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1
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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2
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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3
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<modelVersion>4.0.0</modelVersion>
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4
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<groupId>org.cybertaxonomy</groupId>
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5
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<artifactId>utis-core</artifactId>
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<packaging>jar</packaging>
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<version>1.2.2</version>
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<name>UTIS-Core</name>
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9
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<description>Unified Taxonomic Information Service core libraries</description>
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<url>http://maven.apache.org</url>
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<repositories>
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<repository>
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<id>gbif-all</id>
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<url>http://repository.gbif.org/content/groups/gbif</url>
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</repository>
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<repository>
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<id>onejar-maven-plugin.googlecode.com</id>
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<url>http://onejar-maven-plugin.googlecode.com/svn/mavenrepo</url>
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</repository>
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<repository>
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<id>EditRepository</id>
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<url>http://dev.e-taxonomy.eu/mavenrepo/</url>
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</repository>
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24
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<!-- codehaus mule repository needed for yourkit -->
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<repository>
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<id>CodehausMuleRepository</id>
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<url>http://dist.codehaus.org/mule/dependencies/maven2/</url>
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</repository>
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</repositories>
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<properties>
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<swagger-annotations.version>1.5.10</swagger-annotations.version>
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<jackson-annotations.version>2.2.3</jackson-annotations.version>
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<!--
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NOTE: there is a tinkerpop version (2.7.1)
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from https://github.com/allenai/blueprints which is much older!!
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37
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the original tinkerpop is more recent
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-->
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<tinkerpop.version>2.6.0</tinkerpop.version>
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<sesame.version>2.7.10</sesame.version><!-- should match the version as used in tinkerpop.blueprints -->
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<neo4j.version>2.0.4</neo4j.version>
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</properties>
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<dependencies>
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<!--
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<dependency>
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<groupId>com.google.inject</groupId>
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48
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<artifactId>guice</artifactId>
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49
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<version>4.0</version>
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</dependency>
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51
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-->
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<dependency>
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<groupId>net.sf.opencsv</groupId>
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54
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<artifactId>opencsv</artifactId>
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55
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<version>2.3</version>
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56
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</dependency>
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57
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<dependency>
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58
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<groupId>com.fasterxml.jackson.module</groupId>
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59
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<artifactId>jackson-module-jaxb-annotations</artifactId>
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60
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<version>2.0.5</version>
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61
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</dependency>
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62
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<dependency>
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63
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<groupId>com.fasterxml.jackson.core</groupId>
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64
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<artifactId>jackson-annotations</artifactId>
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65
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<version>${jackson-annotations.version}</version>
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</dependency>
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<dependency>
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68
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<groupId>io.swagger</groupId>
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<artifactId>swagger-annotations</artifactId>
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<version>${swagger-annotations.version}</version>
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</dependency>
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<dependency>
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<groupId>org.gbif</groupId>
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74
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<artifactId>name-parser</artifactId>
