EDIT

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.List;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.BgbmEditClient;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.Query;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class BgbmEditChecklistTest {

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(BgbmEditClient.ID,

                BgbmEditClient.LABEL,

                BgbmEditClient.DOC_URL,

                BgbmEditClient.COPYRIGHT_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

        ci.addSubChecklist(new ServiceProviderInfo("col",

                "EDIT - Catalogue Of Life",

                "http://wp5.e-taxonomy.eu/cdmlib/rest-api-name-catalogue.html",

                "http://www.catalogueoflife.org/col/info/copyright", ServiceProviderInfo.DEFAULT_SEARCH_MODE));

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/vibrant.csv","UTF-8"));

        //List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        TnrMsg tnrMsg = TnrMsgUtils.mergeTnrMsgs(tnrMsgs);

        String json = JSONUtils.convertObjectToJson(ci);

        BgbmEditClient bec = new BgbmEditClient(json);

        for(Query query : tnrMsg.getQuery()) {

            query.getRequest().setSearchMode(SearchMode.scientificNameExact.toString());

        }

        TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

        bec.queryChecklist(tnrMsg);

        String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

        System.out.println(outputXML);

    }

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.utils.ServiceProviderInfoUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class ChecklistTest {

	@BeforeClass 

	public static void  setup() {

	}

	@Test

	public void generateChecklistInfoList() throws DRFChecklistException {

		String checklistInfoListJson = ServiceProviderInfoUtils.generateChecklistInfoListAsJson();

		System.out.println("Json : " + checklistInfoListJson);

	}

	@Test

	public void generateChecklistInfoListFromStringArray() throws DRFChecklistException {

		List<String> ciList = new ArrayList<String>();

		ciList.add("species2000col;species2000col;Species2000 - Catalogue Of Life;http://www.catalogueoflife.org;http://www.catalogueoflife.org/col/info/copyright");

		ciList.add("edit;col;EDIT - Catalogue Of Life;http://wp5.e-taxonomy.eu/cdmlib/rest-api-name-catalogue.html;http://www.catalogueoflife.org/col/info/copyright");

		ciList.add("gbif;1028;Afromoths, online datbase of Afrotropical moth species (Lepidoptera);http://ecat-dev.gbif.org/checklist/1028;");

		ciList.add("gbif;1000;Afromoths, online datbase of Afrotropical moth species (Lepidoptera);http://ecat-dev.gbif.org/checklist/1000;");

		List<ServiceProviderInfo> ciInfoList = ServiceProviderInfoUtils.convertStringToChecklistInfo(ciList);

		Iterator<ServiceProviderInfo> ciInfoItr = ciInfoList.iterator();

		while(ciInfoItr.hasNext()) {

			System.out.println(JSONUtils.convertObjectToJson(ciInfoItr.next()));

		}

	}

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.GBIFBetaBackboneClient;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Ignore;

import org.junit.Test;

@Ignore

public class GBIFBetaChecklistTest {

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(GBIFBetaBackboneClient.ID,

                GBIFBetaBackboneClient.LABEL,

                GBIFBetaBackboneClient.URL,

                GBIFBetaBackboneClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

        ci.addSubChecklist(new ServiceProviderInfo("1", "GBIF NUB Taxonomy", "http://ecat-dev.gbif.org/checklist/1"));

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        //List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/singleNameCompleteOnly.csv","UTF-8"));

        GBIFBetaBackboneClient gbbc =  new GBIFBetaBackboneClient(JSONUtils.convertObjectToJson(ci));

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            gbbc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            System.out.println(outputXML);

        }

    }

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.GBIFBackboneClient;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

//@Ignore

public class GBIFChecklistTest {

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardiella ligerica");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(GBIFBackboneClient.ID,

                GBIFBackboneClient.LABEL,

                GBIFBackboneClient.URL,

                GBIFBackboneClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

        ci.addSubChecklist(new ServiceProviderInfo("d7dddbf4-2cf0-4f39-9b2a-bb099caae36c", "GBIF NUB Taxonomy", "http://uat.gbif.org/dataset/d7dddbf4-2cf0-4f39-9b2a-bb099caae36c"));

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void buildServiceProviderInfo() throws DRFChecklistException {

        GBIFBackboneClient gbc =  new GBIFBackboneClient();

        ServiceProviderInfo spiInfo = gbc.buildServiceProviderInfo();

        List<ServiceProviderInfo> spiList = spiInfo.getSubChecklists();

        Iterator<ServiceProviderInfo> spiItr = spiList.iterator();

        while(spiItr.hasNext()) {

            ServiceProviderInfo spi = spiItr.next();

            System.out.println("Dataset : " + spi.getLabel() );

        }

        String checklistInfoJson = JSONUtils.convertObjectToJson(spiInfo);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void nameCompleteCsvTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        //List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/singleNameCompleteOnly.csv","UTF-8"));

        List<String> chosenKeyList = new ArrayList<String>();

        chosenKeyList.add("7ddf754f-d193-4cc9-b351-99906754a03b");

        GBIFBackboneClient gbc =  new GBIFBackboneClient(JSONUtils.convertObjectToJson(ci));

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            gbc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            System.out.println(outputXML);

        }

    }

    @Test

    public void nameCompleteStringListTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = TnrMsgUtils.convertStringListToTnrMsgList(nameCompleteList, SearchMode.scientificNameExact, false);

        //List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/singleNameCompleteOnly.csv","UTF-8"));

