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package org.cybertaxonomy.utis.tnr.msg;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.Iterator;
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import java.util.List;
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import javax.xml.bind.JAXBException;
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import javax.xml.parsers.ParserConfigurationException;
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import org.cybertaxonomy.utis.input.DRFCSVInputParser;
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import org.cybertaxonomy.utis.input.DRFInputException;
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import org.cybertaxonomy.utis.tnr.msg.Response;
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import org.cybertaxonomy.utis.tnr.msg.TnrMsg;
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import org.cybertaxonomy.utis.utils.BiovelUtils;
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import org.cybertaxonomy.utis.utils.TnrMsgUtils;
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import org.junit.Assert;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import org.w3c.dom.Node;
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import org.xml.sax.SAXException;
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public class TnrRequestTest {
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private static DRFCSVInputParser parser;
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private static List<String> nameCompleteList;
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@BeforeClass
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public static void setup() {
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parser = new DRFCSVInputParser();
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nameCompleteList = new ArrayList<String>();
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nameCompleteList.add("Abies pardei");
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nameCompleteList.add("Ameira divagans");
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nameCompleteList.add("Boccardiella ligerica");
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nameCompleteList.add("Bougainvillia rugosa");
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nameCompleteList.add("Branchiura sowerbyi");
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nameCompleteList.add("Cercopagis pengoi");
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nameCompleteList.add("Chelicorophium curvispinum");
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nameCompleteList.add("Chalcis biguttata");
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}
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@Test
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public void nameCompleteOnlyTest() {
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List<TnrMsg> tnrRequests = parser.parse(BiovelUtils.getResourceAsString("/org/cybertaxonomy/utis/tnr/nameCompleteOnly.csv","UTF-8"));
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Assert.assertEquals("Number of names compared not equal",tnrRequests.size(),nameCompleteList.size());
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Iterator<TnrMsg> itrTr = tnrRequests.iterator();
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Iterator<String> itrNc = nameCompleteList.iterator();
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while(itrTr.hasNext() && itrNc.hasNext()) {
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TnrMsg tnrMsg = itrTr.next();
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String sciName = tnrMsg.getQuery().get(0).getRequest().getQueryString();
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System.out.println("Scientific Name : " + sciName);
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Assert.assertEquals("nameComplete differs",sciName,itrNc.next());
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}
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}
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@Test
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public void nameCompleteOnlyDomTest() throws DRFInputException {
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List<Node> tnrRequestNodes = parser.parseToDomNodes(BiovelUtils.getResourceAsString("/org/cybertaxonomy/utis/tnr/nameCompleteOnly.csv","UTF-8"));
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}
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@Test
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public void nameCompleteOnlyJsonTest() throws DRFInputException {
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List<String> tnrRequestJsonList = parser.parseToJsonList(BiovelUtils.getResourceAsString("/org/cybertaxonomy/utis/tnr/nameCompleteOnly.csv","UTF-8"));
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}
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@Test
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public void tnrResponseTest() throws DRFInputException, JAXBException, ParserConfigurationException, SAXException, IOException {
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Response tnrResponse = TnrMsgUtils.convertXMLToTnrResponse(BiovelUtils.getResourceAsString("/org/cybertaxonomy/utis/tnr/TnrResponse.xml","UTF-8"));
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System.out.println("name canonical : " + tnrResponse.getTaxon().getTaxonName().getCanonicalName());
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}
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}
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