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75
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<version>2.1</version>
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76
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</dependency>
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<dependency>
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78
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<groupId>junit</groupId>
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79
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<artifactId>junit</artifactId>
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80
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<version>4.11</version>
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81
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</dependency>
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82
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<dependency>
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83
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<groupId>org.slf4j</groupId>
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84
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<artifactId>slf4j-log4j12</artifactId>
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85
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<version>1.7.21</version>
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86
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</dependency>
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87
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<dependency>
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88
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<groupId>com.googlecode.json-simple</groupId>
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89
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<artifactId>json-simple</artifactId>
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90
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<version>1.1.1</version>
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91
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</dependency>
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92
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<dependency>
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93
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<groupId>javax.xml.bind</groupId>
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94
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<artifactId>jaxb-api</artifactId>
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95
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<version>2.2.5</version>
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96
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</dependency>
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<dependency>
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98
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<groupId>com.sun.xml.bind</groupId>
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99
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<artifactId>jaxb-impl</artifactId>
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100
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<version>2.2.5</version>
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</dependency>
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<dependency>
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103
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<groupId>axis</groupId>
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104
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<artifactId>axis</artifactId>
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105
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<version>1.4</version>
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106
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</dependency>
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<dependency>
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108
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<groupId>commons-discovery</groupId>
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109
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<artifactId>commons-discovery</artifactId>
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110
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<version>0.5</version>
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111
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</dependency>
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112
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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114
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<artifactId>httpmime</artifactId>
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115
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<version>4.3.2</version>
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116
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</dependency>
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<dependency>
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118
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<groupId>org.apache.httpcomponents</groupId>
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119
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<artifactId>httpclient</artifactId>
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120
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<version>4.3.2</version>
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121
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</dependency>
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122
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<!-- ======================================================================= -->
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123
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<!-- Dependencies needed for Apache Axix WSDL2Java (only during development) -->
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124
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<!--
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125
|
-->
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126
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<dependency>
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127
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<groupId>javax.xml</groupId>
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128
|
<artifactId>jaxrpc-api</artifactId>
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129
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<version>1.1</version>
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130
|
</dependency>
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131
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<dependency>
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132
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<groupId>javax.xml.soap</groupId>
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133
|
<artifactId>saaj-api</artifactId>
|
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134
