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Release Notes » History » Revision 652

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Andreas Müller, 04/16/2021 11:09 PM


Cdm Platform Roadmap

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CDM Platform 5.23 (scheduled for May 24th, 2021)

Issues: 44

Downloads:(not yet available) TaxEditor, CDM Server, Data Portal

What will be new?

CDM Platform 5.22 (released Apr 16th, 2021)

Issues: 46

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Model
    • Handle taxon secundum source and classification source as "full" sources now with external links etc. (similar to nomenclatural sources) - classification sources are not yet handled as such in TaxEditor
    • Add "ratio to" for characters expressing a property ratio between 2 structures (e.g. length ration upper leave to lower leave)
  • - CDM Library
    • Improve name parser to recognize journals like PhytoKeys and PLoS ONE
    • Improve name parser to recognize and handle "ser." correctly
    • Improve formatting for bibliographic in-references
    • Improved formatting for taxa using a webpage as secundum reference (title does not include the URI anymore)
    • Improve taxon search for names with protected title cache (for these taxa the search runs on the full name and not on the name without author only now)
    • Sorting for certain invalid designations improved (e.g. for misspellings, which are set to the end now)
  • - Imports/Exports
    • Cdm light:
      • fix bug in type designation export
      • flag names in name type designations to make it possible to format them in italics
    • ABCD import:
      • mark taxon descriptions as specimens holding descriptions where suitable and use only a single description for holding specimens
  • - Data Portal
    • Refactored specimen tree view for specimen data shown as (derivate) tree
    • Lower default zoom level for maps
    • Fix sort order in condensed distribution strings for E+M
  • - TaxEditor
    • Referencing objects
      • improve performance
      • cancelable if list is long
      • allow "open in ..." also for sources
      • improved label for some categories
    • Sources
      • implement advanced secundum sources
      • Reduce visible fields for nomenclatural sources
      • Remove "type" from all external links
    • Bulk editors
      • fix behavior when they are opened first time by selecting a single record (e.g. via "open in" context menu) - the bulk editor could then not be used for further search anymore
      • show and allow editing by "created by"
      • text in fields is copyable
    • Make handling of original spellings configurable when deleting a name
    • Add symbol to taxon factual datasets holding specimens
    • Fix correct saving of publish flags for occurrences/specimen
    • Fix ordering in character editor structure tree
    • Fix multi-select handling for "open in distribution edito" in taxon navigator
    • Fix unpersisted term tree title for newly created term trees
    • Fix exception when reusing a name in new taxon dialogue
    • Fix cancel behavior for "Change accepted to synonym"
  • - Web editor

CDM Platform 5.21 (released Mar 10th, 2021)

Issues: 41

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Library
    • Added distribution status "undefined" to CDM library
    • Improved formatting for classifications
  • - Data Portal
    • Correct formatting of condensed distribution string for E+M
    • Show distributions of "fallback" areas in textual representations of distributions (for E+M)
    • Remove distributions with status "undefined" from distributions in data portal (for E+M)
    • Media viewer shows source data for images
  • - TaxEditor
    • Fix problem with using TaxEditor on a system using an non-standard encoding (e.g. Turkish)
    • Fix critical bug where data changes under certain conditions can get lost if a taxon and its parent taxon is edited at the same time
    • Improve performance when saving taxa (and some other operations), mostly for database with large classification trees
    • Support workflow for taxon operations (accepted -> synonym, syn -> acc, swap acc/syn, syn->misapplication, move taxon etc) if publish flag or secundum are not equal for taxon and "parent" taxon
    • Descriptive data matrix
      • Sources for "literature" records editable
      • Specimenlist added to taxon (individual associations) are marked as such
    • Make copyright statements reusable
    • Make abbreviated title and URI editable for rights statements in supplemental data view
    • Distribution status "isAbsent" attribute editable
    • Order termlists/-trees which are marked as unordered alphabetically by default
    • Remove multi-select from default feature tree selection
    • Improved image handling for images related to taxa or specimen (media view)
    • Further bugfixes
      • exception when swapping synonym and accepted if taxon is used in a descriptive dataset
      • exception when opening default feature tree selection preference page
      • exception when trying to open orphaned taxa in name editor
      • LayoutComposite exception when working with taxon related images
  • - Web editor
    • Phycobank registration UI
      • full support for type designation references
      • UI-improvements and bugfixes

# Subject Status
  cdm 1 Collapse all/Expand all
3816 Create "Undefined" status and choose it for NULL status Closed Actions
  cdm-dataportal 1 Collapse all/Expand all
5206 Status symbols in condensed distribution string repeated for subareas Closed Actions
  cdm-vaadin 9 Collapse all/Expand all
9485 TaxonNamePopupEditor: StackOverflow on selecting ICN reference Closed Actions
9483 LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank Closed Actions
9482 NameTypeDesignationEditor: designationReference --> new causes LIE Closed Actions
9480 SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit Closed Actions
9479 ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup Closed Actions
9478 required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation Closed Actions
9476 SpecimenTypeDesignations for existing names in other nom acts can not be created Closed Actions
9475 NameTypeDesignations for existing names in other nom acts can not be created Closed Actions
8981 Improve NameStatus in UI Closed Actions
  cdmlib 9 Collapse all/Expand all
9521 Fallback areas in textual representation should always stand alone Closed Actions
9481 ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset Closed Actions
9470 CollectionDTO constructor prevent from circles Closed Actions
9451 Cache strategy for classifications is missing Closed Actions
8858 Ordering of distribution status 'undefined' is not correct in E+M Closed Actions
8297 Fix condensed distribution string for E+M Closed Actions
5779 Update EuroPlusMedCondensedDistributionComposer to use new symbol field Closed Actions
5682 Implement condensed distribution string for Cuba Closed Actions
5050 revise the subAreaPreference rule for filtering Distributions Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
9509 IIIF manifest includes media source information Closed Actions
  taxeditor 20 Collapse all/Expand all
9525 Namerelationship source label is missing sometimes Closed Actions
9520 Taxonnode parent merge cascade leads to non-transactional behavior Closed Actions
9512 Descriptions being created for individual associations in matrix should have description status "Individual association" Closed Actions
9506 Rights can not be selected for reuse Closed Actions
9499 Make isAbsent editable in DetailsView Closed Actions
9491 Order of terms in not order relevant trees Closed Actions
9488 Show details of description in character matrix Closed Actions
9472 Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading Closed Actions
9471 Widget is disposed exception when switching away from media before details view is completely loaded Closed Actions
9467 AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select Closed Actions
9466 Termselection preference pages do not check the elements Closed Actions
9465 Open in ... NameEditor for orphan taxa results in CCE Closed Actions
9427 Code cleaning in CdmPreferenceCache Closed Actions
9374 ClassCastException when switching between media Closed Actions
9340 Workflow support for secundum handling when making synonym a new accepted taxon Closed Actions
8767 Workflow support for publish flag Closed Actions
8198 Deleting an image gallery from image gallery view shows wrong configuration dialog Closed Actions
7521 refresh of taxonnavigator sometimes does not work for moving taxonnodes Closed Actions
7091 Add uri field and abbreviatedText to Righs in supplemental data Closed Actions
5670 Refresh of Taxon Navigator Closed Actions

CDM Platform 5.20 (released Feb 10th, 2021)

Issues: 17

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Library
    • support for pollen, leafs, and trichomes as tissue samples
    • fix formatting for taxa for taxa with secundum detail information
    • formatting for DNA Sample
    • bugfixes
    • role to allow setting the publish flag added
  • - Data Portal
    • bugfix related to missing source references of distribution data if aggregated data is involved
  • - TaxEditor
    • if a new synonym is added the publish flag now gets the same value as the accepted taxon
    • bugfix for the reference select dialog
  • - Web editor
    • Phycobank registration UI
      • designation refences for name and specimen type can now be edited
    • Distribution editor
      • fix exception when using textual taxon filter

# Subject Status
  cdm 1 Collapse all/Expand all
9434 Add pollen, leaf and trichomes to tissue sample kind-of-unit vocabulary Closed Actions
  cdm-dataportal 1 Collapse all/Expand all
9143 Distribution data sources are missing if multiple distributions exist Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
9461 Filter in vaadin distribution editor does not work Resolved Actions
9324 Enable designation reference editing in name type designation Closed Actions
9301 SpecimenTypeDesignationEditor: Add fields for citation and citationDetail Closed Actions
9290 stop setting Registration.citation as citation for TypeDesignations in all type editors by default Closed Actions
8975 Name Status filtered in UI Closed Actions
8522 Make type status mandatory in Name type designation editor Closed Actions
  cdmlib 4 Collapse all/Expand all
9457 Distribution editor: Taxon filter broken due to invalid HQL in TaxonNodeServiceImpl.getUuidAndTitleCache() Closed Actions
9429 Taxon cache strategy handles sec details 2x in some cases Closed Actions
7529 Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH Closed Actions
5095 Fix failing dozer related tests Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
6324 fix dozer mapping after removal of synonym relations and after using TaxonNode Closed Actions
  taxeditor 4 Collapse all/Expand all
9443 Improve handling of TissueSamples and others in SpecimenTreeEditor Closed Actions
9426 Set publish flag for Synonyms in accordance with accepted taxon publish flag Closed Actions
9351 Include new locations for cdmlib-print and cdmlib-remote in jenkins release script Closed Actions
6450 New reference with only the protected titleCache set is not found in reference select dialog Resolved Actions

CDM Platform 5.19 (released Jan 27th, 2021)

Issues: 41

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - CDM Library
    • fix handling of 2 person teams in short citations (author + year)
  • - Data Portal
    • specimen lists further improved (work in progress)
      • Specimens without assigned field unit are now visible in the tree and "compresses" table view
    • remove disabled classifications from advanced search classification filter
  • - TaxEditor
    • show taxon name for references used as nomenclatural references in referencing objects view
    • distribution editor
    • improve sorting (now sorting is equal to sorting in taxon navigator)
    • new taxon dialogue
      • fix ignored publish flag
      • fix handling of reuse taxon in New Taxon dialogue
      • fix exception when reusing a name
    • terms
      • fix copy&paste in term tree editor
      • dirty flag not set when moving a feature in feature tree editor
      • add "open in " menu to context menu in term/term tree editor
      • main menu for term vocabularies and trees refactored and unified
    • details view
    • improve and fix handling of fields covered by (un-)protected caches
      • fix some inconsistencies
      • use light color for indirect protection
      • use various colors if >1 caches are using the field
    • media
      • changes not persisted in media bulk editor
      • missing reference detail in media specimen details view
      • update (unprotected) titlecache in media details view when underlying data is changing
      • fixing multiple bugs in media view
    • agents (person, team, instituion)
      • improve converting person to team handling (especially handling of cache fields)
      • fix duplicate entries in agent search dialogue
    • descriptive data sets navigator ordered alphabetically
    • further bug fixes:
      • fix incorrect state of taxon navigator toggle button which indicates if the taxon navigator jumps to the taxon that has the focus
      • remove area level from distribution label for distribution areas not having a level
      • alphabetic ordering of reference types in dropdown lists
      • exception when saving parsed hybrids in name editor
      • exception when adding specimen to character matrix

