EDIT

package org.cybertaxonomy.utis.checklist;

import java.io.IOException;

import java.io.StringReader;

import java.io.StringWriter;

import java.io.Writer;

import java.net.URI;

import java.util.EnumSet;

import java.util.HashMap;

import java.util.Map;

import javax.xml.bind.JAXBException;

import javax.xml.parsers.DocumentBuilder;

import javax.xml.parsers.DocumentBuilderFactory;

import javax.xml.parsers.ParserConfigurationException;

import javax.xml.transform.Source;

import javax.xml.transform.Transformer;

import javax.xml.transform.TransformerException;

import javax.xml.transform.TransformerFactory;

import javax.xml.transform.stream.StreamResult;

import javax.xml.transform.stream.StreamSource;

import javax.xml.xpath.XPathConstants;

import javax.xml.xpath.XPathExpression;

import javax.xml.xpath.XPathExpressionException;

import javax.xml.xpath.XPathFactory;

import org.apache.http.HttpHost;

import org.cybertaxonomy.utis.client.ServiceProviderInfo;

import org.cybertaxonomy.utis.query.RestClient;

import org.cybertaxonomy.utis.tnr.msg.Query;

import org.cybertaxonomy.utis.tnr.msg.Response;

import org.cybertaxonomy.utis.tnr.msg.TnrMsg;

import org.cybertaxonomy.utis.utils.BiovelUtils;

import org.cybertaxonomy.utis.utils.IdentifierUtils;

import org.cybertaxonomy.utis.utils.TnrMsgUtils;

import org.w3c.dom.Document;

import org.w3c.dom.Node;

import org.xml.sax.InputSource;

import org.xml.sax.SAXException;

public class Species2000ColClient extends BaseChecklistClient<RestClient> {

    /**

     *

     */

    private static final HttpHost HTTP_HOST = new HttpHost("www.catalogueoflife.org",80);

    public static final String ID = "species2000col";

    public static final String LABEL = "Species2000 - Catalogue Of Life";

    public static final String URL = "http://www.catalogueoflife.org";

    public static final String DATA_AGR_URL = "http://www.catalogueoflife.org/col/info/copyright";

    public static final EnumSet<SearchMode> SEARCH_MODES = EnumSet.of(SearchMode.scientificNameExact);

    public Species2000ColClient() {

        super();

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public void initQueryClient() {

        queryClient = new RestClient(HTTP_HOST);

    }

    @Override

    public ServiceProviderInfo buildServiceProviderInfo() {

        ServiceProviderInfo checklistInfo = new ServiceProviderInfo(ID,LABEL,URL,DATA_AGR_URL, getSearchModes());

        return checklistInfo;

    }

    @Override

    public void resolveScientificNamesExact(TnrMsg tnrMsg) throws DRFChecklistException {

        Query query = singleQueryFrom(tnrMsg);

        //http://www.catalogueoflife.org/col/webservice?response=full&name={sciName}

        Map<String, String> paramMap = new HashMap<String, String>();

        paramMap.put("response", "full");

        URI taxonUri = queryClient.buildUriFromQuery(query,

                "/col/webservice",

                "name",

                paramMap);

        String responseBody = queryClient.get(taxonUri);

        DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();

        DocumentBuilder parser;

        try {

            parser = factory.newDocumentBuilder();

        Document doc = parser.parse(new InputSource(new StringReader(responseBody)));

        XPathExpression xp = XPathFactory.newInstance().newXPath().compile("/results/result[1]/name_status");

        Node nameStatusNode = (Node) xp.evaluate(doc, XPathConstants.NODE);

        if(nameStatusNode != null) {

            String nameStatus = nameStatusNode.getTextContent();

            if(nameStatus.equals("synonym")) {

                xp = XPathFactory.newInstance().newXPath().compile("/results/result[1]/accepted_name/id");

                Node synTaxonIdNode = (Node) xp.evaluate(doc, XPathConstants.NODE);

                if(synTaxonIdNode != null) {

                    String synTaxonId = synTaxonIdNode.getTextContent();

                    //http://www.catalogueoflife.org/col/webservice?response=full&id={sciId}

                    taxonUri = queryClient.buildUriFromQueryString(synTaxonId,

                            "/col/webservice",

                            "id",

                            paramMap);

                    responseBody = queryClient.get(taxonUri);

                } else {

                    responseBody = null;

                }

            }

        }

        updateQueryWithResponse(query, responseBody);

        } catch (ParserConfigurationException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (SAXException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (IOException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (XPathExpressionException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        }

    }

    private void updateQueryWithResponse(Query query, String colXMLResponse) {

        Source inSource = new StreamSource(new StringReader(colXMLResponse));

        Source xslSource = new StreamSource(new StringReader(BiovelUtils.getResourceAsString("/org/cybertaxonomy/utis/tnr/colres_to_synres.xsl","UTF-8")));

        // the factory pattern supports different XSLT processors

        // e.g. set the "javax.xml.transform.TransformerFactory" system property

        TransformerFactory tnfFact = TransformerFactory.newInstance();

        Transformer tnf;

        try {

            tnf = tnfFact.newTransformer(xslSource);

            Writer outputWriter = new StringWriter();

            tnf.transform(inSource, new StreamResult(outputWriter));

            String tnrResponseXML = outputWriter.toString();

            System.out.println(tnrResponseXML);

            Response tnrResponse = TnrMsgUtils.convertXMLToTnrResponse(tnrResponseXML);

            query.getResponse().add(tnrResponse);

        } catch (TransformerException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (JAXBException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (ParserConfigurationException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (SAXException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        } catch (IOException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        }

    }

    @Override

    public void resolveScientificNamesLike(TnrMsg tnrMsg) throws DRFChecklistException {

        // TODO Auto-generated method stub

    }

    @Override

    public void resolveVernacularNamesExact(TnrMsg tnrMsg) throws DRFChecklistException {

        // TODO Auto-generated method stub

    }

    @Override

    public EnumSet<SearchMode> getSearchModes() {

        return SEARCH_MODES;

    }

    @Override

    public void resolveVernacularNamesLike(TnrMsg tnrMsg) throws DRFChecklistException {

        // TODO Auto-generated method stub

    }

    @Override

    public boolean isSupportedIdentifier(String value) {

        return IdentifierUtils.checkLSID(value);

    }

    @Override

    public void findByIdentifier(TnrMsg tnrMsg) throws DRFChecklistException {

        // TODO Auto-generated method stub

    }

}