalid Closed
8076 implement test for typified name for registration page Closed
  cdm-vaadin 45 Collapse all/Expand all
7218 SpecimenTypedesignationsWorkingsetEditor: support for Reference system Closed
7245 validation of ToOneRelatedEntityCombobox not working Closed
7480 ReferenceEditor misses institution, organization and school fields Closed
7481 ReferenceEditor: filter inReferences by applicable reference type Closed
7559 possibly corrupted hiberante session after previous error on saving editor Closed
7639 SpecimenTypeDesignationEditor: Altitude not saved and displayed properly Closed
7718 New Registration: Exclude irrelevant reference types from list of existing publications Closed
7833 submitters can access see any registration in any RegistrationWorkingSet Rejected
7846 PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar. Closed
7866 Phycobank UI further label improvements Closed
7867 FieldGroup$BindException: The given field is not part of this FieldBinder in TeamOrPersonField Closed
7870 RegistrationWorkingsetEditor: Internal error on clicking "new name" Closed
7878 Edit CollectionCode not saved Closed
7888 TypeSpecimenEditor: Collection date should be timespan Closed
7892 RegistrationWorkingsetEditor: LIE creating new name for book section Closed
7893 RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled Closed
7899 enable orthographic name correction in Vaadin Closed
7900 Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets Closed
7905 NPE in InstitutionEditorPresenter Closed
7906 AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save Closed
7908 Redmine communication hub slows down RegistrationWorkingSets Closed
7910 TeamOrPersonField: readonly exception on bindig data Closed
7916 SpecimenTypeDesignationEditor: Map shows error radius Closed
7919 GeoLocationField uses OpenTopoMap Closed
7925 AbstractPopupEditor: exception handling in save method is incomplete Closed
7937 TaxoNamePopupEditor: Exclude current name from name relationship comboboxes Closed
7942 SpecimenTypeDesignationEditor: Explanation on why editor can not be saved without type designation Closed
7944 TaxonNamePopEditor: name part fields are required Closed
7946 RegistrationStatusFieldInstantiator must set status value internally before adding the ValueChangedListener Closed
7949 New Registration: Reference combobox to offer two search modes Closed
7950 ToOneRelatedEntityCombobox: add new button "jumpes" to the right when hovering the mouse over Closed
7951 Reference Combobox option titles can be too long causing the select box to extend too much Closed
7956 RegistrationWorkingsetEditor refresh problem after saving TaxonNameEditor Closed
7995 Registration.registrationDate not set when status is set PUBLISHED Closed
8013 LazyInitializationException (LIE) in RegistrationDTO.makeBibliographicCitationStrings Closed
8031 Cannot add existing name to blank workingset Closed
8039 NPE when creating new name in unsaved NameTypeDesignation for exising name in workingset which has no registration yet Closed
8059 NPE when adding existing but un-registered name to workingset Closed
8063 multiple representations problem wirth collector being author of the registration citation Closed
8064 NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() on saving new name for new registration with new genus Closed
8069 RegistrationUI: remove all messaging related code and message indicators from all views Closed
8070 ReferencePopupEditor: apply sensible reference type pre-set for in references Closed
8071 ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity Closed
8072 Registration items in list view is using the wrong button icons for blocking regs and validation errors Closed
8090 Reference editor: Label In proceedings in InProceedings missing Closed
  cdmadapter 1 Collapse all/Expand all
7903 Add treeIndex with rank to cdm light export Resolved
  cdmlib 7 Collapse all/Expand all
7217 SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats Closed
7600 public setters for entity collections Closed
7874 TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters Closed
7901 Make PreferencePredicates an interface to allow multiple implementations (e.g. for client apps, for grouping, for data type specific instances, etc.) Closed
7917 Revise ReferenceSystemTerms Feedback
7939 TaxonNodeDTO need sortIndex of Rank Closed
8066 CdmUserHelper.createAuthorityFor() causes flush of pending transactions Closed
  cdmlib-remote 4 Collapse all/Expand all
7924 LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter Closed
7972 explicitly allow disallow access to HTTP Invoker endpoints (/remoting/**) Resolved
7978 registration search result ordered by identifier descending Closed
8042 UI is too restricted for users with right Project Manager Closed
  cdmserver 1 Collapse all/Expand all
6522 package cdm-server in docker container Closed
  data 1 Collapse all/Expand all
7811 Import higher classifications Resolved
  taxeditor 45 Collapse all/Expand all
4227 handle generated resources in eclipse workspace Feedback
5926 Update labels in TermEditor for Vocabularies Closed
6805 Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor Closed
6806 Add context menu to FeatureTreeEditor Closed
6951 Drag and drop does not update term hierarchy in the UI Closed
7163 Restructure preferences Closed
7367 Deleting a term in the term editor does not update the UI Closed
7649 Term editor loads/saves extremely slow Closed
7668 NPE when changing author Closed
7680 Refactor TaxonNodeDetailElement Closed
7737 Reference Details view does NOT give a multiple usage warning Closed
7746 NPE when deleting volatile DescriptionBase Closed
7761 Invalid designations should be displayed like misapplied names in name editor Closed
7794 Update TaxonNodeWizard Closed
7806 GfBio Term Search issues Closed
7836 ClassCastException when invoking cdm light export with wrong selection Closed
7847 Use separate column for row state instead of symbol in titleCache column Closed
7849 Improve DB Preferences handling and saving in TaxEditor Feedback
7850 Further problems with term editor Duplicate
7854 Open issues in TaxDistributionEditor Closed
7856 Allow local override for distribution vocabularies Closed
7868 Allow creating a new vocabulary in vocabulary selection dialog Closed
7869 Run gfbio term service requests as background tasks Closed
7871 Open character matrix as singleton Closed
7873 Implement copy&paste for feature nodes in feature tree editor Closed
7875 Add multiple area selection to descriptive data set editor Closed
7877 Form elements disappear in reference dialog after changing the reference type Closed
7880 Implement centralized preference default loading strategy Closed
7887 Use DTOs in term editor Closed
7912 Enhance checkbox tree viewer Closed
7929 after delete of not persisted object in bulkeditor the object is still in bulkeditor list Closed
7931 add symbol2 to term detailsview Closed
7933 Adding a new Term to the "Country" vocabulary leads to corrupt data Closed
7934 sometimes the signs for deduplication are not shown Closed
7940 "New" menu in navigator not available for certain users Feedback
7941 Deduplication does not work in new taxon dialog Closed
7954 protected vs. unproteced caches in TaxEditor Closed
7985 Remove Print Series from InProceedings, use "Proceedings" Closed
7993 Display "Access Denied" dialog in case the remoting service responds with status code = 4xx Closed
7998 Store newly created Characters in selected vocabulary Closed
7999 Allow override does not work correctly for distribution areas Closed
8026 details view is empty for some references in bulk editor Closed
8032 NPE when editing Local Prefs -> Factual Data Closed
8037 "Detail" is not saved in taxon node wizard Closed
8041 PatternSyntaxException in FeatureTreeSelectionDialog Closed

CDM Platform 5.4 (released on Oct 25th, 2018)

Issues: 54

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • Documentation

    • online webservice documentation was broken since 5.3. Fixed.
  • Dataportal

    • display of related taxa (misapplied names, pro parte synonyms, concept relations)
      • sort order
      • hyperlink to related taxa was missing
      • further links (???)
    • phycobank/name registration related
      • search via taxon graph (#7835)
      • improvements on name registration page
      • hide unpublished names, types and registrations (#7723)
  • TaxEditor