# Subject Status
  cdm-dataportal 5 Collapse all/Expand all
9403 cleanup function cdm_related_taxon() from used paramerters and css class attributes Closed Actions
9397 Derivate tree view must show DerivedUnits even if the FieldUnit is missing Closed Actions
9379 exclude disabled classifications from advanced taxon search form Closed Actions
9213 specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists Closed Actions
7704 Dataportal specimen table should be able to show DerivedUnits without a FieldUnit Closed Actions
  cdmlib 8 Collapse all/Expand all
9415 DNA and other Derivatives missing in DerivedUnitDTO Closed Actions
9395 DerivedUnit.collectFieldUnits() and findFieldUnitDTOByAssociatedTaxon() and findByAccessionNumber() in OccurrenceService to return all root units Closed Actions
9389 further improvement and revision of derivative filtering by type and DerivedUnitDTO Closed Actions
9384 DefaultReferenceCacheStrategy.createShortCitation() working not correctly for Teams with two members Closed Actions
9366 Specimen type designation with specimen having only collection name but not collection code does not show collection information Closed Actions
9350 Create new taxonnode ignores the publish flag Closed Actions
9253 revise OccurrenceServiceImpl.findFieldUnitDTO(..) Closed Actions
7612 CacheStrategy for MediaSpecimens Duplicate Actions
  cdmlib-remote 1 Collapse all/Expand all
9387 LazyInitializationException (LIE) in NameController.doGetTypeDesignationsInHomotypicalGroup() Closed Actions
  taxeditor 27 Collapse all/Expand all
9422 Improve performance during Preferences startup Closed Actions
9413 DNA details lable "Ratio of absorbance ..." corrected Closed Actions
9412 Fix reuse existing name in NewTaxonWizard Closed Actions
9405 Fields set to irrelevant for cache should be set by state only Closed Actions
9391 If named area level does not exist remove the level information Closed Actions
9382 For nomenclatural source show taxonname in referencing objects view Closed Actions
9375 Alphabetical order for reference type drop down Closed Actions
9372 in media details view unprotected title cache is not updated when underlying data is changed Closed Actions
9371 Media bulk does not persist data anymore Closed Actions
9369 Reference Detail is missing in MediaSpecimen details view Closed Actions
9365 Reuse taxon does not work in new Taxon dialogue Closed Actions
9360 Parsed hybrids can not be persisted Feedback Actions
9356 Comparison method violates its general contract for SourceComparator and TypeDesignationComparator Closed Actions
9354 Sorting in distribution editor is broken Closed Actions
9353 Copy & Paste creates dirty data in term trees Closed Actions
9346 Adding specimen to character matrix fails sometimes Closed Actions
9344 Datasets in Descriptive Dataset Navigator should be ordered Closed Actions
9338 Restructure term menus Closed Actions
9264 Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button Closed Actions
9208 Move cdmlib-print and cdmib-remote to taxeditor.printpublisher Closed Actions
9142 The Agent search dialog shows duplicated entries Closed Actions
9140 Deleting an image forgets moving operation Resolved Actions
8874 move taxon is reverted when taxon is edited afterwards Resolved Actions
8289 Add "Open in RefObj view" to term editor context menu Closed Actions
7990 Moving a feature via d&d does not make the Feature Tree Editor dirty Closed Actions
7711 Bugs in media gallery Resolved Actions
5163 Converting persons to team members may result in "-empty team-" Closed Actions

CDM Platform 5.18 (released Dec 3rd, 2020)

Issues: 83

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Model
    • "single sources"
      • some data that refer to a single source only are now handled as full sources (before it was only a reference and a reference detail), with possibility to add further information like name used in source and external links;
      • protologues/original publications handled as external link for the nomenclatural source
      • original spelling handlied as name used in source of nomenclatural source now (before it was a name relationship)
    • added new nomenclatural status "comb. ined", protected, in sched., pro syn., orth. var. (as status)
    • labels updated for "is blocking name for" and "is isonym of", is correct spelling for, is earlier isonym of, conservation designated ; abbreviations updated for op. utique oppr., orth. cons., orth. cons. prop.
    • abbreviations added for "Flowering Period" (Fl.) and "Fruiting Period" (Fr.)
    • add [m] as predefined default measurement unit for altitude
    • improved handling of nomenclatural standing of a taxon name
  • - CDM Library
    • improve formatting with citation detail
    • improved type designation formatting
    • cloning of taxonomic subtrees (not yet available in TaxEditor)
      • more configurable
      • cloning of subtrees, not only classifications, possible
    • major upgrade of third party code
  • - Data Portal
    • specimen lists and pages fully refactored and improved (work in progress)
    • map serives improved
    • adapt sort order of taxon tree to sort order in TaxEditor
    • display of name facts improved
    • new base font size
    • improved rendering of footnotes
    • fix missing nomenclatural status on name pages and registration pages
  • - Exports
    • Several major and minor issues fixed in cdmlight export (#9262, #9256)
    • less cryptic default name for cdmlight export file
  • - TaxEditor
    • "Single Sources"
      • objects with single sources (like taxon name nomenclatural source or name relationship source, etc.) are handled as full sources now including "Name in source", "original Information", "external links" etc.
      • protologues/original publications were moved to the new nomenclatural source section as external link for the nomenclatural source
      • original spelling now available in nomenclatural source section
    • term tree (hierarchy) editors and character editors fully refactored and many bugs fixed, also preferences for term tree display added
    • reduce download size and preparation for further reducing download size
    • remove incorrect "invalid designation" handling
    • assist for secundum handling when making a synonym an accepted taxon
    • add LSIDs to persons and references
    • improve default reference type for in-reference creation dialogue (depending of the original reference type), e.g. journal for articles
    • bug fixes:
      • missing dropdown list if no rank was selected yet in name details view
      • adding derived units to derived units (e.g. DNA sample to specimen) is possile again in specimen tree editor
      • error in LSID handling
  • - Web editor (Phycobank registration UI)
    • annotations for names and field units visible
    • #8859

# Subject Status
  cdm 15 Collapse all/Expand all
9311 Update some (abbrev) labels for nomenclatural status types Closed Actions
9282 Add nomenclatural standing Closed Actions
9272 Add missing nomenclatural status Closed Actions
9263 Unify case for type designation status Closed Actions
9225 Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass Closed Actions
9124 Altitude feature should have [m] as measurement unit by default Closed Actions
9121 Add abbreviations to Feature Closed Actions
9120 Update script for flowering period supports temporal data Closed Actions
9094 Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource Closed Actions
9062 Remove StatisticalMeasurementValue.value_old Closed Actions
8326 update labels for is blocking name and is isonym Closed Actions
6591 Use name used in source for original spelling Closed Actions
6589 Handle protologue as original source with URI link Closed Actions
6581 Make all microreferenced references OriginalSources Closed Actions
5795 [DISCUSS] Do we need comb. ined. as a nomenclatural status? Closed Actions
  cdm-dataportal 19 Collapse all/Expand all
9306 Registration result list: supress "designated by" reference in portal Closed Actions
9265 Adapt dataportal to new protologue handling Closed Actions
9261 LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes() Closed Actions
9260 error in pages.inc calling compose_taxon_node_status() Closed Actions
9249 compact display of collection information Closed Actions
9240 nomenclatural status missing in name and registration page Closed Actions
9235 Footnote key for multiple cdm entities need to be rendered together Closed Actions
9234 Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry() Closed Actions
9224 openlayers map handles server error per layer and presents a user message Closed Actions
9222 Adapt dataportal to switch to originalSource for remaining single sourced classes Closed Actions
9220 adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability Closed Actions
9209 name page, registration page: show annotations for names and fieldunits Closed Actions
9184 WSOD in advanced search cdm_dataportal/search Closed Actions
8854 Choose new base font size for the portal Closed Actions
8851 display of name facts not appropriate in all cases Closed Actions
8379 Review strange specimen implementations Closed Actions
7685 Add Selenium tests for specimen table in data portal Closed Actions
6356 taxontree sort order as in editor Closed Actions
3978 Specimenview path: Compact representation of exactLocation Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
9318 TaxonNameEditor: nomenclatural reference no longer selectable Closed Actions
9313 LazyInitializationException (LIE) in TaxonNamePopupEditor Closed Actions
9289 LazyInitializationException (LIE) in NameTypeDesignationEditor Closed Actions
9229 TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName Closed Actions
8859 RegistrationItemNameAndTypeButtons invalid regex pattern Closed Actions
7936 Consider complete removal of redmine communication hub code Closed Actions
  cdmadapter 2 Collapse all/Expand all
9262 Several open issues for cdmlight export related to Cactaceae and other Caryophallales Closed Actions
9256 CdmLightExport: NameTypeDesignation string misses parenthesis for authors Closed Actions
  cdmlib 19 Collapse all/Expand all
9322 Remove invalid designation taxon relationship Closed Actions
9280 Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel() Closed Actions
9279 Improve type designation formatting and TypeDesignationSetManager Closed Actions
9267 No sec reference for move change Synonym to accepted Taxon Closed Actions
9258 Use Partial for date in FieldUnitDTO Closed Actions
9257 revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen Closed Actions
9252 Harmonize SpecimenOrOberservationBase related DTOs Closed Actions
9230 Type in preparation of a published name displayed in PhycoBank Portal Name Page Closed Actions
9223 make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess Resolved Actions
9210 invalid format string usage in MediaAutoInitializer Closed Actions
9206 Solve cglib vs. cglib-nodep Closed Actions
9204 Update cdmlib and taxeditor dependencies Closed Actions
9194 Make RelationshipBase and NomenclaturalStatus reference OriginalSource Closed Actions
9103 missing exception handling in TaxoNodeDto Closed Actions
8458 document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO() Closed Actions
7862 Improve documentation on TaxonGraphHibernateListener and related classes Closed Actions
6623 formatter for bibliografic citations with citationDetail Closed Actions
5794 Move other invalid names to the end Closed Actions
4866 Implement clone method for complete classifications Closed Actions
  cdmlib-remote 7 Collapse all/Expand all
9335 termTree webservice response misses titleCache Closed Actions
9259 reduce fields in TermBase json serializations Closed Actions
9254 portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception Closed Actions
9238 pure entities in DerivateDTO.derivates may cause LIEs Closed Actions
9218 Change /registrationDTO/identifier/... signatures to use query parameters instead Closed Actions
9134 Rule based creation of additional media representations "on the fly" Closed Actions
8423 OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives Closed Actions
  data 1 Collapse all/Expand all
9082 Update script for old empty Partials handling Closed Actions
  devOps 1 Collapse all/Expand all
8635 install collectd + facette for server monitoring Closed Actions
  taxeditor 13 Collapse all/Expand all
9307 Preferences for display of termtrees and entries Closed Actions
9299 Add LSID to author and reference details Closed Actions
9297 Improve name of zip file for cdmLightExport Closed Actions
9286 Re-connect and change user should be disabled if no datasource is connected yet Closed Actions
9266 Remove protologue section from TaxEditor Closed Actions
9215 Drop down for empty rank does not work Closed Actions
9199 Adapt TaxEditor to switch to originalSource for remaining single sourced objects Closed Actions
9192 Layout issues for source in taxonnode details Closed Actions
9189 Move datasource view to taxeditor.local Closed Actions
8928 Swap menu entries for specimen bulk editors Closed Actions
8774 Reimplement term tree editors to implement the general save strategy Closed Actions
8547 Default type of a newly created inReference should depend on the type of the reference Closed Actions
6947 Incorrect error for LSID field Closed Actions

CDM Platform 5.17 (released Aug 19th, 2020)

Issues: 42

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Portal
    • image viewer
      • improved thumbnail handling
      • automated creation of thumbnail URLs (avoids that always 2 or 3 versions of the image have to be stored in the database)
      • improved image meta data handling
    • possible default copyright statement below image viewer
    • improve handling of annotations and other footnotes like sources
      • some more annotations and sources are shown now
    • improved map representation for TDWG area maps
    • occurrence maps hidden if no data exists
    • fix bug that misapplied name taxa are not shown and not found in search
    • fix bug that placemark icons are not clickable in map
    • improve test system
  • - CDM Library
    • fix https handling for images
  • - Web Services
    • fix bug in taxon service that misapplied name taxa return no result
  • - TaxEditor
    • reduce download size (by >100MB)
    • make specimen media editable in specimen assistants and in specimen list editor details view (to improve workflow when editing e.g. type specimen)
    • find doubtful taxa without having "?" at beginning of search string
    • new layout for taxon node dialogue
    • additional parameters editable for taxon node placement source
    • move update site to https
    • open in browser button for ORCIDS
    • bugfixes
      • when moving synonym into homotypical group of accepted taxon
      • missing synchronization between taxon node dialogue and name editor
      • problems with name fact preferences
      • exception when editing data in bulk editor
  • - Web editor (Phycobank registration UI)
    • Collection editor extended by name filed
    • Improved authorship inferrence redarding ex-authorship
    • NameTypePopupEditor: Genus can be selectable as the name type for higher ranks
    • Registration items show type status in bold letters

