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Release Notes » History » Version 608

Andreas Müller, 12/04/2020 03:55 PM

1 149 Andreas Kohlbecker
# Cdm Platform Roadmap
2 148 Andreas Kohlbecker
3
4 203 Andreas Müller
_Please login to see all tickets_
5 10 Andreas Kohlbecker
6 270 Andreas Müller
{{>toc}}
7 314 Andreas Müller
8 599 Andreas Müller
## CDM Platform 5.19 (scheduled for Dec 15th, 2020)
9 1 Andreas Kohlbecker
10 601 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 298 , -c)}}*
11 1 Andreas Kohlbecker
12 599 Andreas Müller
*Downloads:*(not yet available) [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.19.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.19.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.19.0/)
13 1 Andreas Kohlbecker
14 599 Andreas Müller
**What will be new?**
15
16 606 Andreas Müller
## CDM Platform 5.18 (released Dec 3rd, 2020)
17 599 Andreas Müller
18
*Issues: {{ref_issues(-f:fixed_version_id = 295 , -c)}}*
19
20 606 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.18.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.18.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.18.0/)
21 599 Andreas Müller
22
**What is new?**
23
24 604 Andreas Müller
* **Data Model**
25 605 Andreas Müller
 * "single sources"
26
     * some data that refer to a single source only are now handled as full sources (before it was only a reference and a reference detail), with possibility to add further information like name used in source and external links; 
27
     * protologues/original publications handled as external link for the nomenclatural source
28
     * original spelling handlied as name used in source of nomenclatural source now (before it was a name relationship)
29
 * added new nomenclatural status "comb. ined", xxx
30
 * labels updated for "is blocking name for" and "is isonym of" ("is" was missing) 
31
 * abbreviations added for "Flowering Period" (Fl.) and "Fruiting Period" (Fr.)
32
 * add [m] as predefined default measurement unit for altitude
33
 * improved handling of nomenclatural standing of a taxon name
34 604 Andreas Müller
35 607 Andreas Müller
* **CDM Library**
36
 
37
 * improve formatting with citation detail
38
39 599 Andreas Müller
* **Data Portal**
40 1 Andreas Kohlbecker
41 606 Andreas Müller
 * specimen lists and pages fully refactored and improved (work in progress)
42 1 Andreas Kohlbecker
 * map serives improved
43 606 Andreas Müller
 * adapt sort order of taxon tree to sort order in TaxEditor
44
 * display of name facts improved
45
 * new base font size
46
 * improved rendering of footnotes
47
 * fix missing nomenclatural status on name pages and registration pages
48 1 Andreas Kohlbecker
49 606 Andreas Müller
* **Exports**
50
51
 * Several major and minor issues fixed in cdmlight export (#9262, #9256)
52 607 Andreas Müller
 * less cryptic default name for cdmlight export file
53 1 Andreas Kohlbecker
54
* **TaxEditor**
55
 
56 607 Andreas Müller
 * "Single Sources"
57 608 Andreas Müller
58
     * objects with single Sources (like taxon name nomenclatural source or name relationship source, etc.) are handled as full sources now including "Name in source", "original Information", "external links" etc.
59
     * protologues/original publications were moved to the new nomenclatural source section as external link for the nomenclatural source
60
     * original spelling now available in nomenclatural source section
61 607 Andreas Müller
 * term tree (hierarchy) editors and character editors fully refactored and many bugs fixed, also preferences for term tree display added
62 1 Andreas Kohlbecker
 * reduce download size and preparation for further reducing download size
63 607 Andreas Müller
 * remove incorrect "invalid designation" handling
64
 * assist for secundum handling when making a synonym an accepted taxon
65
 * add LSIDs to persons and references
66
 * improve default reference type for in-reference creation dialogue (depending of the original reference type), e.g. journal for articles
67 1 Andreas Kohlbecker
 * bug fixes:
68 599 Andreas Müller
      * missing dropdown list if no rank was selected yet in name details view
69 607 Andreas Müller
      * adding derived units to derived units (e.g. DNA sample to specimen) is possile again in specimen tree editor
70
      * error in LSID handling
71 1 Andreas Kohlbecker
72 599 Andreas Müller
73
* **Vaadin / Registration**
74 606 Andreas Müller
 * annotations for names and field units visible
75
 * #8859
76 599 Andreas Müller
 