    • restart menu available
    • distribution editor
      • further improvements, now it is not an experimental feature anymore (but still has some open issues, we recommend to contact us before using)
      • improved area selection (still some issues)
      • predefined source selection
      • support supplemental data
      • support various symbols/labels for areas and status
    • performance
      • faster loading of details view and other views (open issues exist)
      • faster creation of factual data view right click menu
    • bulk editor
      • multiple columns available for display and sorting
      • symbol indicating deduplication status
    • navigator
      • set excluded and unplaced via right click menu
    • name relationships allow reverse direction
    • hybrid flags enabled/disabled rank specific
    • determination events can now have sources
    • factual data
      • improved labels for descriptions including sources
      • available common name references can be explicitly marked
      • reference search on alternative identifiers possible parallel to title (cache) search
      • add sources to descriptions when creating them (explicit menu item)
      • reorder menu ("new" on top, ...)
      • available distribution area vocabularies and status and common name areas definable via DB preferences
    • further database sided preferences implemented (there are still some bugs, we recommend contacting us before using DB sided preferences)
      • exclude specimen, media, import/exports, multiple classification functionality
      • further attributes for simplified name details view
      • distribution area vocabulary selection
      • distribution status selection
      • checklist perspective as start perspective
      • simplify sources view (hide IdInSource and IdNamespace)
    • client side (local) preferences stored database specific
      • if users use multiple databases client side preferences often need to be different depending on the database in use; now also client side preferences are stored for each database and not for the complete TaxEditor installation anymore (only valid for newly changed preferences)
    • NOTE: preference handling (server and client side) still has some severe open issues, we will try to work on them for the next release, so we recommend to handle with care until then
    • bugs:
      • taxon node editor does not allow editing existing taxon data anymore, only taxon node data
      • right click menu sometimes does not show up in name editor
      • exceptions when editing terms in term editor
      • freezing login dialog if no connection established
      • exception after saving bulk editor
      • exception during specimen search in bulk editor
      • exception when canceling "move elements" in factual data view
  • Browser Editor (Vaadin)

    • performance
      • big workingsets in the RegistrationWorkingSetEditor are loading much faster now. This improvement also has positive effects on other editors (#7785)
    • usability
      • multiple classifications and classification fragments can be merged into a common taxon graph structure. This graph first of all allows searching names by higher ranked names. Edits of names are automatically tracked in the graph. (#7834)
      • New mode for the TaxonNameEditor: VALIDATE_AGAINST_HIGHER_NAME_PART. This mode requires that a higher name must exising in the data base before it can be used as name part. (#7783, #7648, #7831, #7830, 7845)
      • improving some labels in the UI
    • bugs
      • memory issues (#7036, #7036)
      • problem with session attributes in different CDM Instances

# Subject Status
  cdm-dataportal 4 Collapse all/Expand all
7723 PhycoBank unpublished data must not be visible in Portal Closed
7778 identifier links missing in taxon relations footnotes Closed
7788 Registration page shows registration date and office Closed
7835 taxonGraph search block implemented Closed
  cdm-vaadin 16 Collapse all/Expand all
7036 correctly release vaadin view resources when the browser windows has been closed Closed
7047 Vaadin UI and View scope beans are not always destroyed correctly Closed
7222 Phycobank UI improve labels Closed
7594 RegistrationWorkingsetEditor click on new serveral times Closed
7630 blocking registration relations get lost after saving adding a typedesignation to a newly created "typification only" registration Closed
7648 Create taxonrelation to genus or species when subordinate names are created Resolved
7777 NPE on login attempt after logout Closed
7783 NamePopupEditor new buttons for genus and species Closed
7785 CdmUserHelper caches permission information Closed
7814 Section in Name and section in Basionym, usability Closed
7824 PopupViewRegistration not removing registered views causes memleak Closed
7830 VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to testfield on rank changes Closed
7831 VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when changing species to subspecies Closed
7842 TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException Closed
7845 NamePopupEditor new Genus button should clear the genus name field in the new editor Closed
7855 PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly Closed
  cdmlib 5 Collapse all/Expand all
7767 Incorrect handling of secundum detail reference in formatter Closed
7776 Add source of descriptive data set to SpecimenDescriptions added to it Resolved
7795 untilis xml DataSets creation without "[NULL]" values Closed
7818 TaxonRelationshipsDTOTest leaves test environment in unpredictable state Feedback
7834 taxonGraph search listing all included names implemented Closed
  cdmlib-remote 2 Collapse all/Expand all
7779 swagger UI broken after springfox-swagger2 upgrade Closed
7784 deduplicate and harmonize ClassificationController methods Closed
  taxeditor 27 Collapse all/Expand all
2406 DeterminationEventElement is lacking references Closed
2444 Disable binom and trinom hybrid flag when epithets are not available Closed
3276 NPE for "Move Elements" context menu option Closed
3989 [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs Resolved
6159 improve distribution editor in TaxEditor Closed
7063 Improve the area selection wizard for distribution editor Closed
7235 Make available area vocabularies a database preference for TaxEditor distribution editor Closed
7236 Make available distribution status a database preference for TaxEditor distribution editor Feedback
7283 Improvements for alternative identifier search Resolved
7345 [E+M] Common name references selectable in TaxEditor Feedback
7424 right click menu does not show up in name editor Closed
7502 Add further columns to bulk editor Closed
7660 Indicate the row state in a NAT table via symbols Closed
7674 Show taxon descriptions in character matrix editor Closed
7773 when changing rank the hybrid section is empty Closed
7775 Factual Data label issue Closed
7792 Rendering of context menu of factual data view is super slow Closed
7793 Master ticket for E+M editor issues Feedback
7809 Improve namerelationship handling in editor Feedback
7810 DB preference to make all Specimen functionality/menu items invisible Feedback
7826 NPE after saving groupbulkeditor Closed
7827 LazyInitializationException when saving term editor (named areas) Closed
7838 Optimize details view creation for section expansion Closed
7844 LoginDialog freezes Taxeditor if no connection can be established Feedback
7883 IndexOutOfBoundsException in TermComboElement Closed
7886 Divide local preferences to db dependend local preferences Resolved
7911 Changing areas in Distribution Editor yields to wrong column labels Resolved

CDM Platform 5.3 (released on Sep 17th, 2018)

Downloads: TaxEditor, CDM Server, Data Portal

Issues: 51

What's new?

  • General

    • Allow handling "continued" for reference date published for dates like 2017+
    • Allow filtering some webservices on taxonomic subtrees
  • Dataportal

    • Creation of data portals with a filter on taxonomic subtrees (e.g. families)
    • Formatting of misapplied names and invalid designations refactored (and hopefully improved)
    • Improved advanced search on taxa with geo-filter, * on start does work now, but still remaining issues for searches including * and whitespace
    • Improved handling of specimen with protected cache
    • Tree View for specimen data (still experimental)
    • Bugs
      • Fix for aggregated images not being shown anymore
      • Fix empty bibliography sections
      • Fix disabling of determination keys block in tab-less taxon pages
  • Export

    • Improved handling for types in CDM light export
  • TaxEditor

    • "Continued" for date published (see General section) available in TaxEditor
    • External links for sources (not yet implemented in data portal)
    • Label changes
    • Consistent handling of Description and DescriptionElement sources
    • Warning if Media are linked multiple times
    • Improved synchronization between views when moving factual data
    • Improved formatting of misapplied names and pro parte synonyms (synchronized with formatting in data portal)
    • Ordering misapplications with defined alphabetic order
    • Editing of supplemental data for descriptive data sets
    • Specimen Tree Editor collapsable and expandable
    • Bugs
      • Protected cache handling in details view for References
      • Exception when deleting a polytomous key
      • Dialog to avoid creating users with duplicated usernames
      • Exception when trying to create a new datasource
  • Browser Editor (Vaadin)

    • Reference editor offers field for adding notes
    • Multiple important bug fixes to increase the overall stability and reliance of the registration system
      • Preventing from creation of empty registrations
      • Problem with inserting several new authors into a new author team solved
      • Memory leak eliminated

