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package org.cybertaxonomy.utis.checklist;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertTrue;
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import org.cybertaxonomy.utis.tnr.msg.Classification;
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import org.cybertaxonomy.utis.tnr.msg.NameType;
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import org.cybertaxonomy.utis.tnr.msg.Response;
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import org.cybertaxonomy.utis.tnr.msg.Synonym;
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import org.cybertaxonomy.utis.tnr.msg.TnrMsg;
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import org.cybertaxonomy.utis.utils.TnrMsgException;
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import org.cybertaxonomy.utis.utils.TnrMsgUtils;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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public class EEA_BDC_ClientTest {
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protected static final Logger logger = LoggerFactory.getLogger(EEA_BDC_ClientTest.class);
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static EEA_BDC_Client client;
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@BeforeClass
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public static void setup() {
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client = new EEA_BDC_Client();
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client.setChecklistInfo(client.buildServiceProviderInfo());
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}
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@Test
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public void scientificNameExact_Synonym_Test() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameExact, "Canis dalmatinus", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertEquals(1, tnrMsg.getQuery().get(0).getResponse().size());
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Response response = tnrMsg.getQuery().get(0).getResponse().get(0);
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assertEquals("Canis dalmatinus", response.getMatchingNameString());
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assertEquals("Canis aureus", response.getTaxon().getTaxonName().getCanonicalName());
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assertTrue(response.getTaxon().getSources().size() > 0);
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assertEquals(0, response.getSynonym().size());
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}
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@Test
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public void scientificNameExact_Accepted_Test() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameExact, "Canis aureus", true);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertEquals(1, tnrMsg.getQuery().get(0).getResponse().size());
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Response response = tnrMsg.getQuery().get(0).getResponse().get(0);
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assertEquals("Canis aureus", response.getMatchingNameString());
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assertEquals("Canis aureus", response.getTaxon().getTaxonName().getCanonicalName());
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logger.info("Accepted: " + response.getTaxon().getTaxonName().getFullName() + " (" + response.getTaxon().getUrl() + ")");
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assertTrue(response.getSynonym().size() > 0);
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for(Synonym syn : response.getSynonym()) {
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logger.info("Synonym: " + syn.getTaxonName().getFullName() + " (" + syn.getUrl() + ")");
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}
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Classification c = response.getTaxon().getClassification();
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assertEquals("Canidae", c.getFamily());
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assertEquals("Carnivora", c.getOrder());
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assertEquals("Chordata", c.getPhylum());
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assertEquals("Animalia", c.getKingdom());
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}
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@Test
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public void scientificNameExact_withSynonym_Test() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameExact, "Prinobius myardi", true);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertEquals(1, tnrMsg.getQuery().get(0).getResponse().size());
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Response response = tnrMsg.getQuery().get(0).getResponse().get(0);
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assertEquals("Prinobius myardi", response.getMatchingNameString());
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assertEquals("Prinobius myardi", response.getTaxon().getTaxonName().getCanonicalName());
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assertTrue(response.getSynonym().size() > 0);
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boolean prionus_germari_found = false;
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for(Synonym syn : response.getSynonym()) {
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logger.info(syn.getTaxonName().getFullName());
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if(syn.getTaxonName().getCanonicalName().equals("Prionus germari")) {
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prionus_germari_found = true;
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}
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}
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assertTrue(prionus_germari_found);
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Classification c = response.getTaxon().getClassification();
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}
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@Test
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public void genus_Test() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameExact, "Prionus", true);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertEquals(8, tnrMsg.getQuery().get(0).getResponse().size());
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Response response = tnrMsg.getQuery().get(0).getResponse().get(0);
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assertTrue(response.getMatchingNameString().startsWith("Prionus"));
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assertTrue(
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(response.getTaxon().getTaxonName().getCanonicalName().startsWith("Prionus") && response.getMatchingNameType().equals(NameType.TAXON))
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||
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(response.getTaxon().getTaxonName().getCanonicalName().startsWith("Prinobius") && response.getMatchingNameType().equals(NameType.SYNONYM))
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);
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Classification c = response.getTaxon().getClassification();
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assertEquals("Cerambycidae", c.getFamily());
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assertEquals("Coleoptera", c.getOrder());
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assertEquals("Arthropoda", c.getPhylum());
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assertEquals("Animalia", c.getKingdom());
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}
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@Test
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public void scientificNameLikeTest_1() throws DRFChecklistException, TnrMsgException {
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String queryString = "Cani";
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameLike, queryString, false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue(tnrMsg.getQuery().get(0).getResponse().size() > 1);
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for(Response r : tnrMsg.getQuery().get(0).getResponse()) {
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assertTrue(r.getMatchingNameString().startsWith(queryString));
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}
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}
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@Test
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public void scientificNameLikeTest_2() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameLike, "Abies par", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue(tnrMsg.getQuery().get(0).getResponse().size() == 1);
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}
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@Test
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public void scientificNameLikeTest_3() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.scientificNameLike, "ies par", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue("The query string should not match anything in the middle of the name.", tnrMsg.getQuery().get(0).getResponse().size() == 0);
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}
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@Test
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public void vernacularNameExactTest_1() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.vernacularNameExact, "Farkas", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue(tnrMsg.getQuery().get(0).getResponse().size() == 1);
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tnrMsg.getQuery().get(0).getResponse().get(0).getTaxon().getTaxonName().getCanonicalName().equals("Canis lupus");
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}
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@Test
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public void vernacularNameLikeTest_1() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.vernacularNameLike, "egwart", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue(tnrMsg.getQuery().get(0).getResponse().size() > 0);
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Response response = tnrMsg.getQuery().get(0).getResponse().get(0);
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assertEquals("Cichorium intybus", response.getTaxon().getTaxonName().getCanonicalName());
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assertEquals("Wegwarte", response.getMatchingNameString());
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assertEquals(NameType.VERNACULAR_NAME, response.getMatchingNameType());
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}
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@Test
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public void findByIdentifierTest_1() throws DRFChecklistException, TnrMsgException {
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TnrMsg tnrMsg = TnrMsgUtils.createRequest(SearchMode.findByIdentifier, "http://eunis.eea.europa.eu/species/1367", false);
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client.queryChecklist(tnrMsg);
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String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);
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System.out.println(outputXML);
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assertTrue(tnrMsg.getQuery().get(0).getResponse().size() == 1);
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tnrMsg.getQuery().get(0).getResponse().get(0).getTaxon().getTaxonName().getCanonicalName().equals("Canis lupus");
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}
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}
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