Revision fa9bf282
Added by Patrick Plitzner over 8 years ago
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/association/TaxonAssociationDetailElement.java | ||
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| 11 | 11 |
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import java.util.ArrayList; |
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import java.util.Collection; |
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import java.util.Set; |
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import java.util.UUID; |
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|
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import org.eclipse.core.commands.Command; |
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import org.eclipse.core.commands.ExecutionException; |
| ... | ... | |
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import org.eclipse.jface.viewers.DoubleClickEvent; |
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import org.eclipse.jface.viewers.IDoubleClickListener; |
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import org.eclipse.jface.viewers.IStructuredSelection; |
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import org.eclipse.jface.viewers.LabelProvider; |
|
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import org.eclipse.jface.viewers.TableViewer; |
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import org.eclipse.swt.SWT; |
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import org.eclipse.swt.widgets.Label; |
| ... | ... | |
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|
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade; |
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import eu.etaxonomy.cdm.api.service.IOccurrenceService; |
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent; |
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import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
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import eu.etaxonomy.taxeditor.model.MessagingUtils; |
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import eu.etaxonomy.taxeditor.store.CdmStore; |
| ... | ... | |
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*/ |
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public class TaxonAssociationDetailElement extends AbstractCdmDetailElement<DerivedUnitFacade> implements IDoubleClickListener{
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private TableViewer associationsViewer; |
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public TaxonAssociationDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
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super(formFactory, formElement); |
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} |
| ... | ... | |
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|
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//TODO add context menu for deleting associations |
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Collection<TaxonBase<?>> associatedTaxa = CdmStore.getService(IOccurrenceService.class).listAssociatedTaxa(entity.innerDerivedUnit(), null, null, null, null); |
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Collection<TaxonBase<?>> associatedTaxa = CdmStore.getService(IOccurrenceService.class).listIndividualsAssociationTaxa(entity.innerDerivedUnit(), null, null, null, null); |
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Collection<SpecimenTypeDesignation> typeDesignations = CdmStore.getService(IOccurrenceService.class).listTypeDesignations(entity.innerDerivedUnit(), null, null, null, null); |
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Collection<DeterminationEvent> determinationEvents = CdmStore.getService(IOccurrenceService.class).listDeterminationEvents(entity.innerDerivedUnit(), null, null, null, null); |
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if(!associatedTaxa.isEmpty()){
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associationsViewer = new TableViewer(getLayoutComposite(), SWT.FULL_SELECTION); |
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associationsViewer.getTable().setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1)); |
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associationsViewer.setContentProvider(new ArrayContentProvider()); |
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associationsViewer.setInput(associatedTaxa); |
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associationsViewer.addDoubleClickListener(this); |
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} |
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else{
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if(associatedTaxa.isEmpty() && typeDesignations.isEmpty() && determinationEvents.isEmpty()){
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Label label = formFactory.createLabel(getLayoutComposite(), "No associations"); |
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label.setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1)); |
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return; |
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} |
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if(!associatedTaxa.isEmpty()){
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TableViewer viewer = new TableViewer(getLayoutComposite(), SWT.FULL_SELECTION); |
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viewer.getTable().setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1)); |
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viewer.setContentProvider(new ArrayContentProvider()); |
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viewer.setLabelProvider(new LabelProvider(){
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@Override |
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public String getText(Object element) {
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return "Associated with "+element.toString(); |
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} |
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}); |
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viewer.setInput(associatedTaxa); |
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viewer.addDoubleClickListener(this); |
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} |
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if(!typeDesignations.isEmpty()){
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TableViewer viewer = new TableViewer(getLayoutComposite(), SWT.FULL_SELECTION); |
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viewer.getTable().setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1)); |
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viewer.setContentProvider(new ArrayContentProvider()); |
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viewer.setLabelProvider(new LabelProvider(){
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@Override |
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public String getText(Object element) {
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SpecimenTypeDesignation typeDesignation = (SpecimenTypeDesignation)element; |
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String label = typeDesignation.getTypeStatus().getLabel()+" of "; |
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Set<TaxonNameBase> typifiedNames = typeDesignation.getTypifiedNames(); |
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for (TaxonNameBase taxonNameBase : typifiedNames) {
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label += taxonNameBase+", "; |
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} |
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if(label.endsWith(", ")){
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label = label.substring(0, label.length()-2); |
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} |
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return label; |
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} |
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}); |
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viewer.setInput(typeDesignations); |
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viewer.addDoubleClickListener(this); |
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} |
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if(!determinationEvents.isEmpty()){
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TableViewer viewer = new TableViewer(getLayoutComposite(), SWT.FULL_SELECTION); |
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viewer.getTable().setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1)); |
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viewer.setContentProvider(new ArrayContentProvider()); |
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viewer.setLabelProvider(new LabelProvider(){
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@Override |
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public String getText(Object element) {
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DeterminationEvent determinationEvent = (DeterminationEvent)element; |
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if(determinationEvent.getTaxon()!=null){
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return "Determined as taxon "+determinationEvent.getTaxon(); |
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} |
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if(determinationEvent.getTaxonName()!=null){
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return "Determined as name "+determinationEvent.getTaxonName(); |
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} |
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return element.toString(); |
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} |
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}); |
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viewer.setInput(determinationEvents); |
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viewer.addDoubleClickListener(this); |
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} |
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} |
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|
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/** {@inheritDoc} */
|
| ... | ... | |
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public void doubleClick(DoubleClickEvent event) {
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if(event.getSelection() instanceof IStructuredSelection){
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Object firstElement = ((IStructuredSelection) event.getSelection()).getFirstElement(); |
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UUID taxonToOpenUuid = null; |
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if(firstElement instanceof TaxonBase<?>){
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TaxonBase<?> taxonBase = (TaxonBase<?>)firstElement; |