77 590 Andreas Müller
78 598 Andreas Müller
## CDM Platform 5.17 (released Aug 19th, 2020)
79 590 Andreas Müller
80 592 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 299 , -c)}}*
81 1 Andreas Kohlbecker
82 598 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.17.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.17.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.17.0/)
83 1 Andreas Kohlbecker
84 593 Andreas Müller
**What is new?**
85
86 594 Andreas Müller
* **Data Portal**
87 595 Andreas Müller
 * image viewer
88
       * improved thumbnail handling
89
       * automated creation of thumbnail URLs (avoids that always 2 or 3 versions of the image have to be stored in the database)
90
       * improved image meta data handling
91 594 Andreas Müller
 * possible default copyright statement below image viewer
92
 * improve handling of annotations and other footnotes like sources
93
      * some more annotations and sources are shown now
94 1 Andreas Kohlbecker
 * improved map representation for TDWG area maps
95 595 Andreas Müller
 * occurrence maps hidden if no data exists 
96 594 Andreas Müller
 * fix bug that misapplied name taxa are not shown and not found in search
97
 * fix bug that placemark icons are not clickable in map
98
 * improve test system
99
100 1 Andreas Kohlbecker
* **CDM Library**
101 595 Andreas Müller
 * fix https handling for images 
102 594 Andreas Müller
103
* **Web Services**
104
 * fix bug in taxon service that misapplied name taxa return no result
105
106 1 Andreas Kohlbecker
* **TaxEditor**
107 595 Andreas Müller
 * reduce download size (by >100MB)
108
 * make specimen media editable in specimen assistants and in specimen list editor details view (to improve workflow when editing e.g. type specimen)
109
 * find doubtful taxa without having "?" at beginning of search string
110
 * new layout for taxon node dialogue
111
 * additional parameters editable for taxon node placement source
112
 * move update site to https
113
 * open in browser button for ORCIDS
114
 * bugfixes
115
     * when moving synonym into homotypical group of accepted taxon
116
     * missing synchronization between taxon node dialogue and name editor
117
     * problems with name fact preferences
118 1 Andreas Kohlbecker
     * exception when editing data in bulk editor
119
120
* **Vaadin / Registration**
121 597 Andreas Kohlbecker
    * Collection editor extended by name filed
122
    * Improved authorship inferrence redarding ex-authorship
123
    * NameTypePopupEditor: Genus can be selectable as the name type for higher ranks
124
    * Registration items show type status in bold letters
125 595 Andreas Müller
126 596 Andreas Kohlbecker
{{ref_issues(-q:Release5.17 , id, subject, status)}}
127 593 Andreas Müller
128 1 Andreas Kohlbecker
## CDM Platform 5.16 (released June 30th, 2020)
129 583 Andreas Müller
130 585 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 297 , -c)}}*
131 583 Andreas Müller
132 593 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.16.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.16.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.16.0/)
133 583 Andreas Müller
134
**What is new?**
135
136
* **Data Portal**
137
 * Fix for sortorder of taxon nodes in taxon tree
138
 * Fix for incorrect link for geo-coordinates in point maps
139 587 Andreas Kohlbecker
 * Fix for missing information on taxon pages (see #9095)
140 583 Andreas Müller
141
* **CDM Library**
142 589 Andreas Müller
 * Improved deduplication of references and authors during name parsing (the relatively empty parsed references and authors are now merged with richer references and authors, which include e.g. also URI, ISBN, lifespan, first name, etc. information)
143 583 Andreas Müller
 * Improved caching mechanism (which hopefully leads to less multiple representation exceptions in TaxEditor)
144
 * Improved formatting and parsing of dates and periods (now we generally use a format like "30 Jun 2020" which is more language independent)
145
146
* **TaxEditor**
147 584 Andreas Müller
  * Setting focus automatically to newly created facts in Fact View
148
  * Improved reference and author deduplication during creation of new taxa and synonyms
149 588 Andreas Müller
  * Improved handling of malformed URIs
150
  * Fix bug which threw multiple representation exceptions when editing taxa with a taxon node source (which exists very often in some databases)
151 1 Andreas Kohlbecker
  * Fix bug throwing an exception when deleting a classification
152
  * Fix bug throwing an exception when deleting multiple records in bulk editor  
153 596 Andreas Kohlbecker
154
155
{{ref_issues(-q:Release5.16 , id, subject, status)}}
156 583 Andreas Müller
157 558 Andreas Müller
158 568 Andreas Müller
## CDM Platform 5.15 (released June 23rd, 2020)
159 558 Andreas Müller
160 574 Andreas Müller
*Issues: {{ref_issues(-q:Release5.15 , -c)}}*
161 548 Andreas Kohlbecker
162 582 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.15.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.15.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.15.0/)
163 1 Andreas Kohlbecker
164 563 Andreas Müller
**What will be new?**
165
166 565 Andreas Müller
* **Data Model**
167 567 Andreas Müller
 * TaxonNode has a "status" attribute now instead of flags "doubtful", "unplaced" and "excluded"
168
     * Allows to use only max. 1 of the above status for the same node
169
     * "Excluded Notes" changed to => "Status notes" and is valid for what ever status has been chosen
170 566 Andreas Müller
 * Measurement values handled as "BigDecimal" to avoid rounding errors related to floating point algebra and to allow to handle exactness (e.g. 1.6 differs from 1.60) 
171
 * "Available for" attribute for features to distinguish if features are available for taxa, for names and/or for specimen
172
 * Temporal fact datatype for e.g. flowering periods supporting time periods like (Apr-)May-July(-Aug)
173 572 Andreas Müller
 * New feature "Flowering period"
174
 * New feature "Altitude" added
175
 * Rename "later homonym for" to "later homonym of"#
176
 * "Links" added to main classes like taxa, names, references, authors, ... - these allow adding an unlimited number of URL-links to these objects together with a description what this link is for
177
 * Key-Value structure for storing media metadata (not yet used)
178 1 Andreas Kohlbecker
179 572 Andreas Müller
* **Data Portal**
180 579 Andreas Kohlbecker
 * New implementation of the occurrence point display is maps which allows new important features:
181
     * Field unit information can now be shown. 
182
     * Display of error radius
183 580 Andreas Kohlbecker
     * NOTE: More exciting features will come with the following releases.
184 579 Andreas Kohlbecker
 * The new image viewer which has been integrated into the dataportal with version 5.13 is now stable and available for all data portal installations. The new image viewer uses the iiif conform Universalviewer. The new viewer adapts to different screen sizes and supports mobile devices.
185 581 Andreas Müller
 * The beautiful Noto font family is now the default for the data portal and brings improved readability and excellent unicode support.
186
 * The status (unplaced, doubtful, excluded) of a taxon node is now shown on taxon pages and in the classification tree. 
187 572 Andreas Müller
188 571 Andreas Müller
* **CDM Server**
189 568 Andreas Müller
 * Improved logging
190 576 Andreas Kohlbecker
 * Debian installation package improved
191 571 Andreas Müller
192 568 Andreas Müller
* **CDM Library**
193
 * Improved permissions for users being allowed to edit all taxonomies
194 1 Andreas Kohlbecker
195 568 Andreas Müller
* **TaxEditor**
196 570 Andreas Müller
 * Improved deduplication, especially for taxa entered via taxon node editor
197 1 Andreas Kohlbecker
 * Persons: allow editing lifespan
198 568 Andreas Müller
 * Possibility to create or update database schema via connect dialog
199
 * Improved layout of connect dialog
200 572 Andreas Müller
 * Taxon nodes status with status notes (see Data Model), available in taxon node wizard and in CDM light export
201 570 Andreas Müller
 * Factual Data:
202
     * Possibility to enter temporal data (phenology)
203
     * Factual dataset source is shown as (uneditable) source for each fact
204
     * Facts view: remember expansion state after deleting
205
     * Remove caching form facts view which (resulted in unexpected results)
206
 * Descriptive dataset editor and matrix editor:
207
     * Improve performance of matrix editor
208
     * Add context menu to matrix editor (and remove preliminary buttons)
209
     * Fix failing adding of specimen which are not attached to a field unit
210
     * Remove taxon in descriptive dataset editor only available if taxon has focus
211
     * Fix bug when selecting a character tree for a descriptive dataset
212
 * Reference bulk editor table has new included columns: year, in-reference, uri
213
 * Open link button for entering DOIs in reference details view
214
 * Features:
215
     * Possibility to define if a feature is available for taxa, specimen and/or taxon names
216
 * Improved decimal/rounding handling of quantitative data (e.g. distinguish 9.1 form 9.10)
217
 * Configurable if the old specimen list editor should be avialable via main menu
218 569 Andreas Müller
 * Bug fixes:
219 570 Andreas Müller
     * Broken media deatils view fixed for "MediaSpecimen" 
220 568 Andreas Müller
     * Exception when creating a new taxon 
221 569 Andreas Müller
     * Search does find orphaned synonyms now
222 570 Andreas Müller
     * Term search fixed
223 1 Andreas Kohlbecker
     * Exception in referencing objects view for TextualTypeDesignations
224
     * Exception in name details view if name relations were incomplete (no type, no from-name or no to-name)
225
     * Exception when deleting a descriptive dataset
226 570 Andreas Müller
     * Incorrect context menu for synonyms after moving a synonym into or out of the homotypic group
227
     * Opened selection dialogs lock editing in other windows
228
     * Remember expansions state of sections in details view and supplemental data view (this feature was lost for some time)
229
     * Recently used references list is not emptied anymore after using search dialog for nomenclatural reference
230
     * Bulk editor: multiple deduplications without saving do now remember all deduplications
231
     * Some widget is disposed exceptions fixed
232
     * fix verbatime date not persisted for books
233 565 Andreas Müller
234 573 Andreas Müller
{{ref_issues(-q:Release5.15 , id, subject, status)}}
235 563 Andreas Müller
236 558 Andreas Müller
## CDM Platform 5.14 (released April 8th, 2020)
237 1 Andreas Kohlbecker
238
*Issues: {{ref_issues(-f:fixed_version_id = 293 , -c)}}*
239
240 563 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.14.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.14.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.14.0/)
241
242 558 Andreas Müller
**What's new?**
243
244
* **Data Portal**
245 559 Andreas Müller
    * Structured descriptive data is shown on specimen page as continous text
246
    * Bugfix for the new universal media viewer
247
    * Bugfix for some descriptive data pages for taxon descriptions
248 558 Andreas Müller
249 559 Andreas Müller
* **Import/Export**
250
    * Handling of descriptions improved for ABCD import
251
    * Bug fix for CDM lite export of textual type designation missing a language
252
253 558 Andreas Müller
* **TaxEditor**
254 559 Andreas Müller
    * Set as basionym available also for accepted taxa
255
    * Distribution details view: configurable to show also abbreviation for selected named areas
256
    * Performance improved for preference dependend descriptive data matrix editing
257
    * Cloned descriptions show according icon
258
    * User/roles/rights:
259
            * ROLE_USER_MANAGER is allowed to change passwords
260
            * unnecessary "expired" flags removed from User UI
261 560 Andreas Müller
            * isAdmin valid for all users having ROLE_ADMIN
262 559 Andreas Müller
    * DNA Sample view allows editing of determinations
263
    * Export dialogue remembers last selected folder
264
    * Bug fixes:
265 560 Andreas Müller
         * Handling of preferences for term lists fixed
266 559 Andreas Müller
         * ConcurrentModificationException occurring at different places fixed
267
         * Incorrect handling of "show descriptions only for field units" fixed
268
         * Missing "id in vocabulary" in term labels fixed
269 1 Andreas Kohlbecker
         * Freetext filter for name relationship type selection in name relationship dialogue fixed
270 560 Andreas Müller
         * Exception caused by missing "number of rows in status dropdown" fixed
271 558 Andreas Müller
         * Exception when opening orphaned names in name bulk editor from search result fixed
272
    
273 546 Andreas Müller
274 561 Andreas Müller
{{ref_issues(-q:Release5.14 , id, subject, status)}}
275 533 Andreas Müller
276 1 Andreas Kohlbecker
## CDM Platform 5.13 (released March 23th, 2020)
277 551 Andreas Kohlbecker
278 533 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 284 , -c)}}*
279
280 563 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.13.1/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.13.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.13.0/)
281 1 Andreas Kohlbecker
282 548 Andreas Kohlbecker
**What's new?**
283 549 Andreas Kohlbecker
  