# Subject Status
  cdm-dataportal 14 Collapse all/Expand all
9191 selenium test for specimen tree view (bottom up) Closed Actions
9188 selenium web element wrapper for dynabox Closed Actions
9186 selenium test for specimen top down view (aka devivate_path view) Closed Actions
9181 set and get drupal variables from selenium test suite Closed Actions
9175 hide occurrence map when no data exists Closed Actions
9137 IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet Closed Actions
9128 Default copyright statement below image viewer Closed Actions
9109 Search button font icon broken Closed Actions
9099 placemark icon in kml map not clickable Closed Actions
8850 Show annotations for DerivedUnits (Fieldunits etc) in Registration and other pages Closed Actions
8543 overcome distinction of annotation and other foonotes Closed Actions
8420 improve admin settings for specimens representations Closed Actions
4372 Selenium PortalPage class also suitable for zen-basetheme Closed Actions
2489 strategy for congruent areas in distribution maps: create merged TDWG layer with all levels Closed Actions
  cdm-vaadin 4 Collapse all/Expand all
9182 Sub-collection and Collection vs. Collection and Super-Collection Closed Actions
8317 Omit ex-author if ex-author=author Closed Actions
8230 NameTypePopupEditor: genus selectable as the name type for higher ranks Closed Actions
8156 Registration items show type status in bold letters Closed Actions
  cdmadapter 1 Collapse all/Expand all
9110 Add additional informations to metadata table of cdmLight Feedback Actions
  cdmlib 7 Collapse all/Expand all
9152 PreferencesService caches CdmPreferences Closed Actions
9148 Replace sanselan library by the newer apache commons-imaging Closed Actions
9147 Use StringBuilder in CdmUtils.concat() to avoid performance penalties Closed Actions
9146 filter image metadata by include and exclude lists of key words Closed Actions
9129 cdm property to store a default copyright statement for media items Closed Actions
9105 rename NodeSortMode etc to TaxonNodeSortMode Closed Actions
9000 UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
9198 option in iiif manifest creation to set canvas size to thumbnail size Closed Actions
9193 LazyInitializationException (LIE) in portal/taxon/{uuid} web service Closed Actions
9087 typedesignation/{uuid}/annotations must return pager objects Closed Actions
  geotools - map service 1 Collapse all/Expand all
8310 Issues to solve in E+M shapefile Closed Actions
  taxeditor 12 Collapse all/Expand all
9173 NPE when move synonym into homotypical group of accepted Closed Actions
9172 Missing synchronisation between taxonnode wizard and name editor Closed Actions
9171 Doubtful taxa are not found in bulkeditor Closed Actions
9168 NameFeature selection in preferences are not shown Closed Actions
9166 ClassCastException when editing media in taxon bulkeditor Closed Actions
9138 Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId() Closed Actions
9119 Remove schema create and schema update functionality from datsource view Closed Actions
9118 Change p2 update site to https in Taxeditor Closed Actions
9116 Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue Closed Actions
9065 Add derived unit media to DerivedUnitFacade details view Closed Actions
9040 Implement open button for ORCIDs Closed Actions
5752 Reduce TaxEditor size Closed Actions

CDM Platform 5.16 (released June 30th, 2020)

Issues: 14

Downloads: TaxEditor, CDM Server, Data Portal

What is new?

  • - Data Portal
    • Fix for sortorder of taxon nodes in taxon tree
    • Fix for incorrect link for geo-coordinates in point maps
    • Fix for missing information on taxon pages (see #9095)
  • - CDM Library
    • Improved deduplication of references and authors during name parsing (the relatively empty parsed references and authors are now merged with richer references and authors, which include e.g. also URI, ISBN, lifespan, first name, etc. information)
    • Improved caching mechanism (which hopefully leads to less multiple representation exceptions in TaxEditor)
    • Improved formatting and parsing of dates and periods (now we generally use a format like "30 Jun 2020" which is more language independent)
  • - TaxEditor
    • Setting focus automatically to newly created facts in Fact View
    • Improved reference and author deduplication during creation of new taxa and synonyms
    • Improved handling of malformed URIs
    • Fix bug which threw multiple representation exceptions when editing taxa with a taxon node source (which exists very often in some databases)
    • Fix bug throwing an exception when deleting a classification
    • Fix bug throwing an exception when deleting multiple records in bulk editor

CDM Platform 5.15 (released June 23rd, 2020)

Issues: 83

Downloads: TaxEditor, CDM Server, Data Portal

What will be new?

  • - Data Model
    • TaxonNode has a "status" attribute now instead of flags "doubtful", "unplaced" and "excluded"
      • Allows to use only max. 1 of the above status for the same node
      • "Excluded Notes" changed to => "Status notes" and is valid for what ever status has been chosen
    • Measurement values handled as "BigDecimal" to avoid rounding errors related to floating point algebra and to allow to handle exactness (e.g. 1.6 differs from 1.60)
    • "Available for" attribute for features to distinguish if features are available for taxa, for names and/or for specimen
    • Temporal fact datatype for e.g. flowering periods supporting time periods like (Apr-)May-July(-Aug)
    • New feature "Flowering period"
    • New feature "Altitude" added
    • Rename "later homonym for" to "later homonym of"#
    • "Links" added to main classes like taxa, names, references, authors, ... - these allow adding an unlimited number of URL-links to these objects together with a description what this link is for
    • Key-Value structure for storing media metadata (not yet used)
  • - Data Portal
    • New implementation of the occurrence point display is maps which allows new important features:
      • Field unit information can now be shown.
      • Display of error radius
      • NOTE: More exciting features will come with the following releases.
    • The new image viewer which has been integrated into the dataportal with version 5.13 is now stable and available for all data portal installations. The new image viewer uses the iiif conform Universalviewer. The new viewer adapts to different screen sizes and supports mobile devices.
    • The beautiful Noto font family is now the default for the data portal and brings improved readability and excellent unicode support.
    • The status (unplaced, doubtful, excluded) of a taxon node is now shown on taxon pages and in the classification tree.
  • - CDM Server
    • Improved logging
    • Debian installation package improved
  • - CDM Library
    • Improved permissions for users being allowed to edit all taxonomies
  • - TaxEditor
    • Improved deduplication, especially for taxa entered via taxon node editor
    • Persons: allow editing lifespan
    • Possibility to create or update database schema via connect dialog
    • Improved layout of connect dialog
    • Taxon nodes status with status notes (see Data Model), available in taxon node wizard and in CDM light export
    • Factual Data:
      • Possibility to enter temporal data (phenology)
      • Factual dataset source is shown as (uneditable) source for each fact
      • Facts view: remember expansion state after deleting
      • Remove caching form facts view which (resulted in unexpected results)
    • Descriptive dataset editor and matrix editor:
      • Improve performance of matrix editor
      • Add context menu to matrix editor (and remove preliminary buttons)
      • Fix failing adding of specimen which are not attached to a field unit
      • Remove taxon in descriptive dataset editor only available if taxon has focus
      • Fix bug when selecting a character tree for a descriptive dataset
    • Reference bulk editor table has new included columns: year, in-reference, uri
    • Open link button for entering DOIs in reference details view
    • Features:
      • Possibility to define if a feature is available for taxa, specimen and/or taxon names
    • Improved decimal/rounding handling of quantitative data (e.g. distinguish 9.1 form 9.10)
    • Configurable if the old specimen list editor should be avialable via main menu
    • Bug fixes:
      • Broken media deatils view fixed for "MediaSpecimen"
      • Exception when creating a new taxon
      • Search does find orphaned synonyms now
      • Term search fixed
      • Exception in referencing objects view for TextualTypeDesignations
      • Exception in name details view if name relations were incomplete (no type, no from-name or no to-name)
      • Exception when deleting a descriptive dataset
      • Incorrect context menu for synonyms after moving a synonym into or out of the homotypic group
      • Opened selection dialogs lock editing in other windows
      • Remember expansions state of sections in details view and supplemental data view (this feature was lost for some time)
      • Recently used references list is not emptied anymore after using search dialog for nomenclatural reference
      • Bulk editor: multiple deduplications without saving do now remember all deduplications
      • Some widget is disposed exceptions fixed
      • fix verbatime date not persisted for books

# Subject Status
  cdm 13 Collapse all/Expand all
9043 Add feature "Altitude" Closed Actions
9037 Remove old Feature.supportedXXX columns Closed Actions
9036 Remove old TaxonNode.unplaced/doubtful/excluded columns Closed Actions
9009 Add structure to store media metadata Closed Actions
9005 Make the TaxonNode flags alternatives and change excluded notes to status notes Closed Actions
9004 Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source Closed Actions
8991 Add feature "Flowering Period" Closed Actions
8964 Improve label for homonym relationships Closed Actions
8802 Implement flowering period for Flora of Cyprus Closed Actions
9064 Add ExternalLinks to IdentifiableEntities Closed Actions
9027 Implement Feature.availableFor Closed Actions
9026 Implement Feature.supportedDataTypes as EnumSet Closed Actions
8978 Implement measurement values as BigDecimal Closed Actions
  cdm-dataportal 13 Collapse all/Expand all
9034 simple agent list page with filter function Closed Actions
9010 Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page Closed Actions
8994 universal image viewer fails loading libs when clean urls is disabled Closed Actions
8972 integrate kml layers into map viewer Closed Actions
8900 Layout issues with new image viewer Closed Actions
8888 responsive width for universal viewer Closed Actions
8855 Show error radius in EDIT portal Closed Actions
8134 Implement verbatim type information in dataportal Closed Actions
6878 choose a base font for the portal and deliver it from the drupal module or theme Closed Actions
4488 Specimen data points in map should show FieldUnit information Closed Actions
4257 specimen map should zoom to area of distribution Closed Actions
9076 synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off Closed Actions
8196 display ortographic corrections in name relations as 'corrected name: <nameCache>' Closed Actions
  cdmadapter 2 Collapse all/Expand all
8998 Terms created by abcd import should always be part of a vocabulary Resolved Actions
9031 Adapt CdmLightExport to new TaxonNode.status Closed Actions
  cdmlib 5 Collapse all/Expand all
9058 Hibernate loggs error when creating schema on MySQL due to failing index creation Closed Actions
9047 Search does not return orphaned synonyms Closed Actions
9020 add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE]) Closed Actions
9081 Handle empty Partials correctly Closed Actions
8986 use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
9044 TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms Closed Actions
9023 option to start cdm webapp with hibernate.hbm2ddl.auto = create Closed Actions
6113 webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML Closed Actions
  cdmserver 3 Collapse all/Expand all
7085 cdmserver logfiles getting too big, use RollingFileAppender Closed Actions
3683 add /etc/default/cdmserver to debian package Closed Actions
8682 cdm-server debian packages configured for jemalloc Closed Actions
  data 1 Collapse all/Expand all
9017 Update image link for FoG Willing images Resolved Actions
  taxeditor 43 Collapse all/Expand all
9055 Relabel "Type Designation" to "Type Information" Feedback Actions
9084 Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon Resolved Actions
8785 Move functionality of buttons to context menu of the character matrix Resolved Actions
9063 Detailsview for MediaSpecimen broken Closed Actions
9053 CCE when selecting Character Tree for descriptive dataset Closed Actions
9045 TextualTypeDesignation throws exception in referencing objects view Closed Actions
9033 Adapt TaxEditor to new TaxonNode.status Closed Actions
9029 Adapt character matrix to using dtos instead of whole cdm entities Closed Actions
9025 allow for creating a new schema in empty dbs via the remote login dialog Closed Actions
9022 Implement lifespan for Person Details View Closed Actions
8999 Verbatim date not persisted for books Closed Actions
8990 Implement flowering periods (temporal facts) in TaxEditor Closed Actions
8988 Add link button to DOI field for references Closed Actions
8969 Multiple deduplications are not executed Closed Actions
8963 Selection dialogues should be modal Closed Actions
8961 Using the selection dialogue for nomenclatural references removes the recently used list Closed Actions
8959 Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon Closed Actions
8958 Add publication year, inReference (journal), and URI to reference bulk editor Closed Actions
8931 Taxeditor supports https Closed Actions
8903 Remember expansion state in factual data view Closed Actions
8857 NonUniqueObjectException when creating new taxon Closed Actions
8849 NPE in synonym DetailsViewer for synonyms without accepted taxon Closed Actions
8662 "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected Closed Actions
7774 Show description source for description elements Closed Actions
7189 Taxeditor connect dialog high-dpi suport Closed Actions
8901 Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself Resolved Actions
8754 DescriptionElements are not deleted with the Descriptive Data Set Resolved Actions
9070 Adapt preference page to feature.isAvailableFor... Closed Actions
9066 Make visiblity of Specimen List Editor menu configurable Closed Actions
9060 NPE in termsearch Closed Actions
9059 Cancel taxon save does not clean the (factual data) cache Closed Actions
9052 NPE in name details view for incomplete name relationships Closed Actions
9038 Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues Closed Actions
9032 Implement Feature.availableFor in TaxEditor Closed Actions
9016 Adding specimen without field unit fails Closed Actions
9013 Problems in TaxonNode Dialog Closed Actions
8962 Handle widget is disposed after closing Supplemental Data View Closed Actions
8957 Rename "unexpected error" to "unhandled error" Closed Actions
8954 Details and Supplemental Data View do not save the expansion state of sections again Closed Actions
8783 Massive Heap consumption in server instance opening the Description-Matrix editor Closed Actions
8753 EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets Closed Actions
8806 Multiple representations problem on saving Desriptive Data Set Worksforme Actions
8752 Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset Worksforme Actions