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taxonToOpenUuid = ((TaxonBase<?>)firstElement).getUuid(); |
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} |
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else if(firstElement instanceof SpecimenTypeDesignation){
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//TODO how to open an editor for all typed names? |
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} |
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else if(firstElement instanceof DeterminationEvent){
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if(((DeterminationEvent) firstElement).getTaxon()!=null){
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taxonToOpenUuid = ((DeterminationEvent) firstElement).getTaxon().getUuid(); |
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} |
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else if(((DeterminationEvent) firstElement).getTaxonName()!=null){
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//TODO how to open editor for taxon name |
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} |
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} |
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if(taxonToOpenUuid!=null){
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String commandId = "eu.etaxonomy.taxeditor.editor.openTaxonEditor"; |
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|
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|
| ... | ... | |
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} catch (NotDefinedException e1) {
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MessagingUtils.error(this.getClass(), "Command not defined", e1); |
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} |
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Parameterization params = new Parameterization(iparam, (taxonBase).getUuid().toString());
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Parameterization params = new Parameterization(iparam, taxonToOpenUuid.toString());
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parameters.add(params); |
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//build the parameterized command |
| ... | ... | |
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} |
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} |
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} |
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} |
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/derivateSearch/DerivateLabelProvider.java | ||
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import eu.etaxonomy.cdm.model.molecular.Sequence; |
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import eu.etaxonomy.cdm.model.molecular.SingleRead; |
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
|
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit; |
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent; |
|
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit; |
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import eu.etaxonomy.cdm.model.occurrence.GatheringEvent; |
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen; |
| ... | ... | |
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|
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private static Set<SingleRead> multiLinkSingleReads; |
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private static Map<DerivedUnit, List<DeterminationEvent>> determinationEvents; |
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|
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private static Map<DerivedUnit, List<SpecimenTypeDesignation>> typeDesignations; |
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private ConversationHolder conversation; |
| ... | ... | |
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addTypeDesignation(derivedUnit, specimenTypeDesignation); |
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} |
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} |
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//check for determination events |
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if(determinationEvents.get(derivedUnit)==null){
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for (DeterminationEvent determinationEvent : CdmStore.getService(IOccurrenceService.class).listDeterminationEvents(derivedUnit, null, null, null, null)) {
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addDeterminationEvent(derivedUnit, determinationEvent); |
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} |
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} |
|
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//java.util.Collection<FieldUnit> fieldUnits = CdmStore.getService(IOccurrenceService.class).getFieldUnits(derivedUnit.getUuid()); |
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//TODO : This is not generic anymore for performance reasons |
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Set<SpecimenOrObservationBase> originals = derivedUnit.getOriginals(); |
| ... | ... | |
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} |
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String mostSignificantIdentifier = derivedUnit.getMostSignificantIdentifier(); |
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label += mostSignificantIdentifier!=null?mostSignificantIdentifier+separator:emptyString; |
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//type designation extension |
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List<SpecimenTypeDesignation> typeDesignationList = typeDesignations.get(derivedUnit); |
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if(typeDesignationList!=null){
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for (SpecimenTypeDesignation specimenTypeDesignation : typeDesignationList) {
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label += "("+specimenTypeDesignation.getTypeStatus()+" of ";
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for (TaxonNameBase taxonNameBase : specimenTypeDesignation.getTypifiedNames()) {
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label += taxonNameBase+separator; |
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} |
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if(label.endsWith(separator)){
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label = label.substring(0, label.length()-separator.length()); |
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} |
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label += ")"; |
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} |
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} |
|
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//determination event extension |
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List<DeterminationEvent> determinationEventList = determinationEvents.get(derivedUnit); |
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if(determinationEventList!=null){
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for (DeterminationEvent determinationEvent : determinationEventList) {
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label += "(";
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if(determinationEvent.getTaxon()!=null){
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label += "Determined as "+determinationEvent.getTaxon(); |
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} |
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|
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if(label.endsWith(separator)){
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label = label.substring(0, label.length()-separator.length()); |
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} |
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label += ")"; |
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} |
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} |
|
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} |
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else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.TissueSample){
|
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//TissueSample should only be created by using it's own class |
| ... | ... | |
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} |
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else if(cdmBase.isInstanceOf(DerivedUnit.class)){
|
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DerivedUnit derivedUnit = HibernateProxyHelper.deproxy(element, DerivedUnit.class); |
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|
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boolean isType = false; |
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//type designation extension |
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if(typeDesignations.get(derivedUnit)!=null){
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isType = true; |
|
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} |
|
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if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.FieldUnit){
|
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return hasCharacterData?ImageResources.getImage(ImageResources.FIELD_UNIT_CHARACTER_DATA):ImageResources.getImage(ImageResources.FIELD_UNIT); |
| 374 | 341 |
} |
| ... | ... | |
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} |
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} |
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DerivateLabelProvider.typeDesignations = new HashMap<DerivedUnit, List<SpecimenTypeDesignation>>(); |
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DerivateLabelProvider.determinationEvents = new HashMap<DerivedUnit, List<DeterminationEvent>>(); |
|
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} |
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|
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private static void addDeterminationEvent(DerivedUnit derivedUnit, DeterminationEvent determinationEvent){
|
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List<DeterminationEvent> list = determinationEvents.get(derivedUnit); |
|
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if(list==null){
|
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list = new ArrayList<DeterminationEvent>(); |
|
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} |
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list.add(determinationEvent); |
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determinationEvents.put(derivedUnit, list); |
|
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} |
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|
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private static void addTypeDesignation(DerivedUnit derivedUnit, SpecimenTypeDesignation typeDesignation){
|
Also available in: Unified diff
list specimen-taxon associations separately in specimen details view