|
<version>1.3.5</version>
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135
|
</dependency>
|
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136
|
<dependency>
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137
|
<groupId>wsdl4j</groupId>
|
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138
|
<artifactId>wsdl4j</artifactId>
|
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139
|
<version>1.6.3</version>
|
|
140
|
</dependency>
|
|
141
|
<dependency>
|
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142
|
<groupId>org.apache.geronimo.specs</groupId>
|
|
143
|
<artifactId>geronimo-activation_1.1_spec</artifactId>
|
|
144
|
<version>1.1</version>
|
|
145
|
</dependency>
|
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146
|
<!-- ======================================================================= -->
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147
|
<dependency>
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148
|
<groupId>javax.mail</groupId>
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|
149
|
<artifactId>mail</artifactId>
|
|
150
|
<version>1.4.7</version>
|
|
151
|
</dependency>
|
|
152
|
<dependency>
|
|
153
|
<groupId>com.tinkerpop.blueprints</groupId>
|
|
154
|
<artifactId>blueprints-neo4j2-graph</artifactId>
|
|
155
|
<version>${tinkerpop.version}</version>
|
|
156
|
</dependency>
|
|
157
|
<dependency>
|
|
158
|
<groupId>com.tinkerpop.blueprints</groupId>
|
|
159
|
<artifactId>blueprints-graph-sail</artifactId>
|
|
160
|
<version>${tinkerpop.version}</version>
|
|
161
|
</dependency>
|
|
162
|
<dependency>
|
|
163
|
<groupId>com.tinkerpop.gremlin</groupId>
|
|
164
|
<artifactId>gremlin-java</artifactId>
|
|
165
|
<version>${tinkerpop.version}</version>
|
|
166
|
</dependency>
|
|
167
|
<dependency>
|
|
168
|
<groupId>org.openrdf.sesame</groupId>
|
|
169
|
<artifactId>sesame-rio-rdfxml</artifactId>
|
|
170
|
<version>${sesame.version}</version>
|
|
171
|
</dependency>
|
|
172
|
<dependency>
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173
|
<groupId>org.openrdf.sesame</groupId>
|
|
174
|
<artifactId>sesame-repository-sail</artifactId>
|
|
175
|
<version>${sesame.version}</version>
|
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176
|
</dependency>
|
|
177
|
<dependency>
|
|
178
|
<groupId>org.neo4j</groupId>
|
|
179
|
<artifactId>neo4j</artifactId>
|
|
180
|
<version>${neo4j.version}</version>
|
|
181
|
</dependency>
|
|
182
|
<dependency>
|
|
183
|
<groupId>org.neo4j</groupId>
|
|
184
|
<artifactId>neo4j-ha</artifactId>
|
|
185
|
<version>${neo4j.version}</version>
|
|
186
|
<exclusions>
|
|
187
|
<exclusion>
|
|
188
|
<groupId>ch.qos.logback</groupId>
|
|
189
|
<artifactId>logback-classic</artifactId>
|
|
190
|
</exclusion>
|
|
191
|
</exclusions>
|
|
192
|
</dependency>
|
|
193
|
<!-- yourkit profiler api controller -->
|
|
194
|
<!-- the 2015 version is not available via maven
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|
195
|
<dependency>
|
|
196
|
<groupId>com.yourkit</groupId>
|
|
197
|
<artifactId>yjp-controller-api-redist</artifactId>
|
|
198
|
<version>9.0.8</version>
|
|
199
|
<!- - <version>10.0.6</version> TODO find repo or put into our own - ->
|
|
200
|
<scope>test</scope>
|
|
201
|
</dependency>
|
|
202
|
-->
|
|
203
|
</dependencies>
|
|
204
|
|
|
205
|
<!-- === THIS IS ONLY NEEDED FOR DEPLOYMENT TO TAVERNA === <pluginRepositories>
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|
206
|
<pluginRepository> <id>onejar-maven-plugin.googlecode.com</id> <url>http://onejar-maven-plugin.googlecode.com/svn/mavenrepo</url>
|
|
207
|
</pluginRepository> </pluginRepositories> -->
|
|
208
|
|
|
209
|
<build>
|
|
210
|
<resources>
|
|
211
|
<!-- ${basedir}/src/main/resources -->
|
|
212
|
<resource>
|
|
213
|
<!-- replace the project-version placeholder in the version.properties
|
|
214
|
file. This property can then be used to retrieve the version number in the
|
|
215
|
Bootloader -->
|
|
216
|
<targetPath>${project.build.directory}/classes</targetPath>
|
|
217
|
<filtering>true</filtering>
|
|
218
|
<directory>${basedir}/src/main/resources</directory>
|
|
219
|
<includes>
|
|
220
|
<include>version.properties</include>
|
|
221
|
</includes>
|
|
222
|
</resource>
|
|
223
|
<resource>
|
|
224
|
<!-- all other files in classes -->
|
|
225
|
<targetPath>${project.build.directory}/classes</targetPath>
|
|
226
|
<directory>${basedir}/src/main/resources</directory>
|
|
227
|
<excludes>
|
|
228
|
<exclude>version.properties</exclude>
|
|
229
|
</excludes>
|
|
230
|
</resource>
|
|
231
|
</resources>
|
|
232
|
<extensions>
|
|
233
|
<extension>
|
|
234
|
<groupId>org.apache.maven.wagon</groupId>
|
|
235
|
<artifactId>wagon-scm</artifactId>
|
|
236
|
<version>1.0-beta-6</version>
|
|
237
|
</extension>
|
|
238
|
<extension>
|
|
239
|
<groupId>org.apache.maven.wagon</groupId>
|
|
240
|
<artifactId>wagon-ssh</artifactId>
|
|
241
|
<version>1.0-beta-6</version>
|
|
242
|
</extension>
|
|
243
|
<extension>
|
|
244
|
<groupId>org.apache.maven.wagon</groupId>
|
|
245
|
<artifactId>wagon-ssh-external</artifactId>
|
|
246
|
<version>1.0-beta-6</version>
|
|
247
|
</extension>
|
|
248
|
<extension>
|
|
249
|
<groupId>org.apache.maven.scm</groupId>
|
|
250
|
<artifactId>maven-scm-manager-plexus</artifactId>
|
|
251
|
<version>1.0</version>
|
|
252
|
</extension>
|
|
253
|
<extension>
|
|
254
|
<groupId>org.apache.maven.scm</groupId>
|
|
255
|
<artifactId>maven-scm-provider-svnexe</artifactId>
|
|
256
|
<version>1.0</version>
|
|
257
|
</extension>
|
|
258
|
<!-- WebDAV plugin to upload snapshots -->
|
|
259
|
<extension>
|
|
260
|
<groupId>org.apache.maven.wagon</groupId>
|
|
261
|
<artifactId>wagon-webdav</artifactId>
|
|
262
|
<version>1.0-beta-2</version>
|
|
263
|
</extension>
|
|
264
|
</extensions>
|
|
265
|
<pluginManagement>
|
|
266
|
<plugins>
|
|
267
|
<plugin>
|
|
268
|
<groupId>org.apache.maven.plugins</groupId>
|
|
269
|
<artifactId>maven-jar-plugin</artifactId>
|
|
270
|
<version>2.4</version>
|
|
271
|
</plugin>
|
|
272
|
|
|
273
|
<plugin>
|
|
274
|
<groupId>org.apache.maven.plugins</groupId>
|
|
275
|
<artifactId>maven-release-plugin</artifactId>
|
|
276
|
<version>2.4.2</version>
|
|
277
|
</plugin>
|
|
278
|
</plugins>
|
|
279
|
</pluginManagement>
|
|
280
|
<plugins>
|
|
281
|
<!-- === THIS IS ONLY NEEDED FOR DEPLOYMENT TO TAVERNA ===
|
|
282
|
<plugin>
|
|
283
|
<groupId>org.apache.maven.plugins</groupId>
|
|
284
|
<artifactId>maven-shade-plugin</artifactId>
|
|
285
|
<executions>
|
|
286
|
<execution>
|
|
287
|
<phase>package</phase>
|
|
288
|
<goals>
|
|
289
|
<goal>shade</goal>
|
|
290
|
</goals>
|
|
291
|
</execution>
|
|
292
|
</executions>
|
|
293
|
<configuration>
|
|
294
|
<finalName>${project.artifactId}-${project.version}</finalName>
|
|
295
|
</configuration>
|
|
296
|
</plugin>
|
|
297
|
-->
|
|
298
|
<plugin>
|
|
299
|
<groupId>org.jvnet.jaxb2.maven2</groupId>
|
|
300
|
<artifactId>maven-jaxb2-plugin</artifactId>
|
|
301
|
<version>0.11.0</version>
|
|
302
|
<executions>
|
|
303
|
<execution>
|
|
304
|
<!-- Generates Java sources from XML Schema(s) and binding file(s)
|
|
305
|
using the JAXB Binding Compiler (XJC) -->
|
|
306
|
<!--
|
|
307
|
setting the phase to pre-clean we effectively disable this
|
|
308
|
execution since a site is not generated for this project.