CDM Platform 5.14 (released April 8th, 2020)

Issues: 28

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Portal
    • Structured descriptive data is shown on specimen page as continous text
    • Bugfix for the new universal media viewer
    • Bugfix for some descriptive data pages for taxon descriptions
  • - Import/Export
    • Handling of descriptions improved for ABCD import
    • Bug fix for CDM lite export of textual type designation missing a language
  • - TaxEditor
    • Set as basionym available also for accepted taxa
    • Distribution details view: configurable to show also abbreviation for selected named areas
    • Performance improved for preference dependend descriptive data matrix editing
    • Cloned descriptions show according icon
    • User/roles/rights: * ROLE_USER_MANAGER is allowed to change passwords * unnecessary "expired" flags removed from User UI * isAdmin valid for all users having ROLE_ADMIN
    • DNA Sample view allows editing of determinations
    • Export dialogue remembers last selected folder
    • Bug fixes:
      • Handling of preferences for term lists fixed
      • ConcurrentModificationException occurring at different places fixed
      • Incorrect handling of "show descriptions only for field units" fixed
      • Missing "id in vocabulary" in term labels fixed
      • Freetext filter for name relationship type selection in name relationship dialogue fixed
      • Exception caused by missing "number of rows in status dropdown" fixed
      • Exception when opening orphaned names in name bulk editor from search result fixed

# Subject Status
  cdm-dataportal 2 Collapse all/Expand all
8914 jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal Closed Actions
8895 Specimen page: show specimen description as continuous text Closed Actions
  cdm-vaadin 1 Collapse all/Expand all
8834 use TaxonNodeDto instead of UuidAndTitleCache Closed Actions
  cdmadapter 1 Collapse all/Expand all
8905 Description Handling in ABCD import Closed Actions
  cdmlib 4 Collapse all/Expand all
8907 replace UuidAndTitleCacheTaxonComparator by type save implementation Resolved Actions
8942 Exception when try to get text of TextualTypeDesignation with language which is not available Closed Actions
8428 NPE in ClassificationServiceImpl.loadTreeBranchToTaxon() Closed Actions
8815 Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8911 LazyInitializationException (LIE) in portal/description/{uuid} Closed Actions
8899 NullPointerException (NPE) in ManifestController Closed Actions
  taxeditor 18 Collapse all/Expand all
8943 Term Preferences are not correctly handled in combo boxes Closed Actions
8927 Fix isAdmin() method in LoginManager Closed Actions
8917 NPE when opening Acacia in Name bulk editor (from search) Closed Actions
8906 Refactor DNA Sample details view Closed Actions
7981 Add configuration UI for matrix description aggregation Closed Actions
8238 Allow interoperability between term trees Feedback Actions
8940 The export wizard does not remember last selected folder Closed Actions
8939 Exception when opening Distribution Editor because of missing Preference Closed Actions
8938 ProposalProvider in NameRelationshiptype combo does not work as expected Closed Actions
8926 Remove 'expired' flags in users details Closed Actions
8925 Users with ROLE_USER_MANAGER must be able to change any user password Closed Actions
8919 Shorten label for "Reference Detail" Closed Actions
8918 Add "set as basionym" to accepted taxon Closed Actions
8913 InInVoc not showing up anymore in TermEditor Closed Actions
8910 Correct handling of preference for determinations Closed Actions
8904 Show "cloned" icon in factual data view Closed Actions
8552 Avoid DB call for matrix state DB preferences Closed Actions
8725 Add abbreviation to namedArea text field in distribution details view Feedback Actions

CDM Platform 5.13 (released March 23th, 2020)

Issues: 47

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Portal
    • A new image viewer for the dataportal is now available. The new image viewer uses the iiif conform Universalviewer.
    • Several bugfixes regarding security and display of structured descriptions etc...
  • - Import/Export
    • DarwinCoreArchive: Categorical and quantitative data added to export
  • - CDM Library
    • Caching of in-references for nomenclatural references: only author's family name (without initials) is used now if available
    • Some improvements to the rights&roles management for editing of references
    • Bugfixes:
      • Names without ranks not found in taxon searches
      • Find best matching (in terms of size) image representation fixed/improved
      • some further bugfixes
  • - TaxEditor
    • Fix for failing connections (this might be the reason for many unclear errors that occurred in the past)
    • MacOS X version fixed (TaxEditor available for MacOS X again)
    • Search in bulk editors now also works on abbreviated title(caches)
    • Some improvements to the distribution editor
    • Some improvements to preference pages
    • Freetext search for all dropdown boxes available now
    • Search result view moved to the bottom of taxon navigator view (as default)
    • Taxon navigator allows open-in for multi-selection for name editor and distribution editor
    • Suggested file name for DwC-A export improved
    • Move-to functionality improved in term editor and term tree editor
    • Bugfixes:
      • Names without ranks not found in search
      • NameInSource only added after moving factual data if requested by the user
      • Measurment units added to quantitative data in descriptive data matrix editor
      • Automatically refresh available-specimen list for descriptive data matrix if descriptive dataset changes
      • Name features not visible in taxon factual data view anymore, but only in name factual data view
      • Inheriting sec-reference for root taxa from classification reference works again
      • Selection list for entering states for categorical data is sorted now
      • Deleting specimen descriptions possible now
      • Fix for deleting name types
  • - Web editor (Phycobank registration UI)
    • Bug fix in reference editor

# Subject Status
  cdm-dataportal 7 Collapse all/Expand all
8945 support statistical value type ExactValue (29736701-58c4-48b3-a9d7-41c74140cac7) Resolved Actions
8845 external links: GGBN not shoing up in admin section Closed Actions
8830 add missing spaces to statistical value representations Closed Actions
8828 statistical values must not show empty brackets Closed Actions
8328 Unpublished record visible in Portal if related name is published Closed Actions
7766 Remaining issues for using relationship DTO webservice in portal Closed Actions
5083 Alternative image viewer for dataportal Closed Actions
  cdm-vaadin 1 Collapse all/Expand all
8548 ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis) Closed Actions
  cdmadapter 1 Collapse all/Expand all
8891 Add categorical and quantiative data to DwC-A Closed Actions
  cdmlib 9 Collapse all/Expand all
8892 Taxon search does not work for names without rank Closed Actions
8881 Use pure last names (without initials) for in-references of taxon names Closed Actions
8868 Bump Jackson dependencies to >= 2.9.10.1 Closed Actions
8836 add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERSONBASE.[UPDATE,DELETE]) Closed Actions
8829 NullPointerException (NPE) in TaxonNodeService Closed Actions
8782 Delete a description included in a CdmSource should not be possible Closed Actions
6970 MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations over full sized Closed Actions
8839 Role misses toString method Closed Actions
5022 Check for dependencies from codehaus.org Closed Actions
  cdmlib-remote 3 Collapse all/Expand all
8867 media list services as iiif manifest service Closed Actions
8866 LazyInitializationException (LIE) in portal/taxon/{uuid} Closed Actions
8427 LazyInitializationException in NameController.doGetTaggedFullTitle() Closed Actions
  taxeditor 26 Collapse all/Expand all
8848 Search fails with low data rate network (64kbit/s) network connection due to lost authentication Feedback Actions
8842 CdmServiceRequestExecutor is not stateleass and neither thread save nor access synchronized Resolved Actions
8812 Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...) Resolved Actions
8897 [Mac] Jre Taxeditor fails to start in MacOS X Closed Actions
8890 Allow multiselection for open_in menu Closed Actions
8873 eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and deletes the eu.etaxonomy.taxeditor/target/repository/plugins/org.eclipse.*.jar files Closed Actions
8847 Name in Source is added always when moving description from one taxon to another Closed Actions
8791 Measurement units are not assigned to quantitative data in matrix Closed Actions
8624 Add abbrev title cache to search in bulk editor Closed Actions
8047 Remaining issues in TaxDistributionEditor Closed Actions
6036 Problems with deleting type names Closed Actions
8562 Remaining issues for preference pages Feedback Actions
8832 Choosing the area for distribution in details view clears the selected status Resolved Actions
8879 strange file name for export file Closed Actions
8862 move search result to the bottom of the navigator part Closed Actions
8861 Sorted feature states Closed Actions
8860 Sec reference not inherited from classification anymore Closed Actions
8844 distinguish SocketTimeoutException from ConnectException Closed Actions
8825 Name features are shown in menu of factual data view of taxa when no preferences defined Closed Actions
8733 Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor Closed Actions
8721 Use webservice to get all biocase provider listed by gbif Closed Actions
8688 Make OriginalSourceBase.cdmSource visible in TaxEditor Closed Actions
8749 Add proposalProvider to AbstractComboElement Closed Actions
8531 factual data and media view always opened when opening taxon Closed Actions
8784 Deleting a specimen description not possible Closed Actions
8044 Add "Move to..." menu to term editor Closed Actions

CDM Platform 5.12 (released Jan 20th, 2020)

Issues: 67

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • Added "per mm²" to measurement units
    • Allow linking to CDM taxa as information source (currently only available for algorithms, not (yet) for editing in TaxEditor)
  • - Data Portal
    • Structured Descriptions
      • Show structure descriptions in general page as pseudo feature block (position configurable)
      • Implement explicit page for descriptions, using dataset character/feature tree (or general feature tree) for ordering
      • Order states by frequency
      • Improve display of average values (and other statistical vlaues) and single values
      • Support for linking to other CDM records as information source (for aggregated desciptions)
    • Show type designations for synonyms
    • Improved handling for URLs linking to not existing/deleted records (e.g. deleted polytomous keys)
  • - Import/Export
    • CDM light:
      • Typification column added to name and homotypical group files
      • Handling of name identifiers fixed
  • - CDM Library
    • Algorithms for descriptive data aggregation (distributions/structured descriptive data) fixed/improved
    • Polynomous key generation algorithm improved
    • Fix bug for deleting a taxon used in 2 different classifications
    • Fix repair term tree sortindex
    • Allow distribution aggregation to run on taxonomic subtrees
  • - Documentation
  • - TaxEditor
    • Documentation: see above
    • Editing of structured descriptive data now available as standard feature (was experimental before) * Character editor * Term search * Matrix editor * GFBio and ontology imports * Support for "allow duplicates" for term collections * Note: however there are still issues especially with the Character editor which hopefully will be fixed in the next version (we recommend to contact the EDIT team before using this feature)
    • Distribution aggregation available in taxon navigator
    • Added freetext filter to combo boxes
    • Links to other CDM records as information sources visible (but not editable)
    • "Move to ..." added to term editor
    • Improved handling for different term tree types (ordered, flat, distinct, ...)
    • Specimen import: list of existing BioCase endpoints available as dropdown
    • Fix multiple bugs related to BioCase specimen import
    • Fix collapsing tree bug when moving taxa in taxon navigator
    • Fix bug that reference search dialog does not open under certain conditions

