Revision deeccd97
Added by Andreas Kohlbecker over 8 years ago
| src/main/java/org/cybertaxonomy/utis/checklist/EEA_BDC_Client.java | ||
|---|---|---|
| 303 | 303 |
.toList(); |
| 304 | 304 |
for(Vertex tv : titleVs) {
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| 305 | 305 |
Source source = new Source(); |
| 306 |
logger.error(tv.toString());
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logger.debug(tv.toString());
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| 307 | 307 |
source.setName(tv.getProperty(GraphSail.VALUE).toString()); |
| 308 | 308 |
taxonBase.getSources().add(source); |
| 309 | 309 |
} |
| ... | ... | |
| 337 | 337 |
.inE(RdfSchema.EUNIS_SPECIES.property("eunisPrimaryName")).outV().dedup()
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| 338 | 338 |
.toList(); |
| 339 | 339 |
for(Vertex synonymV : synonymVs) {
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String typeUri = queryClient.relatedVertexValue(synonymV, RdfSchema.RDF, "type");
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String status = null;
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try {
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status = URI.create(typeUri).getFragment();
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} catch (Exception e) {
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// http://www.w3.org/1999/02/22-rdf-syntax-ns#type is used inconsistently, accepted taxa can have type SpeciesSynonym
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// and are their own synonym in this case !
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// using http://eunis.eea.europa.eu/rdf/species-schema.rdf#taxonomicRank is the recommended way to detect synonyms and to avoid
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// adding the accepted taxon as its own synonym
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String taxonomicRank = queryClient.relatedVertexValue(synonymV, RdfSchema.EUNIS_SPECIES, "taxonomicRank");
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| 345 | 345 |
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} |
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| 347 | 346 |
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if (status != null && status.equals("SpeciesSynonym")) {
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if (taxonomicRank != null && taxonomicRank.equals("Synonym")) {
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| 349 | 348 |
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| 350 | 349 |
Synonym synonym = new Synonym(); |
| 351 | 350 |
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| 352 | 351 |
TaxonName taxonName = createTaxonName(synonymV); |
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synonym.setTaxonomicStatus(status); |
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synonym.setTaxonomicStatus(taxonomicRank); |
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synonym.setUrl(synonymV.getProperty(GraphSail.VALUE).toString()); |
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| 354 | 354 |
synonym.setTaxonName(taxonName); |
| 355 | 355 |
synonym.setAccordingTo(queryClient.relatedVertexValue(synonymV, RdfSchema.DWC, "nameAccordingToID")); |
| 356 | 356 |
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Also available in: Unified diff
better detection of synonyms to avoid adding the accepted taxon as its own synonym