284 1 Andreas Kohlbecker
* **Data Portal**
285 549 Andreas Kohlbecker
    * A new image viewer for the dataportal is now available. The new image viewer uses the [iiif](https://iiif.io/) conform [Universalviewer](http://universalviewer.io/).   
286
    * Several bugfixes regarding security and display of structured descriptions etc...
287 548 Andreas Kohlbecker
288
* **Import/Export**
289 552 Andreas Müller
    * DarwinCoreArchive: Categorical and quantitative data added to export
290 548 Andreas Kohlbecker
291 1 Andreas Kohlbecker
* **CDM Library**
292 552 Andreas Müller
    * Caching of in-references for nomenclatural references: only author's family name (without initials) is used now if available
293
    * Some improvements to the rights&roles management for editing of references
294
    * Bugfixes:
295
         * Names without ranks not found in taxon searches
296
         * Find best matching (in terms of size) image representation fixed/improved
297
         * some further bugfixes
298
         
299 1 Andreas Kohlbecker
* **TaxEditor**
300 552 Andreas Müller
     * Fix for failing connections (this might be the reason for many unclear errors that occurred in the past)
301 553 Andreas Müller
     * MacOS X version fixed (TaxEditor available for MacOS X again)
302 552 Andreas Müller
     * Search in bulk editors now also works on abbreviated title(caches)
303
     * Some improvements to the distribution editor
304 553 Andreas Müller
     * Some improvements to preference pages
305 555 Andreas Müller
     * Freetext search for all dropdown boxes available now
306 553 Andreas Müller
     * Search result view moved to the bottom of taxon navigator view (as default)
307
     * Taxon navigator allows open-in for multi-selection for name editor and distribution editor
308
     * Suggested file name for DwC-A export improved
309 555 Andreas Müller
     * Move-to functionality improved in term editor and term tree editor
310 552 Andreas Müller
     * Bugfixes:
311 1 Andreas Kohlbecker
         * Names without ranks not found in search
312 553 Andreas Müller
         * NameInSource only added after moving factual data if requested by the user
313
         * Measurment units added to quantitative data in descriptive data matrix editor
314
         * Automatically refresh available-specimen list for descriptive data matrix if descriptive dataset changes
315
         * Name features not visible in taxon factual data view anymore, but only in name factual data view
316
         * Inheriting sec-reference for root taxa from classification reference works again
317 555 Andreas Müller
         * Selection list for entering states for categorical data is sorted now
318
         * Deleting specimen descriptions possible now
319 556 Andreas Müller
         * Fix for deleting name types
320 550 Andreas Kohlbecker
321 548 Andreas Kohlbecker
* **Web editor (Phycobank registration UI)**
322
    * Bug fix in reference editor 
323 1 Andreas Kohlbecker
    
324 547 Andreas Müller
325 1 Andreas Kohlbecker
{{ref_issues(-q:Release5.13 , id, subject, status)}}
326
327 561 Andreas Müller
## CDM Platform 5.12 (released Jan 20th, 2020)
328 533 Andreas Müller
329 542 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 283 , -c)}}*
330 496 Andreas Müller
331 563 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.12.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.12.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.12.0/)
332
333 533 Andreas Müller
**What's new?**
334 496 Andreas Müller
335 537 Andreas Müller
* **Data Model**
336
    * Added "per mm²" to measurement units
337 541 Andreas Müller
    * Allow linking to CDM taxa as information source (currently only available for algorithms, not (yet) for editing in TaxEditor)
338 537 Andreas Müller
    