# Subject Status
  cdm 5 Collapse all/Expand all
8803 Add "per mm²" to measurement units Closed Actions
8468 Remove old InapplicableIf tables Closed Actions
8738 CdmLink.startPos and .endPos should allow Null Closed Actions
8724 Allow OriginalSource to link to Taxon Closed Actions
8702 Remove Not null constraint for uuid in AUD tables Closed Actions
  cdm-dataportal 19 Collapse all/Expand all
8786 Display of mean value with min max Resolved Actions
8771 display of average value with precision so that it differs from min and max by one digit Resolved Actions
8765 defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description" Resolved Actions
8781 Descriptions (aggregated): futher improvements Closed Actions
8779 Description page: use render_taxon_or_name() for creating the page and description title and taxon links Closed Actions
8758 Aggregated Descriptions: order states by frequency Closed Actions
8745 Type designations of synonyms missing on specimen page Closed Actions
8739 remaining issues for description detail page Closed Actions
8719 installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null Closed Actions
8718 polytomousKey page: better handling of invalid uuids Closed Actions
8686 Support CdmLink sources in bibliography Closed Actions
8798 description page: Show character hierarchy Resolved Actions
8787 Improve layout for ExactValue on Description Pages Resolved Actions
8759 Description aggregation : suppress state present when more details are available Resolved Actions
8714 description page: Show multiple datasets per description as list of links Resolved Actions
8807 description page: Adapt table header to the nature of description elements Closed Actions
8766 Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE] Closed Actions
8657 Order description element in portal according to CharacterTree Closed Actions
8595 Create description detail page Closed Actions
  cdmadapter 3 Collapse all/Expand all
8808 Cdm-Light Export fix name identifier export Closed Actions
8299 add typification column to scientific name and homotypical group in cdm light Closed Actions
8809 CdmLight Export area without level results in NPE Closed Actions
  cdmlib 13 Collapse all/Expand all
8788 Cloned descriptions do not show up in dataportal anymore Feedback Actions
8737 delete taxon included in two classifications deletes taxonname Closed Actions
8684 ITaxonService.findTaxaByName misses initStrategy Parameter Closed Actions
8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache Closed Actions
8670 Unwanted distribution aggregation/display on 2 levels Closed Actions
8472 Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types Closed Actions
8467 Save a "snapshot" of the SpecimenDescriptions used for aggregation Closed Actions
6629 TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels Closed Actions
4134 Transmissionengine Distribution seems to miss distributions for higher Taxa Closed Actions
8780 Repair sortindex does not work on TermTree index Closed Actions
8679 Further unify description aggregation methods Closed Actions
8713 Improve structured descriptive data aggregation Closed Actions
5176 TransmissionEngineDistribution can run on selected taxa Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8770 NameControllers responds with all entities when name uuid is not found Closed Actions
  taxeditor 26 Collapse all/Expand all
8810 In taxeditor parts without permissions should be disabled Closed Actions
8805 In distribution editor synoms should be available as concatenated String Closed Actions
8797 Navigator tree collapse after moving taxon node Closed Actions
8731 BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results Closed Actions
8677 Add distribution aggregation to set subtree menu Closed Actions
8801 Deselected menu items are not reactivated in navigator Closed Actions
8800 If supplemental data view shows reference it is not possible to select another reference Closed Actions
8757 ArrayIndexOutOfBoundsException in term combo Closed Actions
8755 Show all structure/property trees in CharacterEditor Closed Actions
8748 Supported state vocabularies should be ordered Closed Actions
8744 LazyInitializationException (LIE) saving the Character Editor Closed Actions
8736 LazyInitializationException (LIE) during adding Specimens to Matrix Editor Closed Actions
8706 taxeditor error report with timestamps Closed Actions
8703 Move TermSearch and Specimen(Import)Search to editor area of taxeditor Closed Actions
8694 Specimen online import - Specimen Search: import button layout problem on linux KDE Closed Actions
8665 Rename "New" to "New Tree" in Term Tree editors Closed Actions
8661 "New DataSet" should ask for label and then open the dataset Closed Actions
8645 rename menu item General > Import > "OWL Import" to "Term Tree OWL Import" Closed Actions
8511 The structure path in the character details view should have a line break Closed Actions
8477 Implement support for TermCollection.allowDuplicates in TaxEditor Closed Actions
8474 Make TermCollection.orderRelevant usable for TermTrees Closed Actions
8313 Multiple categorical data get deleted when clicked on in Character Matrix Closed Actions
8242 Implement filtered combo boxes for state selection in CharacterMatrix Closed Actions
8732 Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor Duplicate Actions
8656 [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix? Closed Actions
8716 Configure taxeditor to run with GTK2 in linux Closed Actions

CDM Platform 5.11 (released Nov 15th, 2019)

Issues: 39

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Model
    • Added count parameter for statics during data aggregation of categorical (structured descriptive) data
    • Added ORCID identifier to persons
    • Added CDM source links (sources may link to other information in the same CDM instance)
  • - Data Portal
    • Fixed polytomous key display for key parts linked from multiple places
    • Fix label formatting for specimen with missing collection identifier in specimen tables
    • Fixing problem with names having multiple nomenclatural status
  • - Import/Export
    • ABCD:
      • Fix collector and field number handling for derived units missing this data (but available in field unit record)
  • - CDM Library
    • Better parsing for infrageneric autonyms with authors
    • Imporved distribution and descriptive data aggregation
  • - CDM Server
    • Fix memory leaks
  • - TaxEditor
    • Taxon search: new filter to search only for published taxa
    • Terms:
      • Tree editor for Named Areas, Ranks and Distribution Status available (to define user defined term collections and orders, including cross-vocabulary collections) - usage of such collections will be implemented in future releases
    • Taxon/Name details view
      • Nomenclatural code edition editable for rule considered (nomenclatural status and name relationships)
      • Rule considered and nomenclatural code editon visibility configurable (serverside and local)
      • Minor changes in ordering of misapplied name details view
    • Person details view
      • ORCID editable
    • Taxon navigator:
      • Taxon node doubtful flag editable via context menu
      • Rename view to "Taxon Navigator" (regression in one of the last releases)
      • Refresh problem after editing classfication label or adding child taxon to classification
      • Rename open-in for Taxon Node (Wizard) to ... Dialogue
      • Reorder and rename import menu (items)
    • Import/Export:
      • Multiple fixes for file based ABCD import
      • Fix for DwC-A export
    • Factual Data View
      • Visibility of "modifier" and "modifying text" is configurable now
    • Distribution Editor
      • Default source also used when creating an additional source for an existing source
    • User administration
      • Better error handling for user and group names with not allowed characters

# Subject Status
  cdm 4 Collapse all/Expand all
8466 Delete FeatureTree tables Closed Actions
8673 Allow OriginalSource to link to other CDM objects Closed Actions
8628 Add ORCID as person identifier Closed Actions
8625 Add count parameter to StateData Closed Actions
  cdm-dataportal 3 Collapse all/Expand all
8610 tagged_text_extract_nomstatus() fails handling more than one status Closed Actions
8622 Missing specimen Identifier leads to empty brackets in portal Closed Actions
8596 Add a list of descriptions to the taxon page Closed Actions
  cdmadapter 2 Collapse all/Expand all
8533 missing collector and fieldnumber in abcd import Closed Actions
8632 ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration Closed Actions
  cdmlib 3 Collapse all/Expand all
8676 TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship Closed Actions
8651 Unify description aggregation methods (distribution and structured descriptive data) Closed Actions
8253 Authors for genus autonyms Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8570 PolytomousKeyNode.otherNode missing in REST service response Closed Actions
  cdmserver 2 Collapse all/Expand all
8674 configure cdm-server docker image to run with jemalloc Closed Actions
5048 cdm-server causes unusual high native memory consumption for jvm Closed Actions
  taxeditor 24 Collapse all/Expand all
8685 Exception when calling DwC-A Export Closed Actions
8653 NullPointerException (NPE) when focusing Taxon Name Editor Closed Actions
7457 E+M: Allow filtering for only published in search Closed Actions
7143 Finish not enabled when unprotecting titleCache in new Person dialog Closed Actions
8667 Make Person.orcid editable in TaxEditor Closed Actions
8664 SQLGrammarException when opening Specimen selection Closed Actions
8648 Simplify name details view configuration Closed Actions
8642 Add tree editor for rank, NamedArea and PresenceAbsence Closed Actions
8634 NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import Closed Actions
8631 ABCD import fails to put new taxa into the classification, create mediaspecimens, etc Closed Actions
8630 ClassCastException when ABCD import has finished Closed Actions
8613 For distribution editor default reference should be used also when new source is created Closed Actions
8609 Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard Closed Actions
8584 Appended phrase should be shown on top level for misapplied names Closed Actions
8582 Taxon Navigator: Classification label not refreshed & new taxa not visible Closed Actions
8581 Naming inconsitency: Taxon Navigator or Taxonomic Tree? Closed Actions
8572 Rule considered configurable Closed Actions
8568 improve performance for term and vocabulary preference pages Closed Actions
8470 Handle username constraints in user and group editing Closed Actions
8410 Add nomenclatural code edition to ruleConsidered in TaxEditor Closed Actions
8652 disentangle confusion when connecting to development cdm instance fails Closed Actions
8486 Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu Closed Actions
8226 make modifiers for description elements configurable Closed Actions
7019 sort import menu Closed Actions

CDM Platform 5.10 (released Sep 23rd, 2019)

Issues: 30

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Portal
    • Taxon section in name page can be suppressed via settings.
    • Bug fix of a regression related to the display of DOIs and publication reference links.
  • - Import/Export
    • CDM light export:
      • type designation export differs between textual and specimen type designation
    • Biocase search:
      • add possibility to search for Higher Taxon
  • - CDM Library
    • Bugfixes and code maintenance
      • Providing the default user role USER_MANAGER to all databases.
  • - TaxEditor
    • Bugfix for swap taxon and synonym
    • Further improvements to preference handling
    • Search dialogue for distribution areas works with abbreviations
    • Old taxeditor documentation made available.
  • - Web editor (Phycobank registration UI)
    • Name relations and nomencaltural status now offering fields to mention the nomenclatural code edition.
    • Layout and user experience (UX) issues in the UI have been solved (#8014, #8342, #8377).
    • Fixing important bug to prevent data loss and corruption (#8462, #8527)