|
|
309
|
Thus the jaxb2 plugin must be executed explicitely by:
|
|
310
|
mvn jaxb2:generate
|
|
311
|
-->
|
|
312
|
<phase>post-site</phase>
|
|
313
|
<goals>
|
|
314
|
<goal>generate</goal>
|
|
315
|
</goals>
|
|
316
|
</execution>
|
|
317
|
</executions>
|
|
318
|
<configuration>
|
|
319
|
<schemaDirectory>src/main/resources/org/cybertaxonomy/utis/tnr</schemaDirectory>
|
|
320
|
<generateDirectory>src/main/java</generateDirectory>
|
|
321
|
<!-- removeOldOutput>false</removeOldOutput> -->
|
|
322
|
<cleanPackageDirectories>true</cleanPackageDirectories>
|
|
323
|
<extension>true</extension>
|
|
324
|
<args>
|
|
325
|
<arg>-Xannotate</arg>
|
|
326
|
</args>
|
|
327
|
<clearOutputDir>true</clearOutputDir>
|
|
328
|
<plugins>
|
|
329
|
<plugin>
|
|
330
|
<groupId>org.jvnet.jaxb2_commons</groupId>
|
|
331
|
<artifactId>jaxb2-basics-annotate</artifactId>
|
|
332
|
<version>1.0.1</version>
|
|
333
|
</plugin>
|
|
334
|
</plugins>
|
|
335
|
</configuration>
|
|
336
|
<dependencies>
|
|
337
|
<dependency>
|
|
338
|
<groupId>com.fasterxml.jackson.core</groupId>
|
|
339
|
<artifactId>jackson-annotations</artifactId>
|
|
340
|
<version>${jackson-annotations.version}</version>
|
|
341
|
</dependency>
|
|
342
|
<dependency>
|
|
343
|
<groupId>io.swagger</groupId>
|
|
344
|
<artifactId>swagger-annotations</artifactId>
|
|
345
|
<version>${swagger-annotations.version}</version>
|
|
346
|
</dependency>
|
|
347
|
</dependencies>
|
|
348
|
</plugin>
|
|
349
|
<plugin>
|
|
350
|
<groupId>org.codehaus.mojo</groupId>
|
|
351
|
<artifactId>build-helper-maven-plugin</artifactId>
|
|
352
|
<version>1.9.1</version>
|
|
353
|
<executions>
|
|
354
|
<execution>
|
|
355
|
<id>add-source</id>
|
|
356
|
<phase>generate-sources</phase>
|
|
357
|
<goals>
|
|
358
|
<goal>add-source</goal>
|
|
359
|
</goals>
|
|
360
|
<configuration>
|
|
361
|
<sources>
|
|
362
|
<source>src/main/generated</source>
|
|
363
|
</sources>
|
|
364
|
</configuration>
|
|
365
|
</execution>
|
|
366
|
</executions>
|
|
367
|
</plugin>
|
|
368
|
<plugin>
|
|
369
|
<groupId>org.apache.maven.plugins</groupId>
|
|
370
|
<artifactId>maven-compiler-plugin</artifactId>
|
|
371
|
<version>3.1</version>
|
|
372
|
<configuration>
|
|
373
|
<source>1.7</source>
|
|
374
|
<target>1.7</target>
|
|
375
|
</configuration>
|
|
376
|
</plugin>
|
|
377
|
<plugin>
|
|
378
|
<groupId>org.apache.maven.plugins</groupId>
|
|
379
|
<artifactId>maven-source-plugin</artifactId>
|
|
380
|
<version>2.4</version>
|
|
381
|
<executions>
|
|
382
|
<execution>
|
|
383
|
<id>attach-sources</id>
|
|
384
|
<goals>
|
|
385
|
<goal>jar</goal>
|
|
386
|
</goals>
|
|
387
|
</execution>
|
|
388
|
</executions>
|
|
389
|
</plugin>
|
|
390
|
|
|
391
|
</plugins>
|
|
392
|
</build>
|
|
393
|
<!-- The location of your plugin site -->
|
|
394
|
<distributionManagement>
|
|
395
|
<repository>
|
|
396
|
<id>wp5.e-taxonomy.eu</id>
|
|
397
|
<name>Edit Maven Repository</name>
|
|
398
|
<url>scpexe://wp5.e-taxonomy.eu/var/www/wp5.e-taxonomy.eu/mavenrepo/</url>
|
|
399
|
<layout>default</layout>
|
|
400
|
</repository>
|
|
401
|
</distributionManagement>
|
|
402
|
</project>
|