# Subject Status
  cdm-dataportal 7 Collapse all/Expand all
6289 “Back to images” link as “Back to taxon page” when in table-less mode Closed
7294 keys block can not be disabled in tabless taxon page Closed
7658 use new taxon relationship DTO webservice in portal Closed
7686 Specimen title cache issues in data portal specimen table Feedback
7691 Empty "Bibliography" section Closed
7720 use new taxonRelationshipsDTO webservice for all taxon relations Resolved
7759 classification subtreefilter settings in portal Closed
  cdm-vaadin 11 Collapse all/Expand all
7560 LazyInitializationException (LIE) saving TaxonNamePopupEditor caused during hibernate.search indexing Worksforme
7582 prevent from creating empty registrations Duplicate
7585 RegistrationCuratorRoleProbe does not only check the ROLE_CURATION Closed
7622 RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system Closed
7624 Note field for Reference in Vaadin Closed
7641 Reference editor: Error when incerting several new authors into a new author team Closed
7676 Suchfunktionalität in Registration UI Dateneingabe Closed
7702 corrupted hibernate session after previous error during save operation Closed
7712 PhycoBank UI Reference detail size Closed
7722 NamePopupEditor: validation not working for rank genus Closed
7742 vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks Closed
  cdmadapter 1 Collapse all/Expand all
7700 use TypeDesignationSetManager for creating typedesignation string in cdmlightExport Resolved
  cdmlib 7 Collapse all/Expand all
5868 re-establish support for wildcard at start of query string (includes the query string '*' ) Feedback
7553 move TypeDesignationSetManagerIT to cdmlib Closed
7644 Add "continued" flag to (Verbatim)Timeperiod Closed
7687 NPE in TypeDesignationSetManager Closed
7756 org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery() Feedback
7757 Replace deprecated hibernate @Index annotation Closed
7764 Fix classification and synonym bug in taxon name freetext search Resolved
  cdmlib-remote 1 Collapse all/Expand all
7745 Subtree filter for dataportal services Resolved
  taxeditor 24 Collapse all/Expand all
3535 Automatically update descriptive view if content changed Closed
4573 Handle duplicate username, group or grantedAuthority correctly Closed
6475 Make specimen tree editor collapsable and expandable Closed
6559 Order misapplied names in name editor Closed
6742 IAE when using "Link with taxon selection" in Specimen-Editor Closed
6850 NPE when clearing label of "kind of" term in TermEditor Closed
7362 Implement view for Gfbio terminology service Closed
7371 Deleting Polytomous Key throws NPE Closed
7412 Allow editing supplemental data for DescriptiveDataSets Closed
7415 Implement ExternalLinks for OriginalSources in TaxEditor Closed
7484 Protected titleCache handling not correct in Reference detail view Closed
7500 Can't open both related accepted taxa of reused MAN Closed
7509 Aggregate and persist specimen character data from character matrix Closed
7575 Implement advanced quantitative cell editor Closed
7665 ConcurrentModificationException when closing Editor Resolved
7667 NoHttpResponseException for large queries in bulk editor Feedback
7698 CCE when creating new datasource Closed
7706 Warning for reused Media is missing Closed
7715 Description sources should be handled same as DescriptionElement Closed
7717 Implement "continued" in TimePeriod UI Closed
7726 Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references Closed
7728 NPE in wizard when changing type of reference Closed
7738 NPE for cancel in Use existing media dialog of specimen tree editor Closed
7753 use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor Closed

CDM Platform 5.2 (released on Aug 17th, 2018)

Downloads: TaxEditor, CDM Server, Data Portal

Issues: 76

What's new?

  • General

    • Some improvements for ABCD import
    • Some minor improvements for CDM light export
    • New webservice for formatted taxon relationships (misapplications, pro parte synonyms, concept relationships) - available in data portal in next version
  • Dataportal

    • Reference page
      • proper formatting of taxon names in registration summary
      • proper handling of date published without end date
    • Specimen tab
      • remove "associated with" in compressed table
      • correct handling of freetext in altitude, distance to gorund and watersurface in default specimen table
      • correct handling of missing values for numeric values (do not show 0 anymore) in default specimen table
    • Name Registration
      • TBC
  • TaxEditor

    • Bulk editor
      • improve new implementation with so called NAT tables
      • asynchronous loading of data for large datasets
    • specimen
      • remaining issues for determinations in details view
    • Bugs
      • Taxa, being misapplied names or pro parte synonyms elsewhere, always show misapplied name details view
      • specimen server preferences are not saved
      • exception handling for media with corrupted metadata
      • exception out of bounds exception after deleting record in bulk editor
      • problems with progress monitor for setting publish flag for subtree (maybe some issues open)
      • dragging a misapplication on itself throws exception
      • multiple representations exception when adding annotation in bulk editor
    • experimental features
      • data aggregation in character matrix
      • improved workflow for editing descriptive data
  • Browser Editor (Vaadin)

    • TBC: name registration issues

# Subject Status
  cdm-dataportal 14 Collapse all/Expand all
6563 Display altitude, distance to Ground and watersurface correct handling of freetext Closed
7494 RegistrationSearch implemented Closed
7495 Registration page implemented Closed
7496 TaxonNodes in cdm_taxontree can either link to taxon or reference search result pages Closed
7552 use TaggedText.entityReference to add style and uuid to html tags Closed
7562 Specimen table "Associated with" taxon is irritating and needs to be removed, replaced Closed
7592 Search Button PhycoBank Test Closed
7595 PhycoBank Portal - Order Reference name Closed
7596 PhycoBank Portal - Formatting Closed
7601 date published time period in reference page shows 'to' even if end date is missing Closed
7602 reference page: proper formating of taxonnames in registration summries Closed
7605 harmonize cdm_tagged_text_to_markup() with tagged text strategy in cdmlib Closed
7611 media types with media uris are clickable Closed
7615 Registrations not searchable in the PhycoBank portal Closed
  cdm-vaadin 29 Collapse all/Expand all
7131 Registrations ListView has pager to browse the whole result set Closed
7274 GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit Closed
7358 Show warning when browser history back is used while popup editors are open Closed
7361 Consistent UI concept for create, new, add, remove, delete, edit buttons Closed
7524 TaxonNameEditor blocks entering new names for genera Closed
7528 Allow changing the Registration status in the RegistrationWorkingsetEditor Closed
7533 add typeStatus filter to registration list Closed
7534 registration list filters preserved in session Closed
7535 TeamOrPersonField: remove OK button an select the chosen enitity immediately Closed
7545 IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration Closed
7546 Better guidance for users when creating registrations for exising names Closed
7547 ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly Closed
7554 TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state Closed
7557 TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a sub popup editor Closed
7566 TeamOrPersonField: some Persons can not be selected Closed
7568 SpecimenTypeDesignationEditor: Collector Field not following the readonly state of the editor. Closed
7569 SpecimenTypeDesignationEditor: Typedesignations should be ordered Closed
7570 Institution editor implemented Closed
7571 Collection editor has field to select and edit the institution Closed
7572 SpecimenTypeDesignationEditor: Collection combobox shows collection.code and collection.institution Closed
7573 CollectionPopEditor superCollection only visible for advanced users Closed
7574 IllegalStateException: Multiple representations ... when saving ReferenceEditor with in Reference ... Closed
7583 NPE on logout in registration list view Closed
7586 com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetEditor Closed
7588 ToOneRelatedEntityCombobox: edit button must not be enabled when value is null Closed
7591 Vaadin Layout Reference new Closed
7617 Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCode nicht auswählbar Closed
7628 Create registration for existing name (typification only) creates two registratios Closed
7629 creating a typification only registration should not be possible if the names protologue is in the current workingset Closed
  cdmadapter 1 Collapse all/Expand all
7643 cdmlight export: for bibliographic short citation use the freetext of the date as default Closed
  cdmlib 13 Collapse all/Expand all
6682 Formatter and DTO for taxon relationships (e.g. misapplied names) Closed
6695 module cdmlib/services should not be an osgi bundle Closed
7429 Improve parsing and formatting for VerbatimTimePeriod Closed
7525 IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria Closed
7527 CdmEntityDaoBase.*ByParam() public and also available in the service layer Closed
7531 PermissionDeniedException on flushing registration with modified status even if the user has the required authority Closed
7542 Move synonym of homotypical group to taxon does not move the homotypical group correctly Closed
7550 Move UserHelper from cdm-vaadin into cdmlib Closed
7551 TypeDesignationSetManager provides summary as TaggedText Closed
7555 TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis" Closed
7590 findByTitleWithRestrictions allows combining Restrictions by OR Closed
7607 TypeDesignationSetManager: remove brackets from type representations Closed
7608 TypeDesignationSetManager: string representations for media types are missing Closed
  cdmlib-remote 4 Collapse all/Expand all
6967 RegistrationController identifier endpoints implemented Closed
7348 RegistrationDTO webservices implemented Closed
7561 OccurrencePortalController and FieldUnitDTO should not allow passing the determintation, associated name as argument Closed
7578 preseve null values in all mesurements during serialization of webservice responses Closed
  taxeditor 15 Collapse all/Expand all
6321 Implement parallel loading + progress bar for loading objects into the bulk editor Closed
7418 remaining specimen determination details view issues Closed
7505 IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor Closed
7518 remaining issues for usage of NatTable for bulkeditor Closed
7544 Dragging a misapplication onto itself throws an exception in name editor Closed
7549 Show tooltip for data aggregation in character matrix Closed
7576 Set Publish Flag for Subtree Dialog - Problems with Progressmonitor Closed
7603 Changing a user group does not work as expected Closed
7614 IndexOutOfBoundsException after deleting in bulkeditor Closed
7638 problem with media data missing meta data Resolved
7645 specimen admin preferences are not saved Closed
7647 accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view Closed
7677 Nomenclatural Status is always set to nom illeg in details view Closed
7679 NPE when creating root child in classification Closed
7681 Update date field when editing parse field in TimePeriodElement Closed

CDM Platform 5.1 (released on Jun 27th, 2018)

Downloads: TaxEditor, CDM Server, Data Portal

Issues: 42

What's new?