# Subject Status
  cdm-dataportal 3 Collapse all/Expand all
8594 registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern Closed Actions
8565 external links and dois no longer showing up Closed Actions
8504 Name page: allow hiding the Taxon section via settings Closed Actions
  cdm-vaadin 8 Collapse all/Expand all
8527 TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time Closed Actions
8462 NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext() Closed Actions
8409 add nomenclatural code select to NameRelationField Closed Actions
8408 add nomenclatural code select to NomenclaturalStatusRow Closed Actions
8377 TypeDesignationsEditors: Delete must not be allowe before the workingset is saved Closed Actions
8376 RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered Closed Actions
8342 shift field Field number Closed Actions
8014 Label wording im UI Name Editor Closed Actions
  cdmlib 6 Collapse all/Expand all
8519 ROLE_USER_MANAGER missing in FirstDataInserter Closed Actions
8517 SpecimenOrObservation: data from protected titleCache missig in portal pages Closed Actions
8513 CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator() Closed Actions
8505 ConfigFileUtil: turn all spring bean methods into not statical methods. Closed Actions
8456 FieldUnitDTO: remove newInstanceMethod Closed Actions
8425 FieldUnitDTO: remove taxonRelatedDerivedUnits Closed Actions
  cdmlib-remote 1 Collapse all/Expand all
8538 add text_l10n for TextualTypeDesignation.text to web service respones Closed Actions
  taxeditor 12 Collapse all/Expand all
8123 Make available features a DB preference Closed Actions
8092 set default for term and vocabulary selection preferences in selection wizard Closed Actions
8034 Recently used references shows all references Closed Actions
7321 multi-language textfields should not show empty text when there is text Closed Actions
8489 Further issues for DB preferences Resolved Actions
8564 Link to PlatformDocumentation wiki page Closed Actions
8539 Add IndividualsAssociation when adding specimens to the character matrix Closed Actions
8488 Characters can not be added to feature trees Closed Actions
8386 Disable admin menu when not logged into a DB Closed Actions
8382 Local Supplemental Data Source Preferences should reflect the state of admin preferences Closed Actions
8335 Store character matrix table state as DB preference Closed Actions
8350 Search dialog for named areas should work with abbreviations Closed Actions

CDM Platform 5.9 (released Aug 29th, 2019)

Issues: 52

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • Term structure improved to allow all types of relations between terms and to allow vocabulary independent term collections/graphs (partly implemented in TaxEditor)
    • Add state vocabulary for presence/absence of a biological structure
    • Improve structure for inapplicableIf handling in character trees used for descriptive data matrices/datasets and for indentification keys
    • Improve authority handling in data model (preparation only)
    • Allow certain patterns only as usernames (Latin letters, numbers, '_', '.' are allowed)
    • Doubtful (placement) flag for taxon nodes
    • List of nomenclatural code editions (e.g. Melbourne Code) additional to rule considered in nomenclatural status, name relationship and hybrid relationship
    • Fields added to allow externally managed terms and vocabularies (not yet in TaxEditor)
    • Fields for textual/verbatim type designation information
    • Possibility to add fixed markers/types to a description (e.g. to mark a description as a computed/aggregated description which should not be editable)
  • - Data Portal
    • Adapted to term structure changes in the data model.
    • Improved ordering of type designations in the name and taxon pages.
    • Harmonization and improvement of the specimen display in various parts of the portal, including better intra portal linking.
    • Performance improvement regarding to type designations.
    • Auto-zooming of maps has been fixed for different map projections.
    • Improved layout of the registration page to clearly show the nomenclatural act.
    • Classification tree horizontally automatically scrolls to active entry.
  • - Import/Export
    • CDM light export:
      • add textual/verbatim type designations
      • some minor adaptations
  • - CDM Library
    • Fix and improve polytomous key generation (to be used from descriptive data set, experimental feature)
    • Multiple improvements and bug fixes to web services
  • - TaxEditor
    • Add textual/verbatim type designations to details view
    • Use feature states for applicability of term nodes
    • Improvement and harmonization of serverside and local preferences
    • Update name in source data when changing an accepted taxon into a synonym (configurable)
    • Allow setPublish for subtree to include misapplied names, pro parte synonyms and exclude hybrids
    • Seperate term tree editor for each term type available
    • Warning if misapplied names or pro parte synonyms are used/linked from more then 1 other taxon.
    • Bugs.
      • fixed term order of term trees

# Subject Status
  cdm 12 Collapse all/Expand all
8454 Only allow certain patterns as username and groupname Closed Actions
8442 Add fields to handle external terms to DefinedTermBase or TermBase Closed Actions
8441 Add FeatureState class Closed Actions
8429 Rename DeterminationEvent_Reference.setOfReferences_id Closed Actions
8398 Add nomenclatural code edition to ruleConsidered Closed Actions
8281 Doubtful flag for TaxonNode Closed Actions
8180 Add property term "Presence/Absence" to CDM default terms Closed Actions
7957 Add types for taxon description (as EnumSet) Closed Actions
7470 Verbatim type designation information Closed Actions
7099 Make CdmAuthority a persistable class Closed Actions
4884 Update Reference_AUD.refType to allow NULL Closed Actions
3972 Strictly validate username to not null and not empty Closed Actions
  cdm-dataportal 11 Collapse all/Expand all
8502 taxa with doubtful flag lack proper formatting Closed Actions
8495 classification tree horizontally scrolls to active entrty Closed Actions
8449 improve layout of registration page to clearly show the nomencaltural act Closed Actions
8448 Maps settings > Bounding box inconsistent Closed Actions
8440 specimen accession numbers link to specimen page Closed Actions
8430 maps zoom to wrong bbox with some layers Closed Actions
8418 specimens and occurrence links must not have a target=_blank attribute Closed Actions
8415 use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval Closed Actions
8406 specimens and occurrence code cleaning and harmonization Closed Actions
8402 ordering typedesignations in name and taxon page Closed Actions
8166 Adapt dataportal to term structure changes Closed Actions
  cdmlib 8 Collapse all/Expand all
8437 ITermTreeService provides a list method which supports filtering by TermTree.termType, Resolved Actions
8482 java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151) Closed Actions
8422 Make PolytomousKeyGenerator work (correctly) Closed Actions
7450 Allow setPublish for subtree to include misapplied names and pro parte synonyms Closed Actions
3472 Update name in source data when changing an accepted taxon into a synonym Closed Actions
8426 IndexOutOfBoundsException during serialization of RegistrationWorkingSet Closed Actions
8404 Add update step list within updaters Closed Actions
8446 Allow setPublish for subtree to filter for hybrids Closed Actions
  cdmlib-remote 5 Collapse all/Expand all
8434 Change FeatureTree contollers to TermTree controllers Closed Actions
8414 occurrence controller code cleaning and harmonization Closed Actions
8395 NullPointerException (NPE) in NameCatalogueController Closed Actions
8390 implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup Closed Actions
8436 featureTree/* services should filter the termTrees by the TermType Feature Closed Actions
  taxeditor 16 Collapse all/Expand all
8389 Correct handling of default values with allowOverride=false Resolved Actions
8532 common name language selection is not selected Closed Actions
8526 Swap synonym with accepted taxon does not work Closed Actions
8385 Open issues in DB preferences Closed Actions
8334 Move sources for type designations to details view Closed Actions
8282 Implement placementDoubtful in TaxEditor Closed Actions
8135 Implement verbatim type information in TaxEditor Closed Actions
8600 Taxon Navigator: tree no longer scrolls while draging a taxon node Closed Actions
8485 Add column groups to character matrix Closed Actions
8480 Use DescriptionTypes for matrix descriptions Closed Actions
8475 Adapt applicable state detail view elements to FeatureState Closed Actions
8465 Term nodes order in term trees is ignored in term tree editor Closed Actions
8447 Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids Closed Actions
8444 Show warning if misapplied names / pro parte synonyms are used more then once Closed Actions
8235 Create separate menu for term tree editors for each term tree type Closed Actions
7597 Aggregate and persist descriptions on taxon level Closed Actions

CDM Platform 5.8 (released on Jul 19th, 2019)

Issues: 65

Downloads: Ask the edit team for backups of this version

What's new?

  • - Model
    • cm added as measurment unit
  • - Data Portal
    • Improvements to the media page related to source references and the media title
    • Name page shows more information: name relations, type designation with specimen map, related taxa, nomenclatural acts (registrations)
      • The automatic redirect behavior to the taxon page is now configurable
    • Registration search:
      • Support for filtering by references
      • Improved search by type designation status and name
    • Registration page:
      • Subheadline to show the type of the nomenclatural event
    • General layout improvements
      • Links to reference pages as unobtrusive icon link
    • Maps:
    • User interface to search the Unified Taxonomic Information Service (UTIS)
    • Bugfixes related to
      • Name relations
      • Nomenclatural status
      • Type designations
  • - CDM Server
    • improved error detection when failing to start
  • - TaxEditor
    • improved deduplication for references in name editor (hotfix 5.7.3)
    • handling of preferences improved
      • consistent model to always allow default and specific values and to handle override more intuitive
      • area specific status list preferences for distribution data
      • status list serverside preferences for distribution data handled in details view
      • ranks as serverside preferences
      • nomenclatural status as serverside preferences
      • visibility of fields Source.idInSource and Source.IdNamespace as preferences
    • CDMlight export
      • includes excluded flag and excluded notes
      • sortindex for taxa added
      • improvements in ABCD import
    • Terms allow adding media in term editor
    • Media:
      • media loaded asynchronously to improve performance (has open issues)
    • Bugs
      • exception/freezing when opening name in source search dialogue (hotfix 5.7.3)
      • recognize again the previous state (opened sections) of details view and supplemental data view (hotfix 5.7.3)
      • refresh in name bulk editor after search (hotfix 5.7.3)
  • - Web editor (Phycobank registration UI)
    • Registration list view with reference filter
    • Curators and admins can edit arbitrary Annotations (Notes)
    • Bugfixes related to
      • user permissions
      • ...

# Subject Status
  cdm 1 Collapse all/Expand all
8286 Add cm as unit term to CDM Closed Actions
  cdm-dataportal 25 Collapse all/Expand all
8388 UTIS search block Closed Actions
8370 feature blocks created by compose_description_element_individuals_association() are broken Closed Actions
8368 problems in compose_cdm_specimen_or_observation_tree_entry() Closed Actions
8366 Same typedesignation display for registration page as in name page Closed Actions
8352 name page: show nomenclatorical acts Closed Actions
8351 name page: show type designations with map Closed Actions
8347 point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc. Closed Actions
8321 Namepage shows wrong taxa as related to the name Closed Actions
8320 Links to reference page as appendend icon instead of having the whole citation as link Closed Actions
8318 TaxonName processing for taggedFullTitle Closed Actions
8245 Improve representation of DescriptionElementBase.timeperiod Closed Actions
8016 Registration page: subheadline with event type Closed Actions
7966 Registration search simplify type select options Closed Actions
7620 RegistrationSearch implemented with Reference filter Closed Actions
6380 typedesignations missing in homotypic group Closed Actions
6316 display source references of media objects in media page Closed Actions
5857 show nomenclatural status for for representations of TaxonName Closed Actions
8304 Name page redirects to according taxon depending on query parameter Feedback Actions
8306 Registration page links to registered taxon name Closed Actions
8108 Name page shows complete name information (I) Closed Actions
7975 Implement a block to display name relations Closed Actions
4177 display of name relationships in synonymy broken Closed Actions
8280 polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder Closed Actions
6709 Do not show UUID on media page Closed Actions
5855 potential improvements in settings for name relationship types Closed Actions
  cdm-vaadin 6 Collapse all/Expand all
8346 Curators and admins can edit arbitrary Annotations (Notes) Closed Actions
8345 RegistrationListView: filter option for publication Closed Actions
8278 LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator Closed Actions
8167 Permission denied for Submitter when adding section to newly created journal Closed Actions
8284 starting a registration for an existing name causes the name editor to pop up in read only mode Closed Actions
8279 ClassCastException in CdmUserHelper.user() Closed Actions
  cdmadapter 5 Collapse all/Expand all
8273 abcd import: check for all specimen for DNA in DNABank Feedback Actions
8264 excluded and excluded notes in cdmlight export Closed Actions
6627 Remaining cdm light issues Closed Actions
8322 add sortindex to cdm light export Resolved Actions
8344 Cdm light export: add dummy line in simple facts table Closed Actions
  cdmlib 12 Collapse all/Expand all
7433 new service method to get specimen by genetic AccessionNumber Resolved Actions
8369 SpecimenTypeDesignationDTO can not be serialized to JSON Closed Actions
8365 DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers Closed Actions
8354 taxonomic registration search by name finds also typifications for this name Closed Actions
8330 RegistrationDao search method Closed Actions
8314 TaxonName provides the FullTitleCache as TaggedText Closed Actions
7902 Allow default values for PreferencePredicates Closed Actions
7829 Improve deduplication of parsed names and references Closed Actions
7296 externalize redmine api key Closed Actions
8287 RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed Closed Actions
8257 Remove factory methods for term node creation Closed Actions
8062 Make default preferences deletable serverside Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8319 NomenclaturalStatus webservice implemented Closed Actions
7621 registration search also covers typified names Closed Actions
  cdmserver 1 Collapse all/Expand all
5774 cdmserver misses to detect some errors in failed instances Closed Actions
  taxeditor 13 Collapse all/Expand all
8293 Distribution preferences for details view should be serverside preferences Feedback Actions
8256 Show all status preferences as table Feedback Actions
8088 Open taxon node wizard issues Feedback Actions
8045 Improve handling of default values and override in local preferences Feedback Actions
7920 Possibility to define area specific status selection Feedback Actions
8294 Make display of ID in source and ID Namespace configurable Closed Actions
8129 Load images asynchronously in media details view Closed Actions
8333 Show modifiers for states in Character Matrix Closed Actions
8332 Excel matrix exports only the visible rows Closed Actions
8283 Allow adding media to terms in taxeditor Closed Actions
8260 Details and Supplemental Data View do not save the expansion state of sections Closed Actions
8323 Make nom.status and rank lists a CdmPreference Feedback Actions
8058 Further issues for (local) preferences Feedback Actions

CDM Platform 5.7 (released on May 6th, 2019)

Issues: 21

Downloads: Ask the edit team for backups of this version

What's new?