339
* **Data Portal**
340
    * Structured Descriptions
341
          * Show structure descriptions in general page as pseudo feature block (position configurable)
342
          * Implement explicit page for descriptions, using dataset character/feature tree (or general feature tree) for ordering
343
          * Order states by frequency
344
          * Improve display of average values (and other statistical vlaues) and single values
345
          * Support for linking to other CDM records as information source (for aggregated desciptions)
346
    * Show type designations for synonyms
347
    * Improved handling for URLs linking to not existing/deleted records (e.g. deleted polytomous keys)
348
349
* **Import/Export**
350
    * CDM light:
351
        * Typification column added to name and homotypical group files
352
        * Handling of name identifiers fixed
353
354
* **CDM Library**
355
    * Algorithms for descriptive data aggregation (distributions/structured descriptive data) fixed/improved
356 539 Andreas Müller
    * Polynomous key generation algorithm improved
357 537 Andreas Müller
    * Fix bug for deleting a taxon used in 2 different classifications
358 1 Andreas Kohlbecker
    * Fix repair term tree sortindex
359 539 Andreas Müller
    * Allow distribution aggregation to run on taxonomic subtrees
360 537 Andreas Müller
361
* **Documentation**
362 538 Andreas Müller
    * New Documentation available at https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/PlatformDocumentation
363 537 Andreas Müller
364 1 Andreas Kohlbecker
* **TaxEditor**
365 538 Andreas Müller
    * Documentation: see above
366 537 Andreas Müller
    * Editing of structured descriptive data now available as standard feature (was experimental before)
367
            * Character editor
368
            * Term search
369
            * Matrix editor
370 1 Andreas Kohlbecker
            * GFBio and ontology imports
371 538 Andreas Müller
            * Support for "allow duplicates" for term collections
372 1 Andreas Kohlbecker
            * Note: however there are still issues especially with the Character editor which hopefully will be fixed in the next version (we recommend to contact the EDIT team before using this feature)
373 540 Andreas Müller
    * Distribution aggregation available in taxon navigator
374 538 Andreas Müller
    * Added freetext filter to combo boxes
375 1 Andreas Kohlbecker
    * Links to other CDM records as information sources visible (but not editable)
376 538 Andreas Müller
    * "Move to ..." added to term editor
377 537 Andreas Müller
    * Improved handling for different term tree types (ordered, flat, distinct, ...)
378 538 Andreas Müller
    * Specimen import: list of existing BioCase endpoints available as dropdown
379 537 Andreas Müller
    * Fix multiple bugs related to BioCase specimen import
380
    * Fix collapsing tree bug when moving taxa in taxon navigator
381 1 Andreas Kohlbecker
    * Fix bug that reference search dialog does not open under certain conditions
382
383 536 Andreas Müller
{{ref_issues(-q:Release5.12 , id, subject, status)}}
384
385 542 Andreas Müller
## CDM Platform 5.11 (released Nov 15th, 2019)
386 1 Andreas Kohlbecker
387 535 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 275 , -c)}}*
388
389 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
390
391 533 Andreas Müller
**What's new?**
392 496 Andreas Müller
393
* **Data Model**
394 499 Andreas Müller
    * Added count parameter for statics during data aggregation of categorical (structured descriptive) data
395 515 Andreas Müller
    * Added ORCID identifier to persons
396 526 Andreas Müller
    * Added CDM source links (sources may link to other information in the same CDM instance)
397 496 Andreas Müller
398
* **Data Portal**
399 500 Andreas Müller
    * Fixed polytomous key display for key parts linked from multiple places
400 506 Andreas Müller
    * Fix label formatting for specimen with missing collection identifier in specimen tables
401 512 Andreas Kohlbecker
    * Fixing problem with names having multiple nomenclatural status
402 496 Andreas Müller
403
* **Import/Export**
404 505 Andreas Müller
    * ABCD:
405
        * Fix collector and field number handling for derived units missing this data (but available in field unit record)
406 496 Andreas Müller
407
* **CDM Library**
408 517 Andreas Müller
    * Better parsing for infrageneric autonyms with authors
409 530 Andreas Müller
    * Imporved distribution and descriptive data aggregation
410 496 Andreas Müller
411 518 Andreas Müller
* **CDM Server**
412
    * Fix memory leaks
413
414 496 Andreas Müller
* **TaxEditor**
415 507 Andreas Müller
416 1 Andreas Kohlbecker
    * Taxon search: new filter to search only for published taxa 
417 510 Andreas Müller
    * Terms:
418 523 Andreas Müller
          * Tree editor for Named Areas, Ranks and Distribution Status available (to define user defined term collections and orders, including cross-vocabulary collections) - usage of such collections will be implemented in future releases
419 509 Andreas Müller
    * Taxon/Name details view
420
          * Nomenclatural code edition editable for rule considered (nomenclatural status and name relationships)
421
          * Rule considered and nomenclatural code editon visibility configurable (serverside and local)
422 1 Andreas Kohlbecker
          * Minor changes in ordering of misapplied name details view
423 529 Andreas Müller
    * Person details view
424
          * ORCID editable
425 1 Andreas Kohlbecker
    * Taxon navigator:
426
          * Taxon node doubtful flag editable via context menu
427
          * Rename view to "Taxon Navigator" (regression in one of the last releases)
428
          * Refresh problem after editing classfication label or adding child taxon to classification
429
          * Rename open-in for Taxon Node (Wizard) to ... Dialogue
430
          * Reorder and rename import menu (items)
431 532 Andreas Müller
    * Import/Export:
432 510 Andreas Müller
          * Multiple fixes for file based ABCD import
433 522 Andreas Müller
          * Fix for DwC-A export
434 519 Andreas Müller
    * Factual Data View
435
          * Visibility of "modifier" and "modifying text" is configurable now
436 1 Andreas Kohlbecker
    * Distribution Editor
437
          * Default source also used when creating an additional source for an existing source
438 496 Andreas Müller
    * User administration
439 1 Andreas Kohlbecker
          * Better error handling for user and group names with not allowed characters
440 483 Andreas Müller
441 498 Andreas Müller
{{ref_issues(-q:Release5.11 , id, subject, status)}}
442
443 533 Andreas Müller
## CDM Platform 5.10 (released Sep 23rd, 2019)
444 483 Andreas Müller
445 485 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 274 , -c)}}*
446 453 Andreas Müller
447 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
448
449 484 Andreas Müller
 **What's new?**
450
451
* **Data Portal**
452 489 Andreas Kohlbecker
    * Taxon section in name page can be suppressed via settings.
453
    * Bug fix of a regression related to the display of DOIs and publication reference links.
454 484 Andreas Müller
455
* **Import/Export**
456 488 Andreas Kohlbecker
    * CDM light export:
457 492 Katja Luther
        * type designation export differs between textual and specimen type designation
458 493 Katja Luther
    * Biocase search:
459
        * add possibility to search for Higher Taxon
460 1 Andreas Kohlbecker
461 489 Andreas Kohlbecker
* **CDM Library**
462 488 Andreas Kohlbecker
    * Bugfixes and code maintenance
463
        * Providing the default user role USER_MANAGER to all databases.
464
465 1 Andreas Kohlbecker
* **TaxEditor**
466
    * Bugfix for swap taxon and synonym
467 489 Andreas Kohlbecker
    * Further improvements to preference handling 
468 488 Andreas Kohlbecker
    * Search dialogue for distribution areas works with abbreviations
469 1 Andreas Kohlbecker
    * Old taxeditor documentation made available.
470
471
* **Web editor (Phycobank registration UI)**
472 488 Andreas Kohlbecker
    * Name relations and nomencaltural status now offering fields to mention the nomenclatural code edition. 
473
    * Layout and user experience (UX) issues in the UI have been solved (#8014, #8342, #8377). 
474
    * Fixing important bug to prevent data loss and corruption (#8462, #8527)
475 1 Andreas Kohlbecker
476 486 Andreas Müller
{{ref_issues(-q:Release5.10 , id, subject, status)}}
477
478 494 Andreas Müller
## CDM Platform 5.9 (released Aug 29th, 2019)
479 453 Andreas Müller
480 481 Andreas Müller
*Issues: {{ref_issues(-q:Release5.9 , -c)}}*
481 453 Andreas Müller
482 563 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.9.0/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.9.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.9.0/)
483 453 Andreas Müller
484 563 Andreas Müller
**What's new?**
485
486 477 Andreas Müller
* **Data Model**
487 473 Andreas Müller
 * Term structure improved to allow all types of relations between terms and to allow vocabulary independent term collections/graphs (partly implemented in TaxEditor)
488
 * Add state vocabulary for presence/absence of a biological structure
489
 * Improve structure for inapplicableIf handling in character trees used for descriptive data matrices/datasets and for indentification keys
490
 * Improve authority handling in data model (preparation only)
491 480 Andreas Kohlbecker
 * Allow certain patterns only as usernames (Latin letters, numbers, '_', '.' are allowed)
492 473 Andreas Müller
 * Doubtful (placement) flag for taxon nodes
493 480 Andreas Kohlbecker
 * List of nomenclatural code editions (e.g. Melbourne Code) additional to rule considered in nomenclatural status, name relationship and hybrid relationship
494
 * Fields added to allow externally managed terms and vocabularies (not yet in TaxEditor)
495 474 Andreas Müller
 * Fields for textual/verbatim type designation information
496
 * Possibility to add fixed markers/types to a description (e.g. to mark a description as a computed/aggregated description which should not be editable)  
497 465 Patrick Plitzner
498 473 Andreas Müller
499 465 Patrick Plitzner
* **Data Portal**
500 479 Andreas Kohlbecker
 * Adapted to term structure changes in the data model.
501
 * Improved ordering of type designations in the name and taxon pages.
502
 * Harmonization and improvement of the specimen display in various parts of the portal, including better intra portal linking.
503 1 Andreas Kohlbecker
 * Performance improvement regarding to type designations.
504 479 Andreas Kohlbecker
 * Auto-zooming of maps has been fixed for different map projections.
505 480 Andreas Kohlbecker
 * Improved layout of the registration page to clearly show the nomenclatural act.
506
 * Classification tree horizontally automatically scrolls to active entry.
507 1 Andreas Kohlbecker
508
* **Import/Export**
509 477 Andreas Müller
 * CDM light export:
510
       * add textual/verbatim type designations
511
       * some minor adaptations
512
513
* **CDM Library**
514 476 Andreas Müller
 * Fix and improve polytomous key generation (to be used from descriptive data set, experimental feature)
515 474 Andreas Müller
 * Multiple improvements and bug fixes to web services 
516
517 1 Andreas Kohlbecker
* **TaxEditor**
518
 * Add textual/verbatim type designations to details view
519 473 Andreas Müller
 * Use feature states for applicability of term nodes
520
 * Improvement and harmonization of serverside and local preferences
521 465 Patrick Plitzner
 * Update name in source data when changing an accepted taxon into a synonym (configurable)
522 1 Andreas Kohlbecker
 * Allow setPublish for subtree to include misapplied names, pro parte synonyms and exclude hybrids
523 474 Andreas Müller
 * Seperate term tree editor for each term type available
524 479 Andreas Kohlbecker
 * Warning if misapplied names or pro parte synonyms are used/linked from more then 1 other taxon.
525 474 Andreas Müller
 * Bugs.
526 1 Andreas Kohlbecker
       * fixed term order of term trees
527 465 Patrick Plitzner
528 453 Andreas Müller
{{ref_issues(-q:Release5.9 , id, subject, status)}}
529 481 Andreas Müller
530 453 Andreas Müller
## CDM Platform 5.8 (released on Jul 19th, 2019)
531 462 Andreas Müller
532 454 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 273 , -c)}}*
533 446 Andreas Müller
534 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
535
536 453 Andreas Müller
 **What's new?**
537 1 Andreas Kohlbecker
538 453 Andreas Müller
* **Data Portal**
539
540 460 Andreas Müller
 * cm added as measurment unit
541
542
* **Data Portal**
543
544 457 Andreas Kohlbecker
    * Improvements to the media page related to source references and the media title
545
    * Name page shows more information: name relations, type designation with specimen map, related taxa, nomenclatural acts (registrations)
546 1 Andreas Kohlbecker
        * The automatic redirect behavior to the taxon page is now configurable
547
    * Registration search:
548 460 Andreas Müller
        * Support for filtering by references
549
        * Improved search by type designation status and name
550 457 Andreas Kohlbecker
    * Registration page:
551
        *  Subheadline to show the type of the nomenclatural event
552
    * General layout improvements
553
        * Links to reference pages as unobtrusive icon link 
554
    * Maps:
555 463 Andreas Kohlbecker
        * Support for [OpenTopoMap](https://opentopomap.org/#map=5/49.000/10.000) 
556 464 Andreas Kohlbecker
        * ![](open-topo-map-berlin.png)
557 457 Andreas Kohlbecker
    * User interface to search the Unified Taxonomic Information Service ([UTIS](https://cybertaxonomy.eu/eu-bon/utis/)) 
558
    * Bugfixes related to 
559
        * Name relations
560
        * Nomenclatural status
561
        * Type designations
562 453 Andreas Müller
563 461 Andreas Müller
* **CDM Server**
564
565
 * improved error detection when failing to start
566
567 451 Andreas Müller
* **TaxEditor**
568 1 Andreas Kohlbecker
569
 * improved deduplication for references in name editor (hotfix 5.7.3)
570 460 Andreas Müller
571
 * handling of preferences improved
572
573
       * consistent model to always allow default and specific values and to handle override more intuitive
574
       * area specific status list preferences for distribution data
575
       * status list serverside preferences for distribution data handled in details view
576
       * ranks as serverside preferences
577
       * nomenclatural status as serverside preferences
578
       * visibility of fields Source.idInSource and Source.IdNamespace as preferences 
579
580
 * CDMlight export
581
582
       * includes excluded flag and excluded notes
583
       * sortindex for taxa added
584
       * improvements in ABCD import 
585
586
 * Terms allow adding media in term editor
587 461 Andreas Müller
588
 * Media:
589
590
        * media loaded asynchronously to improve performance (has open issues)
591 451 Andreas Müller
592
 * Bugs
593
594 1 Andreas Kohlbecker
       * exception/freezing when opening name in source search dialogue (hotfix 5.7.3)
595
       * recognize again the previous state (opened sections) of details view and supplemental data view (hotfix 5.7.3)
596 451 Andreas Müller
       * refresh in name bulk editor after search (hotfix 5.7.3)
597 1 Andreas Kohlbecker
598 458 Andreas Kohlbecker
* **Web editor (Phycobank registration UI)**
599
600
    * Registration list view with reference filter
601
    * Curators and admins can edit arbitrary Annotations (Notes)
602 459 Andreas Kohlbecker
    * Bugfixes related to 
603
        * user permissions
604 458 Andreas Kohlbecker
        * ...
605
     
