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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.service.IVocabularyService;
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import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.model.common.VocabularyEnum;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.occurrence.Collection;
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
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import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
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import eu.etaxonomy.taxeditor.ui.element.CheckboxElement;
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import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
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import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.element.TimePeriodElement;
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import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
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import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
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/**
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* @author pplitzner
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* @date 16.12.2013
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*
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*/
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public class TissueSampleGeneralDetailElement extends AbstractCdmDetailElement<DnaSample> {
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private final TermVocabulary plantKindOfUnitVocabulary = CdmStore.getService(IVocabularyService.class).find(VocabularyEnum.PlantKindOfUnit.getUuid());
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static private final Logger logger = Logger.getLogger(TissueSampleGeneralDetailElement.class);
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private TermComboElement<DefinedTerm> comboKindOfTissue;
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private EntitySelectionElement<Institution> selectionInstitution;
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private EntitySelectionElement<AgentBase> selectionStaff;
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private TimePeriodElement datePreparation;
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private TermComboElement<DefinedTerm> comboPreservationMedium;
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private EntitySelectionElement<Collection> selectionCollection;
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private TextWithLabelElement textAccessionNumber;
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private TextWithLabelElement textBarcode;
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private CheckboxElement checkIsPublish;
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/**
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* @param formFactory
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* @param formElement
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*/
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public TissueSampleGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
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super(formFactory, formElement);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
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* (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
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*/
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@Override
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protected void createControls(ICdmFormElement formElement, DnaSample entity, int style) {
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comboKindOfTissue = formFactory.createDefinedTermComboElement(plantKindOfUnitVocabulary, formElement, "Kind Of Tissue", entity.getKindOfUnit(), style);
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TimePeriod preparationDate = null;
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DefinedTerm preservationMedium = null;
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AgentBase<?> staff = null;
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Institution institution = null;
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if(entity.getDerivedFrom()!=null){
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staff = entity.getDerivedFrom().getActor();
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preparationDate = entity.getDerivedFrom().getTimeperiod();
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institution = entity.getDerivedFrom().getInstitution();
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}
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if(entity.getPreservation()!=null){
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preservationMedium = entity.getPreservation().getMedium();
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}
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selectionInstitution = formFactory.createSelectionElement(Institution.class, //getConversationHolder(),
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formElement, "Institution", institution, EntitySelectionElement.ALL, style);
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selectionStaff = formFactory.createSelectionElement(AgentBase.class, //getConversationHolder(),
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formElement, "Staff", staff, EntitySelectionElement.ALL,style);
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datePreparation = formFactory.createTimePeriodElement(formElement, "Preparation date", preparationDate, style);
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comboPreservationMedium = formFactory.createDefinedTermComboElement(TermType.MaterialOrMethod, formElement, "Preservation medium", preservationMedium, style);
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selectionCollection = formFactory.createSelectionElement(Collection.class, //getConversationHolder(),
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formElement, "Collection", entity.getCollection(), EntitySelectionElement.ALL, style);
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textAccessionNumber = formFactory.createTextWithLabelElement(formElement, "Accession Number", entity.getAccessionNumber(), style);
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textBarcode = formFactory.createTextWithLabelElement(formElement, "Barcode", entity.getBarcode(), style);
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checkIsPublish = formFactory.createCheckbox(formElement, "Publish", entity.isPublish(), style);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
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* .lang.Object)
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*/
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@Override
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public void handleEvent(Object eventSource) {
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if(eventSource==comboKindOfTissue) {
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getEntity().setKindOfUnit(comboKindOfTissue.getSelection());
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}
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else if(eventSource==comboPreservationMedium) {
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addPreservationMethod().setMedium(comboPreservationMedium.getSelection());
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}
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else if(eventSource==selectionCollection){
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getEntity().setCollection(selectionCollection.getSelection());
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}
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else if(eventSource==textAccessionNumber){
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getEntity().setAccessionNumber(textAccessionNumber.getText());
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}
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else if(eventSource==textBarcode){
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getEntity().setBarcode(textBarcode.getText());
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}
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else if(eventSource==datePreparation){
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if(getEntity().getDerivedFrom()!=null){
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getEntity().getDerivedFrom().setTimeperiod(datePreparation.getTimePeriod());
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}
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}
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else if(eventSource==selectionInstitution){
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if(getEntity().getDerivedFrom()!=null){
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getEntity().getDerivedFrom().setInstitution(selectionInstitution.getSelection());
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}
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}
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else if(eventSource==selectionStaff){
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if(getEntity().getDerivedFrom()!=null){
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getEntity().getDerivedFrom().setActor(selectionStaff.getSelection());
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}
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}
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else if(eventSource==checkIsPublish){
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getEntity().setPublish(checkIsPublish.getSelection());
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}
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}
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private PreservationMethod addPreservationMethod(){
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PreservationMethod preservationMethod = null;
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preservationMethod = getEntity().getPreservation();
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if(getEntity().getPreservation()==null){
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preservationMethod = PreservationMethod.NewInstance();
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getEntity().setPreservation(preservationMethod);
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}
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return preservationMethod;
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}
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}
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