  • - Data Portal
    • Bugfix for setting the feature tree for the general page
  • - TaxEditor
    • some urgent bugfixes for character matrix editing
    • possibility to define area specific distribution status for distribution editor (UI for setting this preference is still missing)
    • some bugfixes
  • - Web editor (Phycobank registration UI)
    • All comboboxes for references are making use of the ellypsed reference labels
    • The TaxonNamePopeditor now supports editing the nomenclatural status
    • Name type status filter in registration search simplified
    • and some bugfixes

# Subject Status
  cdm-vaadin 8 Collapse all/Expand all
8252 reference ellypsis must not be applied to all reference types Closed Actions
8250 ReferenceEditor: inReference must not be required for type book Closed Actions
8246 TaxonNamePopupEditor can not be canceled Closed Actions
8220 incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference Closed Actions
8215 User demand: sorting order in reference editor Closed Actions
8209 use ellypsed references for all reference comboboxes Closed Actions
8193 TaxonNamePopupEditor: add select form element for Nomenclatural status Closed Actions
7965 Registration search simplify type select options Closed Actions
  cdmlib 2 Collapse all/Expand all
8189 Allow configuration of 'user.home' via the spring environment Closed Actions
7953 Book in BookSeries: incomplete titleCache misses series title Feedback Actions
  cdmlib-remote 1 Collapse all/Expand all
8251 LazyInitializationException (LIE) in featureTree webservice Closed Actions
  taxeditor 10 Collapse all/Expand all
8349 NPE in ParseHandler when parsing name without nomencl reference Closed Actions
8316 Endless loop when editing name in source of distribution Closed Actions
8315 Parsing existing references with inReferences changes the inReference Closed Actions
8267 common name preference saving does not work correctly Closed Actions
8266 local preference is not evaluated for distribution editor status Closed Actions
8265 Referencing objects view does not work for term editor Closed Actions
8263 Improve performance of term editor Resolved Actions
8258 Default Feature Tree contains name features and features Closed Actions
8241 Rename FeatureTreeEditor to TermTreeEditor Closed Actions
8229 reload of the bulkeditor does not work correctly Closed Actions

CDM Platform 5.6 (released on Apr 12th, 2019)

Issues: 67

Downloads: Ask the edit team for backups of this version

What's new?

  • Data Model
    • feature trees have been refactored to typified Term trees which support any type of terms
    • added term types to term vocabularies
    • added structure, property and regional modifier as new term types
  • - Data Portal
    • added time period for description elements in data portals
    • improve user profile settigs in cdm_dataportal
    • harmonize registrationId links and make testing easier
    • improve image gallery settings labeling
  • - Import/Export
    • name facts added to cdm light export
  • - TaxEditor
    • term editor
      • add "plural" to representations
      • new term editor for structures, properties, regional modifers
    • feature/term tree editor
      • feature trees became more generic and support all types of terms (not yet fully available in editor)
      • restrict editor according to typified term trees
    • name editor
      • creating duplicates of specimen type designations
    • update of open data after updating subtree operations (update publish flag and update sec reference)
    • user selection dialogs for group members filter out already added users
    • name facts now editable, when selecting name in details view and in name bulk editor
    • sources can be added to type designations
    • Bugs
      • changing of title cache of a factual data set was not possible
      • selection dialogs for teams or persons did not filter out institutes
      • insufficient rights lead to missing focus in name editor
      • fixed title cache issues for taxon descriptions
  • - Web editor (Phycobank registration UI)
    • User friendly message when accessing editors with unsufficient permissions (#8218)
    • Registry curator can unlock a published registration for minor changes (#8192)
    • Solving a major performance problem related to uninomial und specific epithet comboboxes (#8176)
    • Better lables for popup editors breadcrumbs (#7962)
    • ReferenceEditor: optional validation for completenes of Partial values in datePublished (#7968)
    • Create blocking relations for un-registered names which are to be used in nomenclatural acts (#8050)
    • TaxonNamePopEditor: name part field visibility not correct for all ranks (#7963)
    • ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL (#8149)
    • ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked (#8191)
    • Bugfixes:
      • Fixing enabled state of edit buttons in combobox widgets (#8217)
      • Solving multiple problems related to problems with hibernate session an transaction handling
      • Problem with inserting a section - inReference is "lost" (#8097)
      • Error saving name type designation editor due to problem in poupeditor context (#8099)

# Subject Status
  cdm 2 Collapse all/Expand all
8190 Default FeatureTree throws exception Closed Actions
8162 Move term related classes from model.common to model.term Closed Actions
  cdm-dataportal 5 Collapse all/Expand all
8106 improve image gallery settings labeling Closed Actions
8093 harmonize registrationId links and make tesing easier Closed Actions
5699 user profile settigs in cdm_dataportal module done wrong Closed Actions
3747 Check if time period is handled correctly for description elements in data portals Closed Actions
3616 Show DescriptionElementBase.timeperiod in Dataportals Closed Actions
  cdm-vaadin 23 Collapse all/Expand all
8218 Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions Closed Actions
8217 ToManyRelatedEntitiesComboboxSelect edit button not enabled Closed Actions
8214 WeaklyRelatedEntityCombobox is not validated Closed Actions
8213 MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart Closed Actions
8194 LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name Closed Actions
8192 The curator must be able to unlock a published registration for edition Closed Actions
8191 ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked Closed Actions
8188 Allow configuring hibernate properties via properties file Closed Actions
8184 SpecimenTypedesignationEditor: add new specimen broken Chrome browser Closed Actions
8176 WeaklyRelatedEntityCombobox is slow Closed Actions
8160 CdmBeanItemContainerFactory as readonly service bean Closed Actions
8158 cascade="all-delete-orphan" problem when .... Closed Actions
8149 ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL Closed Actions
8107 NPE when throwing PopupEditorException in AbstractPopupEditor Closed Actions
8099 Error saving name type designation editor due to problem in poupeditor context Closed Actions
8097 Problem with inserting a section - inReference is "lost" Closed Actions
8075 multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations Closed Actions
8065 HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table Closed Actions
8050 Create blocking registrations for un-registered names which are to be used in nomenclatural acts Closed Actions
7968 ReferenceEditor: optional validation for completenes of Partial values in datePublished Closed Actions
7963 TaxonNamePopEditor: name part field visibility not correct for all ranks Closed Actions
7962 PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels Closed Actions
7881 reference selection combobox broken after error in ... Closed Actions
  cdmadapter 1 Collapse all/Expand all
8175 add name facts to cdm light export Closed Actions
  cdmlib 6 Collapse all/Expand all
8171 javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed Closed Actions
8153 Adapt cdmlib to FeatureNode/FeatureTree model changes Closed Actions
8104 TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart Closed Actions
7896 NPE, NullPointerException in RelationshipTermBase Closed Actions
7106 avoid factory.openSession() in CdmRepository Closed Actions
615 remove suns repository Closed Actions
  cdmlib-remote 2 Collapse all/Expand all
8173 spring profile remoting enabled by default Closed Actions
8096 Implement CacheUpdater as long running task with correct progress monitoring Closed Actions
  taxeditor 28 Collapse all/Expand all
8234 Move description elements issues Closed Actions
8228 refresh of details for same object in different bulk editors does not work Closed Actions
8225 Deleting one of two type designations removes both Closed Actions
8223 Urgent TaxonNode wizard issues Resolved Actions
8222 Deleting a type designation from a name is directly persisted Closed Actions
8211 Trigger new search when clicking on identifier search Closed Actions
8200 Changing title(cache) for factual data set not possible Closed Actions
8197 Deleting Media from Image Gallery View does not make view dirty Closed Actions
8151 after creating a new synonym and pasting a name string the default string is not removed Closed Actions
8150 Allow editing the representation label of characters in details view Closed Actions
8148 Login Dialog cuts off information Closed Actions
8147 Add "plural" to representation detail element Closed Actions
8146 Adapt taxeditor UI to structure and property term type Closed Actions
8143 It is possible to open multiple instances of the login dialog Closed Actions
8136 Implement sources for type designations in TaxEditor Closed Actions
8124 Activate Name Facts in Taxeditor Closed Actions
8121 Allow selecting structural/property modifiers when creating a character Closed Actions
8115 NPE when moving factual data Closed Actions
8111 User selection dialog for groups does not filter out existing users Closed Actions
8011 Implement term search view Closed Actions
7923 Add context menu and drag'n'drop to CharacterEditor Closed Actions
7865 Remaining factual data view label issues Resolved Actions
7541 Insufficient rights lead to missing focus in name editor Closed Actions
7515 TypeDesignationStatusComparator to sort by vocabulary first and then by term order Resolved Actions
7428 Open issues for updating open data while subtree is updated Closed Actions
6413 [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name Closed Actions
4545 Implement TeamOrPersonBaseSelectionDialog Closed Actions
3836 Implement modifiers and modifying text for Description Elements in TaxEditor Closed Actions

CDM Platform 5.5 (released on Feb 14th, 2019)

Issues: 123

Downloads: TaxEditor, CDM Server, Data Portal

What's new?