606
607 1 Andreas Kohlbecker
{{ref_issues(-q:Release5.8 , id, subject, status)}}
608
609 462 Andreas Müller
## CDM Platform 5.7 (released on May 6th, 2019)
610 453 Andreas Müller
611 445 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 269 , -c)}}*
612
613 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
614
615 449 Andreas Müller
 **What's new?**
616
617 438 Andreas Müller
* **Data Portal**
618 447 Andreas Müller
619 1 Andreas Kohlbecker
 * Bugfix for setting the feature tree for the general page
620 447 Andreas Müller
621 448 Andreas Müller
* **TaxEditor**
622
623
 * some urgent bugfixes for character matrix editing 
624 447 Andreas Müller
 * possibility to define area specific distribution status for distribution editor (UI for setting this preference is still missing)
625 448 Andreas Müller
 * some bugfixes
626 450 Andreas Kohlbecker
627
* **Web editor (Phycobank registration UI)**
628
629
    * All comboboxes for references are making use of the ellypsed reference labels
630 447 Andreas Müller
    * The TaxonNamePopeditor now supports editing the nomenclatural status
631
    * Name type status filter in registration search simplified
632 1 Andreas Kohlbecker
    * and some bugfixes
633 447 Andreas Müller
634 453 Andreas Müller
{{ref_issues(-q:Release5.7 , id, subject, status)}}
635 447 Andreas Müller
636 1 Andreas Kohlbecker
## CDM Platform 5.6 (released on Apr 12th, 2019)
637 408 Andreas Müller
638 1 Andreas Kohlbecker
*Issues: {{ref_issues(-f:fixed_version_id = 268 , -c)}}*
639
640 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
641 1 Andreas Kohlbecker
642 438 Andreas Müller
 **What's new?** 
643 407 Andreas Müller
644 432 Katja Luther
* **Data Model**
645 443 Andreas Müller
 * feature trees have been refactored to typified Term trees which support any type of terms
646
 * added term types to term vocabularies
647
 * added structure, property and regional modifier as new term types
648 432 Katja Luther
649
* **Data Portal**
650 443 Andreas Müller
 * added time period for description elements in data portals
651
 * improve user profile settigs in cdm_dataportal
652
 * harmonize registrationId links and make testing easier
653 432 Katja Luther
 * improve image gallery settings labeling
654
655
* **Import/Export**
656 443 Andreas Müller
 * name facts added to cdm light export
657 432 Katja Luther
658
* **TaxEditor**
659 443 Andreas Müller
 * term editor 
660
        * add "plural" to representations
661
        * new term editor for structures, properties, regional modifers
662
 * feature/term tree editor 
663
        * feature trees became more generic and support all types of terms (not yet fully available in editor)
664
        * restrict editor according to typified term trees
665
 * name editor
666
         * creating duplicates of specimen type designations
667
 * update of open data after updating subtree operations (update publish flag and update sec reference)
668
 * user selection dialogs for group members filter out already added users
669
 * name facts now editable, when selecting name in details view and in name bulk editor
670
 * sources can be added to type designations
671 1 Andreas Kohlbecker
 
672 443 Andreas Müller
 * Bugs
673 1 Andreas Kohlbecker
674 443 Andreas Müller
       * changing of title cache of a factual data set was not possible
675
       * selection dialogs for teams or persons did not filter out institutes
676
       * insufficient rights lead to missing focus in name editor
677
       * fixed title cache issues for taxon descriptions
678 432 Katja Luther
679 442 Andreas Müller
* **Web editor (Phycobank registration UI)**
680 444 Andreas Kohlbecker
    * User friendly message when accessing editors with unsufficient permissions (#8218)
681
    * Registry curator can unlock a published registration for minor changes (#8192)
682
    * Solving a major performance problem related to uninomial und specific epithet comboboxes (#8176)
683
    * Better lables for popup editors breadcrumbs  (#7962)
684
    * ReferenceEditor: optional validation for completenes of Partial values in datePublished (#7968)
685
    * Create blocking relations for un-registered names which are to be used in nomenclatural acts (#8050)
686
    * TaxonNamePopEditor: name part field visibility not correct for all ranks (#7963)
687
    * ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL (#8149)
688
    * ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked (#8191)
689
    * Bugfixes:
690
        * Fixing enabled state of edit buttons in combobox widgets (#8217)
691
        * Solving multiple problems related to problems with hibernate session an transaction handling
692
        * Problem with inserting a section - inReference is "lost" (#8097)
693
        * Error saving name type designation editor due to problem in poupeditor context (#8099)
694
    
695 432 Katja Luther
696
{{ref_issues(-q:Release5.6 , id, subject, status)}}
697
698 420 Andreas Müller
## CDM Platform 5.5 (released on Feb 14th, 2019)
699 407 Andreas Müller
700 1 Andreas Kohlbecker
*Issues: {{ref_issues(-f:fixed_version_id = 267 , -c)}}*
701
702 439 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.5.1/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.5.3/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.5.0/)
703 395 Andreas Müller
704 438 Andreas Müller
 **What's new?**
705 1 Andreas Kohlbecker
706 428 Andreas Müller
* **Data Model**
707 1 Andreas Kohlbecker
708 422 Andreas Müller
 * removed/added some attributes from certain attribute types (e.g. removed *date published* and *authorship* from journals and print series, added ISBN to Proceedings)
709
710 423 Andreas Müller
* **CDM Server**
711
712
 * Available as docker container
713
714 422 Andreas Müller
* **Import/Export**
715
716 420 Andreas Müller
 * taxon (tree)index added to CDMlight export
717
718 418 Andreas Müller
* **Dataportal**
719 409 Andreas Müller
720 419 Andreas Müller
 * improved registration page, now showing the complete nomenclatural act data and registration metadata
721 418 Andreas Müller
     * human feedback to users in case a registration is not public or does not exist
722
 * improved diplay of type designations
723
 * improved display of registrations in lists like in search results and reference page
724
 * reference page shows name relations
725
 * details page for field units improved 
726
 * some bugs fixed
727 409 Andreas Müller
728
* **TaxEditor**
729 410 Andreas Müller
730 1 Andreas Kohlbecker
 * Distribution editor
731
732 422 Andreas Müller
     * use new table frame work (so called NAT tables), offering improved usabilty and functionality like filtering, column freezing etc
733
     * improved area selection dialog
734
     * bug fixes
735 1 Andreas Kohlbecker
736 422 Andreas Müller
 * Preferences
737
     
738
     * new menu structure for local preferences (not fully completed yet)
739
     * serverside preferences and local preferenced unsing same user interface pages
740
     * translation to German completed
741
     * improved handling of "(allow) override" functionality
742
     * improved handling of default values
743
     * (the last 2 will be further developed into 1 system with one of the next releases)
744
745
746 414 Andreas Müller
 * References
747 1 Andreas Kohlbecker
     
748 412 Andreas Müller
     * DOI available as attribute
749 410 Andreas Müller
     * warning for multiple usage of references also in details view (not only in editing dialog)
750 422 Andreas Müller
     * improved attribute selection for specific reference types (see data model section above)
751 1 Andreas Kohlbecker
 
752 420 Andreas Müller
 * Rights&Roles
753
     
754
     * Role "remoting" added, only users belonging to a group with role remoting are allowed to open data in TaxEditor 
755 414 Andreas Müller
756
 * Term editor
757 410 Andreas Müller
     
758 409 Andreas Müller
     * performance improved
759 1 Andreas Kohlbecker
     * 2nd symbol for terms available
760 424 Andreas Müller
     * Bugs/exceptions when moving or adding terms fixed 
761 414 Andreas Müller
 
