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package org.bgbm.biovel.drf.tnr.msg;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import java.util.logging.Level;

import java.util.logging.Logger;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.PESIClient;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.checklist.Species2000ColClient;

import org.bgbm.biovel.drf.checklist.WoRMSClient;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class WoRMSClientTest {

    private static final Logger logger = Logger.getLogger(WoRMSClientTest.class.getName());

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        logger.setLevel(Level.INFO);

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(WoRMSClient.ID,

                WoRMSClient.LABEL,

                WoRMSClient.URL,

                WoRMSClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        logger.info("ChecklistInfo : " +  checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        WoRMSClient wormsc =  new WoRMSClient();

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            logger.info("Querying WoRMS for name : " + tnrMsg.getQuery().get(0).getRequest().getQueryString());

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            wormsc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            logger.info(outputXML);

        }

    }

    @Test

    public void resolveScientificNamesLikeTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        WoRMSClient wormsc =  new WoRMSClient();

        // strip off the last to characters of the names since we will do a like query

        for (TnrMsg tnrMsg : tnrMsgs) {

            String name = tnrMsg.getQuery().get(0).getRequest().getQueryString();

            tnrMsg.getQuery().get(0).getRequest().setSearchMode(SearchMode.scientificNameExact.toString());

            String nameTrunk = name.substring(0, name.length() - 2);

            logger.info("Querying WoRMS for name : " + nameTrunk);

            tnrMsg.getQuery().get(0).getRequest().setQueryString(nameTrunk);

            wormsc.resolveScientificNamesLike(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            logger.info(outputXML);

        }

    }

}