  • General

    • update script to model 5.0 fixed for PostGreSQL databases
    • freetext search indexing fixed after change in misapplied names
    • term related webservices include language information
  • Dataportal

    • Withheld taxa with publish=false from dataportal results (not yet implemented for freetext search on factual data)
    • External Links fixed
    • Default visibility for pro parte and partial synonyms and misapplied names
    • Find pro parte and partial synonyms in search
    • Creation date for media visible
  • TaxEditor

    • Recently used references list for reference search dialog (bibliographic references only)
    • Find pro parte and partial synonyms in search
    • Default value for taxon publish flag configurable (true, false, inherit)
    • Allow multiple selections for moving taxa
    • Progress monitoring for moving taxa
    • Default nomenclatural status is nom. illeg.
    • Further support for eclipse4
    • Bulk editor
      • change table type (using so called NAT tables now, which are more powerful)
      • sorting for columns by clicking on column headers
      • multi select for deduplication more user friendly
    • Bugs
      • fixed lazy loading exception for misapplied names with type specimen
      • incorrect title cache creation for persons with protected title cache
      • new team member added to the end of the list now
      • some File->New dialogues fixed
  • Browser Editor (Vaadin)

    • Improved consistency in taxon names by restricting the higher name parts like genus name or species epithet to names which are already known to the system. (#7364)
    • Support for validations and replaced synonyms in the TaxonNameEditor
    • Login dialog can be submitted by pressing the enter key
    • Fields visibility in the ReferenceEditor adapts to the Reference type
    • A Field for editorial notes is now available in TaxonName , NameType and SpecimenType editors
    • Bugs
      • Readonly state problems fixed
      • Fixing incomplete terms

# Subject Status
  cdm 2 Collapse all/Expand all
7468 Updated script for mediaCreated does not work for PostGreSQL Closed
7469 Updated script for individualCount column type in Postgres Closed
  cdm-dataportal 3 Collapse all/Expand all
6659 Show mediaCreated in dataportal Closed
7417 Make pro parte and partial synonym relationships always visible in data portals Resolved
7451 ExternalLinks [ext-links]: update search urls Closed
  cdm-vaadin 14 Collapse all/Expand all
7223 ReferenceEditor: disable fields depending on the Reference type Feedback
7257 Activate Enter key to send login in vaadin login Closed
7313 eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary Closed
7338 Validate taxon name against the higher taxon name Closed
7364 TaxonNameEditor supports editing of a validated name Closed
7386 TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym Resolved
7453 Registration Workingsets inconsistent for registrations for sections of publications Closed
7458 Note field for TaxonName , NameType and SpecimenType editors Closed
7461 Add oder by ISSN an ISBN to the PagingProvider for all Reference comboboxes Closed
7475 error when saving Reference editor with new empty Person in Team when OK or NEW was not pressed Closed
7476 RegistrationWorkingSetEditor: existing name combobox broken after saving a popup editor Closed
7477 TeamOrPersonField: ToManyRelatedEntitiesListSelect blocks removing new entries Closed
7482 TaxonNameEditor relpacedSynonym not set after adding or editing the related name Closed
7498 ClassCastException on saving popup editor for validated name Closed
  cdmlib 7 Collapse all/Expand all
4101 Default value for publish bit of new taxa must be configurable via DB preferences Closed
5477 lucene index not updated in all cases after Taxon.addMisappliedName Closed
7340 OderedVocabularies are initialised with DefinedTerms Closed
7445 Empty term uri and isoXXX fields should be null Closed
7467 taxon name parts lookup method with support for wildcard searches Closed
7478 Fix pro parte synonym search Resolved
7486 Fulltext taxon and name search not correct for Synonym based queries Closed
  cdmlib-remote 2 Collapse all/Expand all
3560 Withheld unpublished taxa from webservice used in E+M dataportal Resolved
7508 Add language information to term representations Closed
  data 1 Collapse all/Expand all
7092 Adapt dates in Nicks images after mediaCreated became TimePeriod Resolved
  taxeditor 13 Collapse all/Expand all
3984 Easier reference selection - recently used references Closed
4362 Some File->New dialogs do not work Feedback
4363 Show more informative message for unsupported specimen structures in specimen bulk editor Feedback
7010 Adapt handlers for multiple selection in e4 views Closed
7227 New name bulk editor shows all menu entries Worksforme
7422 Set nom. illeg as default in NomenclaturalStatusType ComboBox Closed
7430 New team members should be added at the end of the member list Closed
7439 Use NatTable for BulkEditor Closed
7452 TitleCache is not correctly set for new Person Closed
7463 Move taxonnodes should be available for multiple selection Closed
7464 make move Taxonnodes a longrunning task Closed
7472 lazy loading exception for MAN with type specimen Closed
7499 NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel Closed

CDM Platform 5.0 (released on May 16th, 2018)

Issues: 124

What's new?

  • General

    • Project Website (cybertaxonomy.org) migrated to Drupal 8
    • Demo servers renamed to demo I and demo II
    • Improved performance for saving
  • Model

    • Micrometer added to measurement units
    • Person last name and first name renamed to given name and family name
    • Add second under definable symbol to defined terms (e.g. for better representations of distribution status)
    • Change type of Media.mediaCreated from DateTime (single date) to TimePeriod (start and end time, freetext, ...)
    • Allow time for TimePeriod (before only dates were handled) - not yet handled in TaxEditor
    • Support for zoological in-Authors
    • Add verbatim date to publication date of references
    • Individual count for occurrence data changed from numbers to text
    • Added external links to sources (not yet supported in TaxEditor)
    • Rename "WorkingSet" to "DescriptiveDataSet" and make it a so called identifiable entity (=> some further attributes like sources, extensions, ...)
    • Added nomen oblitum to zoological name status vocabulary
  • TaxEditor

    • Further migration to Eclipse4 (e4) => migration finished now except for some open issues.
    • Hardcoded update sites to avoid problems with automated TaxEditor update in future (and for development)
    • Download site shows version number and release date
    • Name editor
      • Specimen Type Designation ordered by type
      • Pro parte and partial synonyms handled similar to misapplied names (internally handled as concept relationships)
      • Allow editing pro parte and partial misapplied names
    • References
      • Reference search via alternative identifiers available
      • References have verbatim date
    • Media representations have fixed order (by creation date in database)
    • Allow opening gathering events from referencing objects view
    • New Dialog for editing server based preferences, including some more preferences (but still incomplete)
    • Deleting names and taxa for specimen determinations
    • Usage view migrated to e4 and fully functional again
    • Taxon navigator
      • fully refactored underlying data model
      • improve performance
      • refresh mechanism improved for changes elsewhere
      • Progress monitor and cancel for set secundum for subtree (not yet available for set publish for subtree)
    • Feature tree editor
      • Multi-language support for feature tree editor
      • Details view and supplemental data view for feature tree/nodes
    • Rights&Roles: drag&drop for rights on features in rights editor
    • Facts
      • Fact label in fact view truncated and line breaks removed
      • Fact have a time scope now in facts details view
    • Refresh:
      • Taxon navigator after changes to taxa, names or sort order
      • Name editors with specimen types after a specimen has been deleted
      • Name editor after selecting a new taxon for a misapplied name
      • Name relationships and similar data in details view after selecting a new name for a taxon
      • Open taxa refreshed after setting secundum or publish flag for subtree
      • Refresh reference title cache after changing in-reference title in edit dialog
    • Renaming:
      • Person: lastname => family name; firstname => other/given name
      • Specimen Bulk Editor => Specimen Editor (List) and Derivative Editor => Sepcimen Editor (Tree)
      • Working Set Editor => Descriptive Data Editor
    • Distribution Editor
      • Available areas as server based preferences
      • Area selection dialog improved
      • some further bug fixes (still some open)
    • Bug fixes:
      • Selection of nomenclatural code in "new taxon" dialog
      • Accepted taxon and new synonym disappear after creating homotypic synonym
      • Right click menus in name editor
      • correct handling of doubtful in misapplied names
      • Missing labels for gathering events in referencing objects view
      • dirty flag after number recomputation in polytomous key
      • saving of preferences only after pressing "Finish" button
      • Exception after selecting a team after team has been merged in bulk editor
      • Show only accepted taxa for concept relationship taxon selection and polytomous key taxon selection
      • Exception when searching for "?" in Taxon search dialog
      • Exception when creating the first node in polytomous key
      • To many menu entries in a fresh name bulk editor
      • Do not allow self-referencing name relationships
      • Remove "open in ... referencing objects view" where not appropriate
      • Refresh issues for details and supplemental data view
      • Exception when deleting a type specimen
      • Excluded and excluded note notupdated in taxon node wizard
      • Removing country not possible in specimen editors
      • Dirty flag handling when deleting a synonym in name editor
      • Term could be opened multiple times for same term type, now they are singletons
      • Remove old data when again parsing a time period