762
 * Feature tree editor
763
764 1 Andreas Kohlbecker
     * drag&drop from (feature) term editor available
765
     * Right click menu added (replacement for buttons)
766
     * copy&paste added (for the rare case that a feature should be reused within the tree)
767
768 424 Andreas Müller
 * Name editor
769 1 Andreas Kohlbecker
770 430 Patrick Plitzner
     * invalid designations available similar to pro parte synonyms and misapplied names (formatting not yet correct)
771 424 Andreas Müller
772
 * Description/Character Editor (experimental, multiple improvements)
773
774
 * Taxon node wizard improved
775
776
 * Automated deduplication of references and authors works also for new taxon dialog (before it worked only in name editor)
777
778 416 Andreas Kohlbecker
 * Bugs
779 422 Andreas Müller
   
780
     * Improved (title)cache updating
781 1 Andreas Kohlbecker
     * Empty dialog for File -> New -> Reference -> Change reference type fixed
782
     * Some exceptions thrown in term editor fixed
783 424 Andreas Müller
     * sometimes invisible deduplication icons fixed in bulk editor
784
     * handling of deleting new+unsaved records fixed in bulk editor    
785 416 Andreas Kohlbecker
786 429 Andreas Kohlbecker
* **Web editor (Phycobank registration UI)**
787 425 Andreas Kohlbecker
   * Reference editor
788 427 Andreas Müller
        * Reference editor: Label In proceedings in InProceedings missing
789
        * ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
790
        * ReferencePopupEditor: apply sensible reference type pre-set for in references 
791
        * ReferenceEditor: filter inReferences by applicable reference type
792
        * ReferenceEditor misses institution, organization and school fields
793 425 Andreas Kohlbecker
   * TaxonNameEditor: 
794
        * Entering data for name parts (genus, specific epithet) is now required
795
        * Exclude current name from name relationship comboboxes  
796
        * orthographic name correction available
797
   * Registration start view:
798 427 Andreas Müller
        * Reference combobox to offer two search modes
799
        * Exclude irrelevant reference types from list of existing publications
800 425 Andreas Kohlbecker
   * Registration Workingset Editor
801
        * A couple of severe bugs fixed
802
        * realiably setting registration date when status is set to PUBLISHED
803
   * Registration search 
804
        * Registration items in list view is using the wrong button icons for blocking regs and validation errors
805
   * SpecimenTypeDesignationEditor
806
        * Display of altitude fixed and also a related problem when saving
807
        * GeoLocationField uses OpenTopoMap
808
        * Collection date supports timespans
809
        * Improved user feedback
810
        * Geolocation 
811 427 Andreas Müller
             * Suopport for reference systems
812
             * Map shows error radius
813 425 Andreas Kohlbecker
   * cdmlib-vaadin UI widgets
814
        * Reference combobox options with ellypsed reference titles 
815 1 Andreas Kohlbecker
        * ToOneRelatedEntityCombobox validation fixed, layout problems solved
816 425 Andreas Kohlbecker
        * PopupEditors notify user on editor changes and allow the user choose from discard or save in a dialog
817
        * PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
818
   * Label improvements
819
   * Permission and security improvements
820
   * Performance improvements
821
   * Classification fragments are managed in a non cyclic directed graph, this mainly improves the search capabilities 
822 427 Andreas Müller
        * Automatic management of the graph during editing of RegistrationStatusFieldInstantiator  
823 425 Andreas Kohlbecker
   * Bugs fixed:
824
        * Massive memory consumption problem solved
825
        * Multiple representations problems fixed 
826
        * LazyInitializationExceptions fixed
827
        * Fixing problems with possibly corrupted hiberante sessions
828
   * Complete removal of the rejected messaging prototype implementation
829
     
830 416 Andreas Kohlbecker
831 415 Andreas Kohlbecker
{{ref_issues(-q:Release5.5 , id, subject, status)}}
832
833 395 Andreas Müller
## CDM Platform 5.4 (released on Oct 25th, 2018)
834 1 Andreas Kohlbecker
835
*Issues: {{ref_issues(-f:fixed_version_id = 266 , -c)}}*
836 393 Andreas Müller
837 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
838 1 Andreas Kohlbecker
839 395 Andreas Müller
 **What's new?**
840
841 396 Andreas Müller
* **Documentation**
842
843
 * online webservice documentation was broken since 5.3. Fixed.
844
845 395 Andreas Müller
* **Dataportal**
846
847 396 Andreas Müller
 * display of related taxa (misapplied names, pro parte synonyms, concept relations)
848
       * sort order
849
       * hyperlink to related taxa was missing
850
       * further links (???)
851
852 401 Andreas Müller
 * phycobank/name registration related
853 404 Andreas Kohlbecker
       * search via taxon graph (#7835)
854 396 Andreas Müller
       * improvements on name registration page
855 404 Andreas Kohlbecker
       * hide unpublished names, types and registrations (#7723)
856 396 Andreas Müller
857 395 Andreas Müller
* **TaxEditor**
858 406 Andreas Müller
 
859
 * restart menu available
860 397 Andreas Müller
 * distribution editor
861
862
      * further improvements, now it is not an experimental feature anymore (but still has some open issues, we recommend to contact us before using)
863 398 Andreas Müller
      * improved area selection (still some issues)
864
      * predefined source selection
865 399 Andreas Müller
      * support supplemental data
866 405 Andreas Kohlbecker
      * support various symbols/labels for areas and status
867 398 Andreas Müller
868 1 Andreas Kohlbecker
 * performance
869
      * faster loading of details view and other views (open issues exist)
870
      * faster creation of factual data view right click menu
871 397 Andreas Müller
872 398 Andreas Müller
 * bulk editor
873
      * multiple columns available for display and sorting
874
      * symbol indicating deduplication status
875
 
876 400 Andreas Müller
 * navigator
877 399 Andreas Müller
      * set excluded and unplaced via right click menu
878
879 398 Andreas Müller
 * name relationships allow reverse direction
880 1 Andreas Kohlbecker
 * hybrid flags enabled/disabled rank specific
881 401 Andreas Müller
 * determination events can now have sources  
882 402 Andreas Müller
 * factual data
883 397 Andreas Müller
      * improved labels for descriptions including sources
884 1 Andreas Kohlbecker
      * available common name references can be explicitly marked
885
      * reference search on alternative identifiers possible parallel to title (cache) search
886
      * add sources to descriptions when creating them (explicit menu item)
887 398 Andreas Müller
      * reorder menu ("new" on top, ...)
888 405 Andreas Kohlbecker
      * available distribution area vocabularies and status and common name areas definable via DB preferences
889 400 Andreas Müller
890 401 Andreas Müller
 * further database sided preferences implemented (there are still some bugs, we recommend contacting us before using DB sided preferences)
891 397 Andreas Müller
      * exclude specimen, media, import/exports, multiple classification functionality
892 1 Andreas Kohlbecker
      * further attributes for simplified name details view
893 397 Andreas Müller
      * distribution area vocabulary selection
894 1 Andreas Kohlbecker
      * distribution status selection
895
      * checklist perspective as start perspective
896
      * simplify sources view (hide IdInSource and IdNamespace)
897
898 402 Andreas Müller
 * client side (local) preferences stored database specific
899 401 Andreas Müller
      
900 402 Andreas Müller
      * if users use multiple databases client side preferences often need to be different depending on the database in use; now also client side preferences are stored for each database and not for the complete TaxEditor installation anymore (only valid for newly changed preferences)
901 401 Andreas Müller
902 402 Andreas Müller
 * NOTE: preference handling (server and client side) still has some severe open issues, we will try to work on them for the next release, so we recommend to handle with care until then
903 401 Andreas Müller
904 400 Andreas Müller
 * bugs:
905
      * taxon node editor does not allow editing existing taxon data anymore, only taxon node data
906 397 Andreas Müller
      * right click menu sometimes does not show up in name editor
907
      * exceptions when editing terms in term editor
908 1 Andreas Kohlbecker
      * freezing login dialog if no connection established
909
      * exception after saving bulk editor
910 397 Andreas Müller
      * exception during specimen search in bulk editor
911
      * exception when canceling "move elements" in factual data view
912 396 Andreas Müller
      