  • - Data Model
    • removed/added some attributes from certain attribute types (e.g. removed date published and authorship from journals and print series, added ISBN to Proceedings)
  • - CDM Server
    • Available as docker container
  • - Import/Export
    • taxon (tree)index added to CDMlight export
  • - Dataportal
    • improved registration page, now showing the complete nomenclatural act data and registration metadata
      • human feedback to users in case a registration is not public or does not exist
    • improved diplay of type designations
    • improved display of registrations in lists like in search results and reference page
    • reference page shows name relations
    • details page for field units improved
    • some bugs fixed
  • - TaxEditor
    • Distribution editor
      • use new table frame work (so called NAT tables), offering improved usabilty and functionality like filtering, column freezing etc
      • improved area selection dialog
      • bug fixes
    • Preferences
      • new menu structure for local preferences (not fully completed yet)
      • serverside preferences and local preferenced unsing same user interface pages
      • translation to German completed
      • improved handling of "(allow) override" functionality
      • improved handling of default values
      • (the last 2 will be further developed into 1 system with one of the next releases)
    • References
      • DOI available as attribute
      • warning for multiple usage of references also in details view (not only in editing dialog)
      • improved attribute selection for specific reference types (see data model section above)
    • Rights&Roles
      • Role "remoting" added, only users belonging to a group with role remoting are allowed to open data in TaxEditor
    • Term editor
      • performance improved
      • 2nd symbol for terms available
      • Bugs/exceptions when moving or adding terms fixed
    • Feature tree editor
      • drag&drop from (feature) term editor available
      • Right click menu added (replacement for buttons)
      • copy&paste added (for the rare case that a feature should be reused within the tree)
    • Name editor
      • invalid designations available similar to pro parte synonyms and misapplied names (formatting not yet correct)
    • Description/Character Editor (experimental, multiple improvements)
    • Taxon node wizard improved
    • Automated deduplication of references and authors works also for new taxon dialog (before it worked only in name editor)
    • Bugs
      • Improved (title)cache updating
      • Empty dialog for File -> New -> Reference -> Change reference type fixed
      • Some exceptions thrown in term editor fixed
      • sometimes invisible deduplication icons fixed in bulk editor
      • handling of deleting new+unsaved records fixed in bulk editor
  • - Web editor (Phycobank registration UI)
    • Reference editor
      • Reference editor: Label In proceedings in InProceedings missing
      • ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
      • ReferencePopupEditor: apply sensible reference type pre-set for in references
      • ReferenceEditor: filter inReferences by applicable reference type
      • ReferenceEditor misses institution, organization and school fields
    • TaxonNameEditor:
      • Entering data for name parts (genus, specific epithet) is now required
      • Exclude current name from name relationship comboboxes
      • orthographic name correction available
    • Registration start view:
      • Reference combobox to offer two search modes
      • Exclude irrelevant reference types from list of existing publications
    • Registration Workingset Editor
      • A couple of severe bugs fixed
      • realiably setting registration date when status is set to PUBLISHED
    • Registration search
      • Registration items in list view is using the wrong button icons for blocking regs and validation errors
    • SpecimenTypeDesignationEditor
      • Display of altitude fixed and also a related problem when saving
      • GeoLocationField uses OpenTopoMap
      • Collection date supports timespans
      • Improved user feedback
      • Geolocation
        • Suopport for reference systems
        • Map shows error radius
    • cdmlib-vaadin UI widgets
      • Reference combobox options with ellypsed reference titles
      • ToOneRelatedEntityCombobox validation fixed, layout problems solved
      • PopupEditors notify user on editor changes and allow the user choose from discard or save in a dialog
      • PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
    • Label improvements
    • Permission and security improvements
    • Performance improvements
    • Classification fragments are managed in a non cyclic directed graph, this mainly improves the search capabilities
      • Automatic management of the graph during editing of RegistrationStatusFieldInstantiator
    • Bugs fixed:
      • Massive memory consumption problem solved
      • Multiple representations problems fixed
      • LazyInitializationExceptions fixed
      • Fixing problems with possibly corrupted hiberante sessions
    • Complete removal of the rejected messaging prototype implementation

# Subject Status
  cdm 6 Collapse all/Expand all
8030 Cache updater service methods externalized and base class specific Closed Actions
7930 Remove DOI from journals, print series and person communications Closed Actions
7918 Revision of reference type specific properties Closed Actions
7915 Remove date published from journals and print series Closed Actions
7914 Add ISBN to IProceedings Closed Actions
7913 Remove authorship from IJournal and IPrintSeries Closed Actions
  cdm-dataportal 13 Collapse all/Expand all
8076 implement test for typified name for registration page Closed Actions
8074 Registration page has fatal error when registration identifier in url path is ivalid Closed Actions
8073 Registration page: show typified name for registrations covering typifications only Closed Actions
8056 WSOD in cdm_dataportal/search/results/taxon Closed Actions
8051 improve display of registration items lists Closed Actions
8048 Selenium test for Registration page Closed Actions
7977 Registration page layout improved Closed Actions
7974 Layout for Registration date Closed Actions
7947 registration page shows name relations Closed Actions
7927 Registration not found, Portal handling registrations in preparation Closed Actions
7907 Annotations in Reference page do not respect the annotation settings Closed Actions
7616 reference page: show name types Closed Actions
7564 remove Phycobank - Registration data - block and other outdated registration code Closed Actions
  cdm-vaadin 46 Collapse all/Expand all
8090 Reference editor: Label In proceedings in InProceedings missing Closed Actions
8072 Registration items in list view is using the wrong button icons for blocking regs and validation errors Closed Actions
8071 ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity Closed Actions
8070 ReferencePopupEditor: apply sensible reference type pre-set for in references Closed Actions
8069 RegistrationUI: remove all messaging related code and message indicators from all views Closed Actions
8064 NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() on saving new name for new registration with new genus Closed Actions
8063 multiple representations problem wirth collector being author of the registration citation Closed Actions
8059 NPE when adding existing but un-registered name to workingset Closed Actions
8039 NPE when creating new name in unsaved NameTypeDesignation for exising name in workingset which has no registration yet Closed Actions
8031 Cannot add existing name to blank workingset Closed Actions
8013 LazyInitializationException (LIE) in RegistrationDTO.makeBibliographicCitationStrings Closed Actions
7995 Registration.registrationDate not set when status is set PUBLISHED Closed Actions
7956 RegistrationWorkingsetEditor refresh problem after saving TaxonNameEditor Closed Actions
7951 Reference Combobox option titles can be too long causing the select box to extend too much Closed Actions
7950 ToOneRelatedEntityCombobox: add new button "jumpes" to the right when hovering the mouse over Closed Actions
7949 New Registration: Reference combobox to offer two search modes Closed Actions
7946 RegistrationStatusFieldInstantiator must set status value internally before adding the ValueChangedListener Closed Actions
7944 TaxonNamePopEditor: name part fields are required Closed Actions
7942 SpecimenTypeDesignationEditor: Explanation on why editor can not be saved without type designation Closed Actions
7937 TaxoNamePopupEditor: Exclude current name from name relationship comboboxes Closed Actions
7925 AbstractPopupEditor: exception handling in save method is incomplete Closed Actions
7919 GeoLocationField uses OpenTopoMap Closed Actions
7916 SpecimenTypeDesignationEditor: Map shows error radius Closed Actions
7910 TeamOrPersonField: readonly exception on bindig data Closed Actions
7908 Redmine communication hub slows down RegistrationWorkingSets Closed Actions
7906 AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save Closed Actions
7905 NPE in InstitutionEditorPresenter Closed Actions
7900 Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets Closed Actions
7899 enable orthographic name correction in Vaadin Closed Actions
7893 RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled Closed Actions
7892 RegistrationWorkingsetEditor: LIE creating new name for book section Closed Actions
7888 TypeSpecimenEditor: Collection date should be timespan Closed Actions
7878 Edit CollectionCode not saved Closed Actions
7870 RegistrationWorkingsetEditor: Internal error on clicking "new name" Closed Actions
7867 FieldGroup$BindException: The given field is not part of this FieldBinder in TeamOrPersonField Closed Actions
7866 Phycobank UI further label improvements Closed Actions
7846 PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar. Closed Actions
7833 submitters can access see any registration in any RegistrationWorkingSet Rejected Actions
7718 New Registration: Exclude irrelevant reference types from list of existing publications Closed Actions
7639 SpecimenTypeDesignationEditor: Altitude not saved and displayed properly Closed Actions
7559 possibly corrupted hiberante session after previous error on saving editor Closed Actions
7481 ReferenceEditor: filter inReferences by applicable reference type Closed Actions
7480 ReferenceEditor misses institution, organization and school fields Closed Actions
7245 validation of ToOneRelatedEntityCombobox not working Closed Actions
7218 SpecimenTypedesignationsWorkingsetEditor: support for Reference system Closed Actions
6869 Reference editor: Advanced mode only available for curators Closed Actions
  cdmadapter 1 Collapse all/Expand all
7903 Add treeIndex with rank to cdm light export Resolved Actions
  cdmlib 6 Collapse all/Expand all
8066 CdmUserHelper.createAuthorityFor() causes flush of pending transactions Closed Actions
7939 TaxonNodeDTO need sortIndex of Rank Closed Actions
7901 Make PreferencePredicates an interface to allow multiple implementations (e.g. for client apps, for grouping, for data type specific instances, etc.) Closed Actions
7874 TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters Closed Actions
7600 public setters for entity collections Closed Actions
7217 SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats Closed Actions
  cdmlib-remote 4 Collapse all/Expand all
8042 UI is too restricted for users with right Project Manager Closed Actions
7978 registration search result ordered by identifier descending Closed Actions
7972 explicitly allow disallow access to HTTP Invoker endpoints (/remoting/**) Resolved Actions
7924 LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter Closed Actions
  cdmserver 1 Collapse all/Expand all
6522 package cdm-server in docker container Closed Actions
  data 1 Collapse all/Expand all
7811 Import higher classifications Feedback Actions
  taxeditor 45 Collapse all/Expand all
8041 PatternSyntaxException in FeatureTreeSelectionDialog Closed Actions
8037 "Detail" is not saved in taxon node wizard Closed Actions
8032 NPE when editing Local Prefs -> Factual Data Closed Actions
8026 details view is empty for some references in bulk editor Closed Actions
7999 Allow override does not work correctly for distribution areas Closed Actions
7998 Store newly created Characters in selected vocabulary Closed Actions
7993 Display "Access Denied" dialog in case the remoting service responds with status code = 4xx Closed Actions
7985 Remove Print Series from InProceedings, use "Proceedings" Closed Actions
7954 protected vs. unproteced caches in TaxEditor Closed Actions
7941 Deduplication does not work in new taxon dialog Closed Actions
7940 "New" menu in navigator not available for certain users Feedback Actions
7934 sometimes the signs for deduplication are not shown Closed Actions
7933 Adding a new Term to the "Country" vocabulary leads to corrupt data Closed Actions
7931 add symbol2 to term detailsview Closed Actions
7929 after delete of not persisted object in bulkeditor the object is still in bulkeditor list Closed Actions
7912 Enhance checkbox tree viewer Closed Actions
7887 Use DTOs in term editor Closed Actions
7880 Implement centralized preference default loading strategy Closed Actions
7877 Form elements disappear in reference dialog after changing the reference type Closed Actions
7875 Add multiple area selection to descriptive data set editor Closed Actions
7873 Implement copy&paste for feature nodes in feature tree editor Closed Actions
7871 Open character matrix as singleton Closed Actions
7869 Run gfbio term service requests as background tasks Closed Actions
7868 Allow creating a new vocabulary in vocabulary selection dialog Closed Actions
7856 Allow local override for distribution vocabularies Closed Actions
7854 Open issues in TaxDistributionEditor Closed Actions
7850 Further problems with term editor Duplicate Actions
7849 Improve DB Preferences handling and saving in TaxEditor Closed Actions
7847 Use separate column for row state instead of symbol in titleCache column Closed Actions
7836 ClassCastException when invoking cdm light export with wrong selection Closed Actions
7806 GfBio Term Search issues Closed Actions
7794 Update TaxonNodeWizard Closed Actions
7761 Invalid designations should be displayed like misapplied names in name editor Closed Actions
7746 NPE when deleting volatile DescriptionBase Closed Actions
7737 Reference Details view does NOT give a multiple usage warning Closed Actions
7680 Refactor TaxonNodeDetailElement Closed Actions
7668 NPE when changing author Closed Actions
7649 Term editor loads/saves extremely slow Closed Actions
7367 Deleting a term in the term editor does not update the UI Closed Actions
7163 Restructure preferences Closed Actions
6951 Drag and drop does not update term hierarchy in the UI Closed Actions
6806 Add context menu to FeatureTreeEditor Closed Actions
6805 Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor Closed Actions
5926 Update labels in TermEditor for Vocabularies Closed Actions
4227 handle generated resources in eclipse workspace Feedback Actions

Previous Releases Archive

see CdmPlatformRoadmapArchive

Updated by Andreas Müller almost 3 years ago · 652 revisions