        List<String> chosenKeyList = new ArrayList<String>();

        chosenKeyList.add("7ddf754f-d193-4cc9-b351-99906754a03b");

        GBIFBackboneClient gbc =  new GBIFBackboneClient(JSONUtils.convertObjectToJson(ci));

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            gbc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            System.out.println(outputXML);

        }

    }

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.PESIClient;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.checklist.Species2000ColClient;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class PESIClientTest {

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(Species2000ColClient.ID,

                Species2000ColClient.LABEL,

                Species2000ColClient.URL,

                Species2000ColClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        //List<String> inputXMLList = parser.parseToXML(BiovelUtils.getCSVAsString("org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

//		List<String> chosenKeyList = new ArrayList<String>();

//		chosenKeyList.add("d7dddbf4-2cf0-4f39-9b2a-bb099caae36c");

        PESIClient pesic =  new PESIClient();

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            pesic.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            System.out.println(outputXML);

        }

    }

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.checklist.Species2000ColClient;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class Species2000ColClientTest {

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(Species2000ColClient.ID,

                Species2000ColClient.LABEL,

                Species2000ColClient.URL,

                Species2000ColClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        System.out.println("Json : " + checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        Species2000ColClient scc =  new Species2000ColClient();

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            scc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            System.out.println(outputXML);

        }

    }

}

package org.bgbm.biovel.drf.checklist;

import java.util.ArrayList;

import java.util.Iterator;

import java.util.List;

import java.util.logging.Level;

import java.util.logging.Logger;

import javax.xml.bind.JAXBException;

import org.bgbm.biovel.drf.checklist.DRFChecklistException;

import org.bgbm.biovel.drf.checklist.PESIClient;

import org.bgbm.biovel.drf.checklist.SearchMode;

import org.bgbm.biovel.drf.checklist.Species2000ColClient;

import org.bgbm.biovel.drf.checklist.WoRMSClient;

import org.bgbm.biovel.drf.client.ServiceProviderInfo;

import org.bgbm.biovel.drf.input.DRFCSVInputParser;

import org.bgbm.biovel.drf.input.DRFInputException;

import org.bgbm.biovel.drf.tnr.msg.TnrMsg;

import org.bgbm.biovel.drf.utils.BiovelUtils;

import org.bgbm.biovel.drf.utils.JSONUtils;

import org.bgbm.biovel.drf.utils.TnrMsgException;

import org.bgbm.biovel.drf.utils.TnrMsgUtils;

import org.junit.BeforeClass;

import org.junit.Test;

public class WoRMSClientTest {

    private static final Logger logger = Logger.getLogger(WoRMSClientTest.class.getName());

    private static DRFCSVInputParser parser;

    private static List<String> nameCompleteList;

    private static ServiceProviderInfo ci;

    @BeforeClass

    public static void  setup() {

        logger.setLevel(Level.INFO);

        parser = new DRFCSVInputParser();

        nameCompleteList = new ArrayList<String>();

        nameCompleteList.add("Ameira divagans");

        nameCompleteList.add("Boccardi redeki");

        nameCompleteList.add("Bougainvillia rugosa");

        nameCompleteList.add("Branchiura sowerbyi");

        nameCompleteList.add("Cercopagis pengoi");

        nameCompleteList.add("Chelicorophium curvispinum");

        ci = new ServiceProviderInfo(WoRMSClient.ID,

                WoRMSClient.LABEL,

                WoRMSClient.URL,

                WoRMSClient.DATA_AGR_URL, ServiceProviderInfo.DEFAULT_SEARCH_MODE);

    }

    @Test

    public void convertChecklistInfoToJson() throws DRFChecklistException {

        String checklistInfoJson = JSONUtils.convertObjectToJson(ci);

        logger.info("ChecklistInfo : " +  checklistInfoJson);

    }

    @Test

    public void nameCompleteTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        WoRMSClient wormsc =  new WoRMSClient();

        Iterator<TnrMsg> tnrMsgItr = tnrMsgs.iterator();

        while(tnrMsgItr.hasNext()) {

            TnrMsg tnrMsg = tnrMsgItr.next();

            logger.info("Querying WoRMS for name : " + tnrMsg.getQuery().get(0).getRequest().getQueryString());

            TnrMsgUtils.updateWithSearchMode(tnrMsg, SearchMode.scientificNameExact);

            wormsc.queryChecklist(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            logger.info(outputXML);

        }

    }

    @Test

    public void resolveScientificNamesLikeTest() throws DRFChecklistException, DRFInputException, JAXBException, TnrMsgException {

        parser = new DRFCSVInputParser();

        List<TnrMsg> tnrMsgs = parser.parse(BiovelUtils.getResourceAsString("/org/bgbm/biovel/drf/tnr/nameCompleteOnly.csv","UTF-8"));

        WoRMSClient wormsc =  new WoRMSClient();

        // strip off the last to characters of the names since we will do a like query

        for (TnrMsg tnrMsg : tnrMsgs) {

            String name = tnrMsg.getQuery().get(0).getRequest().getQueryString();

            tnrMsg.getQuery().get(0).getRequest().setSearchMode(SearchMode.scientificNameExact.toString());

            String nameTrunk = name.substring(0, name.length() - 2);

            logger.info("Querying WoRMS for name : " + nameTrunk);

            tnrMsg.getQuery().get(0).getRequest().setQueryString(nameTrunk);

            wormsc.resolveScientificNamesLike(tnrMsg);

            String outputXML = TnrMsgUtils.convertTnrMsgToXML(tnrMsg);

            logger.info(outputXML);

        }

    }

}