# Subject Status
  cdm 17 Collapse all/Expand all
2335 Make WorkingSet IdentifiableEntity Closed
6588 Add URL and URL comment to OriginalSource / ExternalLink Closed
6699 Delete term version from CdmMetaData Closed
6720 Make individualCount a string Closed
6752 Add verbatimDate Closed
6879 Update uuid and name for admin user group Closed
6943 Allow zoological in-Authors in taxon names Closed
7074 Use TimePeriod for Media.mediaCreated Closed
7096 Add second symbol attribute to DefinedTermBase Resolved
7109 Rename nom. valid to nom. val. Closed
7144 Add country as level to all areas of type Country. Closed
7238 Rename lastName and firstName Closed
7277 Add micrometer to MeasurmentUnit Closed
7285 Edaphobase import: implement ranks Cohort, Hyporder Closed
7334 Make pro parte and partial synonyms real concept relationships Resolved
7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary Closed
7405 Rename WorkingSet to DescriptiveDataSet Closed
  cdm-vaadin 24 Collapse all/Expand all
6707 transient properties managed by ToManyRelatedEntitiesListSelect are not updated on save Duplicate
7241 Missing rights are not correctly indicated in Vaadin distribution editor - flexible vaadin errorhandler is needed Closed
7244 DistributionStatus editor help Resolved
7249 NameTypeDesignationEditor delete not working Closed
7269 Use redmine as message hub for submitter curator communication Closed
7314 support for dot and comma in Georeferenz, Error radius, Altitude, Distance to ... Closed
7322 registration workingset editor handles multiple different submitters correctly Closed
7333 LIE when creating registration for existing name Closed
7337 creating of new NameTypeDesignation for empty registration ends up without typified name Closed
7343 PersonField allows editing the nomenclaturalTitle Closed
7344 TaxonNamesEditor to fill authorship fields automatically if nomref and basionym are set? Closed
7349 RegistrationPopupEditor fails saving new References with new Team with 2 new memers Closed
7350 Collection date is not being saved Closed
7353 SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kindOfUnit Closed
7355 TaxonNamePopupEditor: newly created nomenclatural reference should be selected immediately Closed
7359 cdm popuop editors in readonly mode if the user is not permitted to edit Closed
7363 TaxonNameEditor supports replaced synonyms Duplicate
7365 enable CdmPopupEditors to operate on CdmDecoratorDTOs Closed
7366 TeamOrPersonField readonly if users lacks edit permissions Closed
7381 LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkingsetEditor for Registration with existing name Closed
7382 SpecimenTypedesignationsWorkingsetEditor blocks saving as long as typeDesignations are missing Closed
7385 TaxonNameEditor adapt field visibility to rank Closed
7387 TaxonNamePopEditor: ConstraintViolationException on saving a basionym Closed
7425 Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopupEditor Closed
  cdmlib 11 Collapse all/Expand all
7209 use git repos instead of svn in all pom.xml Closed
7287 Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite Closed
7289 hibernate warning HHH90000003 pollutes log files Closed
7308 Add nomen oblitum to zoological taxon name status Closed
7323 RegistrationVoter ignores uuid if propery given Closed
7354 DerivedUnitConverter handles associated SpecimenTypeDesignation correctly Closed
7360 users NOT having DELETE are permitted to delete References Closed
7368 cdm entities report persistence state Closed
7390 possible permission clash when adding basionym Duplicate
7392 Remove Cascade from relations Closed
8183 Make Feature IndividualAssociation a generalization of Specimen and Observation In Progress
  data 1 Collapse all/Expand all
7374 Set titleCache of feature trees to protected as long as i18n support does not yet exist. Closed
  documentation 3 Collapse all/Expand all
6158 Update EDIT documentation from svn to git Closed
6572 Adapt/Add Wiki pages for e4 development Closed
7001 Show date and/or version-number on taxeditor download site Closed
  taxeditor 68 Collapse all/Expand all
2380 TaxonNavigator should work with DTO objects instead of full blown cdm instances Closed
2450 DateTime field - Old values do not get deleted if you enter a new value to the parse field Closed
3161 Term Editors are no singletons Closed
3746 Implement time period scope for description elements in TaxEditor Closed
4048 Changing the name in free text editor does not refresh the taxon navigator view Worksforme
4136 authorship part of names not being refreshed in taxon navigator Closed
5193 Changing the name of a taxon does not refresh the taxon navigator Worksforme
5637 Selecting a new name for a taxon does not update the details view Closed
5687 search for alternative identifiers Closed
5696 When selecting a new name for a given taxon the name relationships are not updated Closed
5783 Rename demo instances back to demo I and demo II Closed
6219 Deleting synonym is persisted immediately, but the editor is set dirty Closed
6318 Truncate TextData in FactualData View Closed
6330 Defined sort order for Mediarepresentations Closed
6389 Returning a Map in cdmlib leads to data loss Closed
6437 Always update titleCache for nomenclatural reference Closed
6455 Remove not possible for country in field/derived unit details view Closed
6526 Show types in correct order Closed
6533 New taxon wizard does not refresh is excluded and excluded note information Closed
6565 [MASTER] Eclipse 4 Migration Closed
6568 Migrate perspectives Closed
6668 NPE in DetailsView when deleting a type specimen Closed
6746 Implement DetailsView and show SupplementalDataView for Feature Tree and FeatureNode Closed
6769 Usages can not be created anymore in usage perspective Closed
6779 Allow drag&drop for features in GrantedAuthority editor Closed
6804 Order areas in Distribution Selection Editor Resolved
6838 Implement i18n for FeatureTreeEditor Closed
6909 Migrate taxon navigator Closed
6913 Remove e3 parts and dependencies Closed
6925 Migrate general framework Closed
6931 Migrate uses view Closed
6973 Refreshing details and supplemental view Closed
7009 Replace part descriptor IDs in open handler with AppModel constants Closed
7031 Open in referencing objects view must not show "Open in referencing Objects" Closed
7065 When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled Closed
7079 P2 updates not found Closed
7102 Enable EDIT and DELETE for specimen determinations Closed
7215 Implement pro parte misapplied names in TaxEditor Closed
7226 Name relationship Dialog shows same name Closed
7230 Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4) Closed
7239 Rename last name by family name and first name by "Other/given names" Closed
7268 Re-implement own preference dialog Closed
7279 p2 sites are extremely huge Closed
7282 Still remaining feature tree editor issues Closed
7284 Multiple taxeditor jars created in p2 update for a single jenkins build Resolved
7290 Creating the first node in a new polytomous key throws NPE Closed
7291 PolytomousKey Node should not allow to search for synonym Closed
7292 TaxonSelectionDialog throws error when searching for '?' Closed
7295 When creating homotypic synonym the accepted taxon and new synonym are not shown anymore Closed
7300 NPE when selecting team member after merge in bulkeditor Closed
7301 Refresh open name editors when deleting specimen used in type designation Worksforme
7307 Synonyms should not be shown when creating a new concept relation Closed
7312 some preferences are saved immediately, cancel has no effect Closed
7320 dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode editor Closed
7324 Add "Open in.." for GatheringEvents in ReferencingObjectsView Closed
7325 Taxeditor uses CdmTransientEntityCacher from cdmlib-cache Closed
7326 NPE when setting focus on specimen in Specimen Editor (hierarchy) Closed
7328 Add label provider for GatheringEvent in referencing objects view Closed
7329 Unify naming for both specimen editors (bulk and hierarchy) Closed
7335 Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor Closed
7336 Implement partial misapplied names in TaxEditor Closed
7378 doubtful in misapplied names incorrect Closed
7379 right click menu of accepted taxa should not show "change to" Closed
7393 Fix regressions resulting from cascade removal from relationships in TaxEditor Closed
7395 Selection of nomenclatural code does not work in new taxon dialog Closed
7399 Adding taxon nodes to working sets leads to MultipleRepresentationException Closed
7411 adapt mediaCreated in taxeditor to timePeriod Closed
7421 Implement verbatim date for references in TaxEditor Closed