913
914 395 Andreas Müller
* **Browser Editor (Vaadin)**
915 396 Andreas Müller
916 403 Andreas Kohlbecker
 * performance
917
      * big workingsets in the RegistrationWorkingSetEditor are loading much faster now. This improvement also has positive effects on other editors (#7785)
918
 * usability
919
      * multiple classifications and classification fragments can be merged into a common taxon graph structure. This graph first of all allows searching names by higher ranked names. Edits of names are automatically tracked in the graph. (#7834)
920
      * New mode for the TaxonNameEditor: `VALIDATE_AGAINST_HIGHER_NAME_PART`. This mode requires that a higher name must exising in the data base before it can be used as name part. (#7783, #7648, #7831, #7830, 7845)
921
      * improving some labels in the UI
922 1 Andreas Kohlbecker
 * bugs
923 403 Andreas Kohlbecker
      * memory issues (#7036, #7036)
924
      * problem with session attributes in different CDM Instances
925 395 Andreas Müller
926
927
{{ref_issues(-q:Release5.4 , id, subject, status)}}
928 379 Andreas Müller
929 394 Andreas Müller
930 1 Andreas Kohlbecker
## CDM Platform 5.3 (released on Sep 17th, 2018)
931 393 Andreas Müller
932 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
933 381 Andreas Müller
934 379 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 265 , -c)}}*
935
936
 **What's new?**
937
938
* **General**
939
940 385 Andreas Müller
  * Allow handling "continued" for reference date published for dates like *2017+*
941 379 Andreas Müller
  * Allow filtering some webservices on taxonomic subtrees
942 1 Andreas Kohlbecker
943 379 Andreas Müller
* **Dataportal**
944 384 Andreas Müller
945
 * Creation of data portals with a filter on taxonomic subtrees (e.g. families)
946 387 Andreas Müller
 * Formatting of misapplied names and invalid designations refactored (and hopefully improved) 
947 1 Andreas Kohlbecker
 * Improved advanced search on taxa with geo-filter, * on start does work now, but still remaining issues for searches including * and whitespace
948 387 Andreas Müller
 * Improved handling of specimen with protected cache
949 379 Andreas Müller
 * Tree View for specimen data (still experimental)
950 388 Andreas Müller
 * Bugs
951 379 Andreas Müller
     * Fix for aggregated images not being shown anymore
952
     * Fix empty bibliography sections
953 388 Andreas Müller
     * Fix disabling of determination keys block in tab-less taxon pages
954 379 Andreas Müller
955
956
* **Export**
957
958 1 Andreas Kohlbecker
 * Improved handling for types in CDM light export
959 380 Andreas Müller
 
960 379 Andreas Müller
* **TaxEditor**
961
962 390 Andreas Müller
 * "Continued" for date published (see General section) available in TaxEditor
963 379 Andreas Müller
 * External links for sources (not yet implemented in data portal)
964 1 Andreas Kohlbecker
 * Label changes
965 379 Andreas Müller
 * Consistent handling of Description and DescriptionElement **sources**
966 1 Andreas Kohlbecker
 * Warning if Media are linked multiple times
967 379 Andreas Müller
 * Improved synchronization between views when moving factual data
968 389 Andreas Müller
 * Improved formatting of misapplied names and pro parte synonyms (synchronized with formatting in data portal)
969 379 Andreas Müller
 * Ordering misapplications with defined alphabetic order
970
 * Editing of supplemental data for descriptive data sets
971
 * Specimen Tree Editor collapsable and expandable
972
 * Bugs
973
      * Protected cache handling in details view for References
974
      * Exception when deleting a polytomous key
975
      * Dialog to avoid creating users with duplicated usernames
976
      * Exception when trying to create a new datasource
977
978
* **Browser Editor (Vaadin)**
979 391 Andreas Kohlbecker
    
980
    * Reference editor offers field for adding notes
981
    * Multiple important bug fixes to increase the overall stability and reliance of the registration system
982
        * Preventing from creation of empty registrations 
983 392 Andreas Kohlbecker
        * Problem with inserting several new authors into a new author team solved
984 379 Andreas Müller
        * Memory leak eliminated 
985 383 Andreas Müller
986 373 Andreas Müller
{{ref_issues(-q:Release5.3 , id, subject, status)}}
987
988 1 Andreas Kohlbecker
## CDM Platform 5.2 (released on Aug 17th, 2018)
989 382 Andreas Müller
990 563 Andreas Müller
*Downloads:* Ask the edit team for backups of this version
991 373 Andreas Müller
992
*Issues: {{ref_issues(-f:fixed_version_id = 263 , -c)}}*
993
994
 **What's new?**
995
996
* **General**
997 376 Andreas Müller
998
 * Some improvements for ABCD import
999
 * Some minor improvements for CDM light export
1000 373 Andreas Müller
 * New webservice for formatted taxon relationships (misapplications, pro parte synonyms, concept relationships) - available in data portal in next version
1001
1002
* **Dataportal**
1003 374 Andreas Müller
1004
 * Reference page
1005
     
1006
     * proper formatting of taxon names in registration summary
1007
     * proper handling of date published without end date
1008
1009
 * Specimen tab
1010
     
1011
     * remove "associated with" in compressed table
1012 1 Andreas Kohlbecker
     * correct handling of freetext in altitude, distance to gorund and watersurface in default specimen table
1013
     * correct handling of missing values for numeric values (do not show 0 anymore) in default specimen table
1014 376 Andreas Müller
 
1015
 * Name Registration
1016
    
1017 1 Andreas Kohlbecker
     * TBC
1018
1019 376 Andreas Müller
* **TaxEditor**
1020
  
1021
 * Bulk editor
1022
     
1023
     * improve new implementation with so called NAT tables
1024 1 Andreas Kohlbecker
     * asynchronous loading of data for large datasets
1025 376 Andreas Müller
1026
 * specimen
1027
     
1028
     * remaining issues for determinations in details view
1029 1 Andreas Kohlbecker
 
1030 375 Andreas Müller
 * Bugs
1031
1032
     * Taxa, being misapplied names or pro parte synonyms elsewhere, always show misapplied name details view
1033 1 Andreas Kohlbecker
     * specimen server preferences are not saved
1034
     * exception handling for media with corrupted metadata
1035 376 Andreas Müller
     * exception out of bounds exception after deleting record in bulk editor
1036
     * problems with progress monitor for setting publish flag for subtree (maybe some issues open)
1037
     * dragging a misapplication on itself throws exception
1038 1 Andreas Kohlbecker
     * multiple representations exception when adding annotation in bulk editor
1039 376 Andreas Müller
1040
 * experimental features 
1041 377 Andreas Müller
     
1042
     * data aggregation in character matrix
1043 376 Andreas Müller
     * improved workflow for editing descriptive data 
1044 375 Andreas Müller
1045 376 Andreas Müller
* **Browser Editor (Vaadin)**
1046
    
