Revision def5cf3f
Added by Andreas Kohlbecker over 8 years ago
| src/main/java/org/bgbm/biovel/drf/checklist/EEA_BDC_Client.java | ||
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| 7 | 7 |
import java.util.Iterator; |
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import java.util.List; |
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import org.apache.jena.rdf.model.Model; |
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import org.apache.jena.rdf.model.Resource; |
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import org.apache.lucene.queryParser.QueryParser; |
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import org.bgbm.biovel.drf.client.ServiceProviderInfo; |
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import org.bgbm.biovel.drf.query.TinkerPopClient; |
| ... | ... | |
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TaxonName taxonName = new TaxonName(); |
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// TaxonName |
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taxonName.setFullName(queryClient.relatedVertexValue(v, RdfSchema.RDFS, "label")); |
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// TODO rename CanonicalName to scientificName? compare with dwc:scientificName |
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taxonName.setCanonicalName(queryClient.relatedVertexValue(v, RdfSchema.EUNIS_SPECIES, "binomialName")); |
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taxonName.setRank(queryClient.relatedVertexValue(v, RdfSchema.EUNIS_SPECIES, "taxonomicRank")); |
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return taxonName; |
| ... | ... | |
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} |
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/** |
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* Returns all subjects that are related to the taxonR |
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* via the es:eunisPrimaryName property. |
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* |
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* @param taxonR |
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* @return |
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*/ |
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private List<Resource> queryForSynonyms(Resource taxonR) {
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/* FIXME |
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List<Resource> synonymRList = null; |
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try {
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StringBuilder queryString = prepareQueryString(); |
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queryString.append("DESCRIBE ?synonym es:eunisPrimaryName <" + taxonR.getURI() + ">");
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logger.debug("\n" + queryString.toString());
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Model model = queryClient.describe(queryString.toString()); |
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synonymRList = listSynonymResources(model, taxonR); |
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} catch (DRFChecklistException e) {
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logger.error("SPARQL query error in queryForSynonyms()", e);
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} finally {
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if(synonymRList == null) {
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synonymRList = new ArrayList<Resource>(0); |
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} |
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} |
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return synonymRList; |
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*/ return null; |
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} |
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/** |
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* @param model |
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* @return |
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*/ |
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private List<Resource> listSynonymResources(Model model, Resource taxonR) {
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List<Resource> synonymRList; |
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/* |
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Property filterProperty = model.createProperty(RdfSchema.EUNIS_SPECIES.schemaUri, "eunisPrimaryName"); |
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synonymRList = queryClient.listResources(model, filterProperty, null, taxonR); |
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return synonymRList; |
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*/ |
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return null; |
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} |
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@Override |
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public void resolveScientificNamesExact(TnrMsg tnrMsg) throws DRFChecklistException {
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List<Query> queryList = tnrMsg.getQuery(); |
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// selecting one request as representative, only |
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// the search mode and addSynonmy flag are important |
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// for the further usage of the request object |
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for (ServiceProviderInfo checklistInfo : getServiceProviderInfo().getSubChecklists()) {
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// FIXME query specific subchecklist |
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// selecting one request as representative, only |
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// the search mode and addSynonmy flag are important |
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// for the further usage of the request object |
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Query query = singleQueryFrom(tnrMsg); |
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String queryString = query.getRequest().getQueryString(); |
| ... | ... | |
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for (ServiceProviderInfo checklistInfo : getServiceProviderInfo().getSubChecklists()) {
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// FIXME query specific subchecklist |
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// selecting one request as representative, only |
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// the search mode and addSynonmy flag are important |
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// for the further usage of the request object |
| ... | ... | |
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* @param matchNode |
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* @return |
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*/ |
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@SuppressWarnings("unused")
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private Response tnrResponseFromResource(Vertex taxonV, Request request, Vertex matchNode, NameType matchType) {
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Response tnrResponse = TnrMsgUtils.tnrResponseFor(getServiceProviderInfo()); |
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SearchMode searchMode = SearchMode.valueOf(request.getSearchMode()); |
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GremlinPipeline<Graph, Vertex> pipe = new GremlinPipeline<Graph, Vertex>(taxonV); |
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String validName = queryClient.relatedVertexValue(taxonV, RdfSchema.EUNIS_SPECIES, "validName"); |
Also available in: Unified diff
further cleaning up