  • Browser Editor (Vaadin)

    • Many improvements in name registration editor
    • Help for distribution editor
    • Sorting of areas in area selection dialog

# Subject Status
  cdm 17 Collapse all/Expand all
2335 Make WorkingSet IdentifiableEntity Closed
6588 Add URL and URL comment to OriginalSource / ExternalLink Closed
6699 Delete term version from CdmMetaData Closed
6720 Make individualCount a string Closed
6752 Add verbatimDate Closed
6879 Update uuid and name for admin user group Closed
6943 Allow zoological in-Authors in taxon names Closed
7074 Use TimePeriod for Media.mediaCreated Closed
7096 Add second symbol attribute to DefinedTermBase Resolved
7109 Rename nom. valid to nom. val. Closed
7144 Add country as level to all areas of type Country. Closed
7238 Rename lastName and firstName Closed
7277 Add micrometer to MeasurmentUnit Closed
7285 Edaphobase import: implement ranks Cohort, Hyporder Closed
7334 Make pro parte and partial synonyms real concept relationships Resolved
7384 Order SpecimenTypeDesignationStatus according to new order in vocabulary Closed
7405 Rename WorkingSet to DescriptiveDataSet Closed
  cdm-vaadin 24 Collapse all/Expand all
6707 transient properties managed by ToManyRelatedEntitiesListSelect are not updated on save Duplicate
7241 Missing rights are not correctly indicated in Vaadin distribution editor - flexible vaadin errorhandler is needed Closed
7244 DistributionStatus editor help Resolved
7249 NameTypeDesignationEditor delete not working Closed
7269 Use redmine as message hub for submitter curator communication Closed
7314 support for dot and comma in Georeferenz, Error radius, Altitude, Distance to ... Closed
7322 registration workingset editor handles multiple different submitters correctly Closed
7333 LIE when creating registration for existing name Closed
7337 creating of new NameTypeDesignation for empty registration ends up without typified name Closed
7343 PersonField allows editing the nomenclaturalTitle Closed
7344 TaxonNamesEditor to fill authorship fields automatically if nomref and basionym are set? Closed
7349 RegistrationPopupEditor fails saving new References with new Team with 2 new memers Closed
7350 Collection date is not being saved Closed
7353 SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kindOfUnit Closed
7355 TaxonNamePopupEditor: newly created nomenclatural reference should be selected immediately Closed
7359 cdm popuop editors in readonly mode if the user is not permitted to edit Closed
7363 TaxonNameEditor supports replaced synonyms Duplicate
7365 enable CdmPopupEditors to operate on CdmDecoratorDTOs Closed
7366 TeamOrPersonField readonly if users lacks edit permissions Closed
7381 LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkingsetEditor for Registration with existing name Closed
7382 SpecimenTypedesignationsWorkingsetEditor blocks saving as long as typeDesignations are missing Closed
7385 TaxonNameEditor adapt field visibility to rank Closed
7387 TaxonNamePopEditor: ConstraintViolationException on saving a basionym Closed
7425 Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopupEditor Closed
  cdmlib 11 Collapse all/Expand all
7209 use git repos instead of svn in all pom.xml Closed
7287 Unit tests using the DefaultTermInitializer break subsequent integration tests in the suite Closed
7289 hibernate warning HHH90000003 pollutes log files Closed
7308 Add nomen oblitum to zoological taxon name status Closed
7323 RegistrationVoter ignores uuid if propery given Closed
7354 DerivedUnitConverter handles associated SpecimenTypeDesignation correctly Closed
7360 users NOT having DELETE are permitted to delete References Closed
7368 cdm entities report persistence state Closed
7390 possible permission clash when adding basionym Duplicate
7392 Remove Cascade from relations Closed
8183 Make Feature IndividualAssociation a generalization of Specimen and Observation In Progress
  data 1 Collapse all/Expand all
7374 Set titleCache of feature trees to protected as long as i18n support does not yet exist. Closed
  documentation 3 Collapse all/Expand all
6158 Update EDIT documentation from svn to git Closed
6572 Adapt/Add Wiki pages for e4 development Closed
7001 Show date and/or version-number on taxeditor download site Closed
  taxeditor 68 Collapse all/Expand all
2380 TaxonNavigator should work with DTO objects instead of full blown cdm instances Closed
2450 DateTime field - Old values do not get deleted if you enter a new value to the parse field Closed
3161 Term Editors are no singletons Closed
3746 Implement time period scope for description elements in TaxEditor Closed
4048 Changing the name in free text editor does not refresh the taxon navigator view Worksforme
4136 authorship part of names not being refreshed in taxon navigator Closed
5193 Changing the name of a taxon does not refresh the taxon navigator Worksforme
5637 Selecting a new name for a taxon does not update the details view Closed
5687 search for alternative identifiers Closed
5696 When selecting a new name for a given taxon the name relationships are not updated Closed
5783 Rename demo instances back to demo I and demo II Closed
6219 Deleting synonym is persisted immediately, but the editor is set dirty Closed
6318 Truncate TextData in FactualData View Closed
6330 Defined sort order for Mediarepresentations Closed
6389 Returning a Map in cdmlib leads to data loss Closed
6437 Always update titleCache for nomenclatural reference Closed
6455 Remove not possible for country in field/derived unit details view Closed
6526 Show types in correct order Closed
6533 New taxon wizard does not refresh is excluded and excluded note information Closed
6565 [MASTER] Eclipse 4 Migration Closed
6568 Migrate perspectives Closed
6668 NPE in DetailsView when deleting a type specimen Closed
6746 Implement DetailsView and show SupplementalDataView for Feature Tree and FeatureNode Closed
6769 Usages can not be created anymore in usage perspective Closed
6779 Allow drag&drop for features in GrantedAuthority editor Closed
6804 Order areas in Distribution Selection Editor Resolved
6838 Implement i18n for FeatureTreeEditor Closed
6909 Migrate taxon navigator Closed
6913 Remove e3 parts and dependencies Closed
6925 Migrate general framework Closed
6931 Migrate uses view Closed
6973 Refreshing details and supplemental view Closed
7009 Replace part descriptor IDs in open handler with AppModel constants Closed
7031 Open in referencing objects view must not show "Open in referencing Objects" Closed
7065 When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled Closed
7079 P2 updates not found Closed
7102 Enable EDIT and DELETE for specimen determinations Closed
7215 Implement pro parte misapplied names in TaxEditor Closed
7226 Name relationship Dialog shows same name Closed
7230 Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4) Closed
7239 Rename last name by family name and first name by "Other/given names" Closed
7268 Re-implement own preference dialog Closed
7279 p2 sites are extremely huge Closed
7282 Still remaining feature tree editor issues Closed
7284 Multiple taxeditor jars created in p2 update for a single jenkins build Resolved
7290 Creating the first node in a new polytomous key throws NPE Closed
7291 PolytomousKey Node should not allow to search for synonym Closed
7292 TaxonSelectionDialog throws error when searching for '?' Closed
7295 When creating homotypic synonym the accepted taxon and new synonym are not shown anymore Closed
7300 NPE when selecting team member after merge in bulkeditor Closed
7301 Refresh open name editors when deleting specimen used in type designation Worksforme
7307 Synonyms should not be shown when creating a new concept relation Closed
7312 some preferences are saved immediately, cancel has no effect Closed
7320 dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode editor Closed
7324 Add "Open in.." for GatheringEvents in ReferencingObjectsView Closed
7325 Taxeditor uses CdmTransientEntityCacher from cdmlib-cache Closed
7326 NPE when setting focus on specimen in Specimen Editor (hierarchy) Closed
7328 Add label provider for GatheringEvent in referencing objects view Closed
7329 Unify naming for both specimen editors (bulk and hierarchy) Closed
7335 Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor Closed
7336 Implement partial misapplied names in TaxEditor Closed
7378 doubtful in misapplied names incorrect Closed
7379 right click menu of accepted taxa should not show "change to" Closed
7393 Fix regressions resulting from cascade removal from relationships in TaxEditor Closed
7395 Selection of nomenclatural code does not work in new taxon dialog Closed
7399 Adding taxon nodes to working sets leads to MultipleRepresentationException Closed
7411 adapt mediaCreated in taxeditor to timePeriod Closed
7421 Implement verbatim date for references in TaxEditor Closed

CDM Platform 4.14 (released on Feb 15th, 2018)

Issues: 26

What's new?