1047 373 Andreas Müller
     * TBC: name registration issues 
1048
1049 358 Andreas Müller
{{ref_issues(-q:Release5.2 , id, subject, status)}}
1050
1051
## CDM Platform 5.1 (released on Jun 27th, 2018)
1052 372 Andreas Müller
1053 440 Andreas Müller
*Downloads:* [TaxEditor](https://dev.e-taxonomy.eu/download/taxeditor/5.1.2/), [CDM Server](https://dev.e-taxonomy.eu/download/cdmserver/5.1.0/), [Data Portal](https://dev.e-taxonomy.eu/download/dataportal/5.1.0/)
1054 367 Andreas Müller
1055 358 Andreas Müller
*Issues: {{ref_issues(-f:fixed_version_id = 261 , -c)}}*
1056
1057
 **What's new?**
1058
1059 1 Andreas Kohlbecker
* **General**
1060 359 Andreas Müller
1061
 * update script to model 5.0 fixed for PostGreSQL databases
1062
 * freetext search indexing fixed after change in misapplied names
1063
 * term related webservices include language information 
1064
1065
* **Dataportal**
1066
1067
 * Withheld taxa with publish=false from dataportal results (not yet implemented for freetext search on factual data)
1068
 * External Links fixed
1069
 * Default visibility for pro parte and partial synonyms and misapplied names
1070
 * Find pro parte and partial synonyms in search
1071
 * Creation date for media visible
1072 358 Andreas Müller
1073 1 Andreas Kohlbecker
* **TaxEditor**
1074 359 Andreas Müller
1075
 * Recently used references list for reference search dialog (bibliographic references only)
1076
 * Find pro parte and partial synonyms in search
1077
 * Default value for taxon publish flag configurable (true, false, inherit)
1078
 * Allow multiple selections for moving taxa
1079
 * Progress monitoring for moving taxa
1080
 * Default nomenclatural status is nom. illeg.
1081
 * Further support for eclipse4
1082
 * Bulk editor
1083
     * change table type (using so called NAT tables now, which are more powerful)
1084
     * sorting for columns by clicking on column headers
1085
     * multi select for deduplication more user friendly
1086
 * Bugs
1087
      * fixed lazy loading exception for misapplied names with type specimen
1088
      * incorrect title cache creation for persons with protected title cache
1089
      * new team member added to the end of the list now
1090
      * some File->New dialogues fixed
1091 358 Andreas Müller
1092 362 Andreas Kohlbecker
* **Browser Editor (Vaadin)**
1093
    * Improved consistency in taxon names by restricting the higher name parts like genus name or species epithet to names which are already known to the system. (#7364)
1094
    * Support for validations and replaced synonyms in the TaxonNameEditor
1095
    * Login dialog can be submitted by pressing the enter key
1096
    * Fields visibility in the ReferenceEditor adapts to the Reference type
1097
    * A Field for editorial notes is now available in TaxonName , NameType and SpecimenType editors
1098
    * Bugs
1099
        * Readonly state problems fixed
1100 358 Andreas Müller
        * Fixing incomplete terms
1101 361 Andreas Kohlbecker
1102
{{ref_issues(-q:Release5.1 , id, subject, status)}}
1103 344 Andreas Müller
1104 1 Andreas Kohlbecker
## CDM Platform 5.0 (released on May 16th, 2018)
1105 355 Andreas Müller
1106 343 Andreas Müller
*Issues: {{ref_issues(-q:Release5.0, -c)}}*
1107 356 Andreas Müller
1108 343 Andreas Müller
 **What's new?**
1109 353 Andreas Müller
1110
* **General**
1111 349 Andreas Müller
1112 1 Andreas Kohlbecker
 * Project Website (cybertaxonomy.org) migrated to Drupal 8
1113 353 Andreas Müller
 * Demo servers renamed to demo I and demo II
1114
 * Improved performance for saving
1115
1116
* **Model**
1117 345 Andreas Müller
1118
 * Micrometer added to measurement units
1119
 * Person last name and first name renamed to given name and family name
1120
 * Add second under definable symbol to defined terms (e.g. for better representations of distribution status)
1121
 * Change type of Media.mediaCreated from DateTime (single date) to TimePeriod (start and end time, freetext, ...)
1122
 * Allow time for TimePeriod (before only dates were handled) -  not yet handled in TaxEditor
1123
 * Support for zoological in-Authors
1124
 * Add verbatim date to publication date of references
1125
 * Individual count for occurrence data changed from numbers to text
1126 346 Andreas Müller
 * Added external links to sources (not yet supported in TaxEditor)
1127 1 Andreas Kohlbecker
 * Rename "WorkingSet" to "DescriptiveDataSet" and make it a so called identifiable entity (=> some further attributes like sources, extensions, ...)
1128
 * Added nomen oblitum to zoological name status vocabulary
1129
1130 348 Andreas Müller
* **TaxEditor**
1131 347 Andreas Müller
 
1132 353 Andreas Müller
 * Further migration to Eclipse4 (e4) => migration finished now except for some open issues.
1133 354 Andreas Müller
 * Hardcoded update sites to avoid problems with automated TaxEditor update in future (and for development)
1134 1 Andreas Kohlbecker
 * Download site shows version number and release date
1135 354 Andreas Müller
 
1136
 * Name editor
1137
      * Specimen Type Designation ordered by type
1138
      * Pro parte and partial synonyms handled similar to misapplied names (internally handled as concept relationships)
1139 353 Andreas Müller
      * Allow editing pro parte and partial misapplied names
1140 354 Andreas Müller
 
1141
 * References
1142
      * Reference search via alternative identifiers available
1143 1 Andreas Kohlbecker
      * References have verbatim date
1144
 
1145 353 Andreas Müller
 * Media representations have fixed order (by creation date in database)
1146 1 Andreas Kohlbecker
 * Allow opening gathering events from referencing objects view
1147 353 Andreas Müller
1148 1 Andreas Kohlbecker
 * New Dialog for editing server based preferences, including some more preferences (but still incomplete)
1149 353 Andreas Müller
1150 1 Andreas Kohlbecker
 * Deleting names and taxa for specimen determinations
1151
1152
 * Usage view migrated to e4 and fully functional again
1153
1154 353 Andreas Müller
 * Taxon navigator
1155 1 Andreas Kohlbecker
       * fully refactored underlying data model
1156
       * improve performance
1157
       * refresh mechanism improved for changes elsewhere
1158 353 Andreas Müller
       * Progress monitor and cancel for set secundum for subtree (not yet available for set publish for subtree)
1159 354 Andreas Müller
1160
 * Feature tree editor
1161
      * Multi-language support for feature tree editor
1162 353 Andreas Müller
      * Details view and supplemental data view for feature tree/nodes
1163 349 Andreas Müller
1164 353 Andreas Müller
 * Rights&Roles: drag&drop for rights on features in rights editor
1165 354 Andreas Müller
1166
 * Facts
1167
      * Fact label in fact view truncated and line breaks removed
1168 352 Andreas Müller
      * Fact have a time scope now in facts details view
1169 347 Andreas Müller
1170 1 Andreas Kohlbecker
 * Refresh:
1171
      * Taxon navigator after changes to taxa, names or sort order
1172
      * Name editors with specimen types after a specimen has been deleted
1173 349 Andreas Müller
      * Name editor after selecting a new taxon for a misapplied name
1174 1 Andreas Kohlbecker
      * Name relationships and similar data in details view after selecting a new name for a taxon
1175 353 Andreas Müller
      * Open taxa refreshed after setting secundum or publish flag for subtree
1176 348 Andreas Müller
      * Refresh reference title cache after changing in-reference title in edit dialog
1177
 
1178
 * Renaming:
1179
      * Person: lastname => family name; firstname => other/given name
1180
      * Specimen Bulk Editor => Specimen Editor (List)  and Derivative Editor => Sepcimen Editor (Tree)
1181
      * Working Set Editor => Descriptive Data Editor
1182 347 Andreas Müller
 * Distribution Editor
1183
      * Available areas as server based preferences
1184
      * Area selection dialog improved
1185
      * some further bug fixes (still some open)    
1186
      
1187
 * Bug fixes:
1188
      * Selection of nomenclatural code in "new taxon" dialog
1189
      * Accepted taxon and new synonym disappear after creating homotypic synonym
1190 1 Andreas Kohlbecker
      * Right click menus in name editor
1191
      * correct handling of doubtful in misapplied names
1192 348 Andreas Müller
      * Missing labels for gathering events in referencing objects view
1193
      * dirty flag after number recomputation in polytomous key
1194
      * saving of preferences only after pressing "Finish" button
1195
      * Exception after selecting a team after team has been merged in bulk editor
1196 1 Andreas Kohlbecker
      * Show only accepted taxa for concept relationship taxon selection and polytomous key taxon selection
1197 349 Andreas Müller
      * Exception when searching for "?" in Taxon search dialog
1198
      * Exception when creating the first node in polytomous key
1199
      * To many menu entries in a fresh name bulk editor
1200
      * Do not allow self-referencing name relationships
1201 350 Andreas Müller
      * Remove "open in ... referencing objects view" where not appropriate
1202
      * Refresh issues for details and supplemental data view
1203 1 Andreas Kohlbecker
      * Exception when deleting a type specimen
1204 349 Andreas Müller
      * Excluded and excluded note notupdated in taxon node wizard
1205 347 Andreas Müller
      * Removing country not possible in specimen editors
1206
      * Dirty flag handling when deleting a synonym in name editor
1207
      * Term could be opened multiple times for same term type, now they are singletons
1208 1 Andreas Kohlbecker
      * Remove old data when again parsing a time period
1209 361 Andreas Kohlbecker
1210 346 Andreas Müller
{{ref_issues(-q:Release5.0 , id, subject, status)}}
1211 343 Andreas Müller
 
1212 346 Andreas Müller
* **Browser Editor (Vaadin)**
1213 1 Andreas Kohlbecker
1214 349 Andreas Müller
 * Many improvements in name registration editor
1215 1 Andreas Kohlbecker
 * Help for distribution editor
1216 344 Andreas Müller
 * Sorting of areas in area selection dialog
1217
1218
 {{ref_issues(-q:Release5.0 , id, subject, status)}}
1219
1220 343 Andreas Müller
1221 1 Andreas Kohlbecker
1222 302 Andreas Müller
1223 1 Andreas Kohlbecker
1224
## Previous Releases Archive
1225
1226
1227
see [[CdmPlatformRoadmapArchive]]