  • General / Model

    • Export:
      • CSV_Print and CDM light: Progress monitor added (hopefully also fixes the problem of failing long running exports)
  • TaxEditor

    • Distribution Editor
      • Bugfix: Status not deletable
      • Natural sorting of areas
    • Feature Tree editor: several bugfixes
    • Rights Editor:
      • Allow Drag&Drop
    • Taxon Navigator:
      • Handling of excluded and unplaced (move to the end and use icon)
    • Bugs
      • Protected Cache for person editing not working
      • Opening a type specimen from referencing objects view throws an exception
  • Dataportal

    • Bugfix: Misapplied name search not working
  • Browser Editor (Vaadin)

    • Registration UI completed

# Subject Status
  cdm-dataportal 2 Collapse all/Expand all
6075 harmonize ' Enable auto-suggest' option with existing code Closed
6679 search for misapplied names in portal does not work Closed
  cdm-vaadin 12 Collapse all/Expand all
6562 vaadin mvp framwork presenters without view Closed
6740 Popup Editor for NameTypeDesignation Closed
6811 View and according Presenter are initialized 3x Closed
7174 SpecimenTypeDesignationWorkingsetEditor image reference add and edit problems Closed
7195 RegistrationWorkingsetEditor creates blocking relations for new basionym names Closed
7207 TeamOrPersonField and PersonField comboboxSelect is configurable to use different cache types Closed
7224 PersonField: implement support for 'initials' field Closed
7229 obsolte code in AbstractEditorPresenter.onEditorDeleteEvent? Closed
7231 replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts Closed
7240 Rename last name by family name and first name by "Other/given names" Closed
7246 ToOneRelatedEntityReloader.valueChange() not triggered after editing bean chosen in ToOneRelatedEntityCombobox or ToManyRelatedEntitiesComboboxSelect Closed
7247 TypeDesignationSetManager must not bundle NameTypes in workingset Closed
  cdmlib 2 Collapse all/Expand all
7250 add null checks to TeamDefaultCacheStrategy Closed
7262 add progress monitor to csv print export and cdm light export Resolved
  data 1 Collapse all/Expand all
7252 createdby_id often is null Closed
  taxeditor 9 Collapse all/Expand all
6547 Implement excluded and unplaced in taxon navigator Closed
6751 After shutdown error message in log file Worksforme
6786 Remaining feature tree editor issues Closed
7013 NonUniqueObjectException for setSecundumReferenceForSubtree Resolved
7030 Opening referenced object of type designation throws NPE Closed
7076 Add Nebula CompositeTable as direct dependency Closed
7234 Make areas in TaxEditor distribution editor sortable Closed
7237 Status are not deletable in TaxEditor distribution status Closed
7263 Protected title cache for persons does not work Closed

CDM Platform 4.13 (released on Feb 1st, 2018)

Issues: 63

What's new?

  • General / Model

    • Export:
      • DwC-A and CDM light: Add rank and area filter (not yet available in TaxEditor)
    • Added pro parte misapplied name relationship (not yet fully supported by TaxEditor and Dataportal)
    • Bugs:
      • DwC-A Export did use incorrect file endings
      • DwC-A Export include headers fixed
  • TaxEditor

    • Exports
      • DwC-A and CDM light: allow filtering for published taxa/synonyms only
      • DwC-A: filtering on single taxa
    • Performance
      • After selecting an area in area search dialog
    • Security:
      • Allow to fully forget "remembered" password
    • Taxon Navigator:
      • Consistent delete dialog for single nodes and nodes with children
      • Set for Subtree functionality: change of data synchronized with open name editors (still some open issues)
    • Search Dialogues:
      • Taxon search: Allow sorting by rank, too
    • Bugs
      • Fix in Caching mechanism: hopefully fixes many of the "multiple representations" exceptions
      • Bulk Editor
        • Set focus to newly created record
        • Exceptions when using wildcards for user and group search
      • TaxonNavigator:
        • ClassCast exceptions when synchronizing with NameEditor
        • Failing behavior after an exception
      • Default Classification for "Move factual data" dialogue
    • Character data editing (experimental)
      • New character matrix editor (only available as experimental feature)
  • Dataportal

    • FSI Viewer for media did not work for Chrome and other browsers anymore
  • Browser Editor (Vaadin)

    • Many improvements in name registration editor (not yet publicly available)

# Subject Status
  cdm 2 Collapse all/Expand all
7114 DerivedUnitConverter.convertTo() creates duplicate entities Closed
7158 Add pro parte misapplied name to the concept relationship types Resolved
  cdm-dataportal 1 Collapse all/Expand all
7164 fsi viewer no longer works in chrome browser Closed
  cdm-vaadin 26 Collapse all/Expand all
6796 PersonField: add UI Element to choose from existing Persons Closed
6867 explicitely assign and revoke UPDATE & DELETE permission per enitity in the registration workflow Closed
6871 TaxonNameEditor modes for basionym, replaced synonym and validation Closed
7070 Registration workingset support for sections Closed
7082 Implement integration test for the SpecimenTypeDesignationWorkingsetEditorPresenter Closed
7103 verify, fix, improve SpecimenTypeDesignationWorkingSetServiceImpl delete functions Closed
7130 Registrations ListView allows filtering the list of registrations Closed
7132 allow opening editors for name and typedesignations in readonly mode Closed
7135 TeamOrPersonField allows selecting from existing Persons and Teams Closed
7148 GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group Closed
7149 Collection Editor implemented Closed
7150 GrantedAuthorities & PermissionVoter for Cdm Collection type Closed
7154 CdmEntityCache can update cached entities Closed
7169 RegistrationWorkingSet class must use the in-reference as base citation in case a Section is used as nomenclatural reference. Closed
7170 TaxonNameEditor: option to suppress CombinationAuthorshipField & BasionymAuthorship when it contains no data Closed
7171 TaxonNameEditor: mode which only allows adding nomenclatory references which are sub references of the current one Closed
7172 creating Sections must be disallowd in StartRegistrationViewBean Closed
7176 published=false for Taxon where the according TaxonName is associated with an unpublished Registration Resolved
7181 TeamOrPersonField implement setReadOnly() Closed
7182 ToOneRelatedEntityCombobox implement setReadOnly() Closed
7187 ReferenceEditor: saving with DOI casues exception Closed
7194 NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox Closed
7197 system-admin autheticated through RunAsAuthenticator can stay authenticated after RuntimeException Closed
7204 ToManyRelatedEntitiesListSelect with edit and create button Closed
7205 use edit and create button for basionyms in the TaxonNamePopupEditor Closed
7206 CdmEntityCache not correctly updating with entitiy graphs loaded afterwards Closed
  cdmadapter 3 Collapse all/Expand all
6984 withHeader is not yet working in DwC-A export Closed
7180 cdm light export optionally filters by published flag Closed
7216 Import pteridophyta for Cuba checklist Resolved
  cdmlib 11 Collapse all/Expand all
7077 INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDesignation) should delete the type designation also from Registrations Closed
7137 Registration Identifier minter implemented Closed
7160 DwC-A meta.xml file has wrong file extension Closed
7161 DwC-A meta.xml file csv file references invalid Closed
7165 Extend TaxonNodeFilter with rank filtering Closed
7166 Implement area filter for TaxonNodeFilter Closed
7173 RegistrationDao supports sections Closed
7175 DwC-A export optionally filters by published flag Closed
7201 [DISCUSS] Should we remove created comparison from CdmBase.equals? Closed
7212 CacheLoader replaces loaded entities with uninitialized proxies Resolved
7219 CacheLoader.loadRecursive() fails handling proxy objects correctly Closed
  data 1 Collapse all/Expand all
7055 automatic creation of registrations from name extension only for latest reference Closed
  taxeditor 19 Collapse all/Expand all
6538 Add perspectives for working character data/matrix Closed
6728 Changing author data when editing a reference does neither update the reference titleCache nor the author label Closed
6762 Implement Character Editor Closed
6800 Allow all filters for DwCA export in TaxEditor Feedback
7008 Migrate export wizards Closed
7068 Move factual data to a new taxon should use same classification as default Closed
7069 Delete taxon node should have consistent configuration Closed
7078 sort result in taxon selection dialog Closed
7086 Implement WorkingSet Editor Closed
7095 Implement Character Matrix Closed
7111 synchronize button does not work as expected Closed
7127 dangling metacharacter exception in selection dialog Closed
7128 NPE in selection dialog Closed
7146 ClassCastException when clicking on synchronize button Closed
7153 Implement possibility to "logout" completely from TaxEditor Closed
7183 Creating a new reference in bulk editor the focus is not set to the newly created entity Feedback
7188 namedArea selection dialog needs too long to set the selected area Closed
7196 Check existing data when adding specimens to CharacterMatrix Closed
7228 Add concept and referencing objects view to supplemental view layer stack Closed

CDM Platform 4.12 (released on Dec 5th, 2017)

Issues: 26

What's new?

  • General / Model

    • Better support for SQL Server (not yet ready)
    • Tropicos import (not yet available through TaxEditor)
  • TaxEditor

    • Search Dialogs fully refactored
      • improve performance
      • improve usability (filter button, new record buttons)
      • fix bugs (multiple representation exceptions)
      • migration to eclipse4
    • Specimen Editor
      • edit & delete buttons added to specimen determinations
    • Name Parser
      • better recognition of reference duplicates
      • remove empty spaces in nomenclatural author names
    • bug fixes
      • exception when reusing taxon names
      • widget is disposed exceptions
      • multiple representation exceptions in bulk editor and specimen tree editor
      • refresh of taxon title after taxon/synonym swap
      • ask for saving when closing workbench
  • Browser Editor (Vaadin)

    • Distribution Editor
      • Ordering of areas by vocabulary defined order
      • German translation

# Subject Status
  cdm-dataportal 1 Collapse all/Expand all
7108 supress unwanted sourcetypes in handle_annotations_and_sources() Feedback
  cdm-vaadin 5 Collapse all/Expand all
7059 use kindOfUnit for TypeDesisgnations instead of DerivationEvent type Closed
7083 Implement URI form element for SpecimenTypeDesignationDTOs Closed
7097 Internationalization for distribution editor Resolved
7115 Order distribution areas by vocabulary order in distribution editor Closed
7636 remove obsolete code which dissociates removed TypeDesignations from Registrations Closed
  cdmadapter 2 Collapse all/Expand all
6606 Import Bogota specimen data Resolved
6965 Tropicos Import In Progress
  cdmlib 6 Collapse all/Expand all
4957 MS SQL Server not functional as it does not allow more than 2100 parameters Closed
6780 ConversationHolder isTransactionActive() returns true even if the transaction is completed Closed
6955 NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading Feedback
7080 Fix matching for empty time periods Closed
7094 Remove empty spaces in nomencl. title of persons Closed
7121 adapt remaining UuidAndTitleCache methods to use filter Feedback
  taxeditor 12 Collapse all/Expand all
6763 Editors do not ask for saving when closing the workbench Closed
7073 add extension to a name does not result in a dirty state Closed
7098 reuse name does not work Feedback
7117 Some bugs in Misapplied Name View after e4 migration Closed
7118 migrate selection dialogs Closed
7119 implement filter button for selection dialogs Closed
7120 implement new buttons for selection dialogs Closed
7122 titlecache of the taxon is not updated when swap accepted taxon and synonym Closed
7123 Multiple Represenation Exception in Derivate View and bulk editor Closed
7124 Avoiding multiple repesentation exceptions by removing the conversation from selection dialogs In Progress
7125 widgetIsDisposed exceptions when clicking in another part Closed
7126 supplemental data view shows the last selected name data when scrolling down in details view Closed

CDM Platform 4.11 (released on Nov 11th, 2017)

Issues: 40

What's new?

  • General / Model

    • Some minor improvements in the rights&roles module
  • DataPortal

    • Display name registration metadata in footnotes
  • TaxEditor

    • Eclipse3->Eclipse4 migration
      • migration
        • Editors: name editor, bulk editors, group authority editor
        • Views: search result, concept graph
        • Modules: molecular module, polytomous key module
        • Dialogues: preferences, import wizards and views,
        • others: taxon navigator, main menu, theme
      • bugfixes for bugs that came with the previous migration
    • Distribution editor: add possibility to add references to distributions (first version)
    • some improvements for the import/export wizard (e.g. order of configuration pages)
    • Setting publish flag for a classification subtree
    • Media View shows preview (first version, needs to be switched on in preferences)
    • Performance improvements (details view rendering, combo boxes, name editor focus)
    • Bugs
      • rank selection did not work if ranks were sorted naturally
      • drag&drop for classifications in navigator disabled
      • exception when switching type of description element in details view
      • size of search field to small
      • multiple minor issues
  • Browser Editor (Vaadin)

    • Distribution editor fixed and improved (ready for use in production)
    • Name Registration
      • Rights&Roles for Registrations
      • RegistrationUI: Buttons only enabled if the user has according permissions
      • phycobankID links only active when status is PUBLISHED
      • minor bug fixes

# Subject Status
  cdm-dataportal 1 Collapse all/Expand all
6985 display Registration metadata in footnotes Closed
  cdm-vaadin 9 Collapse all/Expand all
6802 Selection of distribution in Vaadin distribution editor does throw LIE Closed
6994 phycobankID links only active when status is PUBLISHED Closed
6995 Show phycobankIDs in Workingset editor Closed
6997 RegistrationUI: Show authenticated user in toolbar with option to logout Closed
6999 RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity Closed
7026 RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties Closed
7028 make available distribution status configurable in vaadin distribution editor Closed
7046 replace open session per view pattern by DTO strategy Closed
7053 TeamOrPersonField disabled state inconsistent Closed
  cdmadapter 1 Collapse all/Expand all
6953 use taxonNodeOutStreamPartitioner in CdmLightExport Closed
  cdmlib 4 Collapse all/Expand all
7016 implement a CdmPermissionVoter for TypeDesignations Rejected
7018 implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase Closed
7021 CREATE permission not sufficient to save new TaxonName entity Resolved
7027 GrantedAuthorityImpl.authority entities inconsistent Closed
  cdmlib-remote 1 Collapse all/Expand all
6987 LIE during name catalogue service call processing Closed
  taxeditor 24 Collapse all/Expand all
4155 Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree Closed
6569 Remove unused application model from taxeditor.application Closed
6595 Migrate name editor Closed
6622 Migrate remaining main menu items Closed
6862 Supplemental data view is grey when editing images in specimen tree editor Worksforme
6902 Migrate molecular module Closed
6908 Migrate polytomous key module Closed
6914 exception in bulk editor after search Closed
6921 Migrate data import views Closed
6924 Taxon name incorrect after swap synonym with accepted taxon Worksforme
6932 Migrate bulk editor Closed
6974 improve the io wizards Resolved
6989 Migrate concept graph view Closed
6990 Migrate search result view Closed
6998 Potential NPE with endless loop when switching type of description element in details view Closed
7000 clicking in specimen details of bulk editor results in an empty details view Closed
7005 Migrate import wizards Closed
7006 Migrate preferences Closed
7011 Migrate group authority editor Closed
7041 D&D for classifications should not be possible and corrupts data Closed
7044 Migrate theme Closed
7056 Media View should show Preview Resolved
7062 combo box for hierarchically sorted ranks select wrong terms Closed
7088 Media can not be saved in TaxEditor Closed

Previous Releases Archive

see CdmPlatformRoadmapArchive

simple-search-ignore-classification-setting.png View (23.3 KB) Andreas Kohlbecker, 03/19/2013 03:28 PM

open-topo-map-berlin.png View (380 KB) Andreas Kohlbecker, 07/19/2019 04:21 PM

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