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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.io.e4.in.ris;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import javax.inject.Inject;
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import org.apache.commons.io.IOUtils;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import org.eclipse.core.runtime.jobs.Job;
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import org.eclipse.e4.core.contexts.ContextInjectionFactory;
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import org.eclipse.e4.core.contexts.IEclipseContext;
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import org.eclipse.e4.ui.workbench.modeling.EPartService;
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import eu.etaxonomy.cdm.common.URI;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
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import eu.etaxonomy.cdm.io.reference.ris.in.RisReferenceImportConfigurator;
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import eu.etaxonomy.taxeditor.io.e4.in.AbstractImportWizardE4;
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import eu.etaxonomy.taxeditor.io.e4.in.GenericConfiguratorWizardPageE4;
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import eu.etaxonomy.taxeditor.io.e4.in.ImportFromFileDataSourceWithReferenceWizardPage;
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import eu.etaxonomy.taxeditor.io.e4.in.excel.distribution.ExcelDistributionUpdateWizardE4;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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/**
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* @author k.luther
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* @date 12.05.2017
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*/
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public class RISImportWizardE4 extends AbstractImportWizardE4<RisReferenceImportConfigurator>{
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private RisReferenceImportConfigurator configurator;
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private ImportFromFileDataSourceWithReferenceWizardPage dataSourcePage;
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private static final Logger logger = LogManager.getLogger(ExcelDistributionUpdateWizardE4.class);
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@Inject
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public RISImportWizardE4(IEclipseContext context, EPartService partService) {
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super(context, partService);
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}
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@Override
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public RisReferenceImportConfigurator getConfigurator() {
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return configurator;
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}
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@Override
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public boolean performFinish() {
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URI source = dataSourcePage.getUri();
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configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
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File file = new File(source.getJavaUri());
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FileInputStream fis;
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try {
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fis = new FileInputStream(file);
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byte[] data;
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data = IOUtils.toByteArray(fis);
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configurator.setStream(data);
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//TODO: workaround, needs to be changed to source as byte array
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Job job = CdmStore.getImportManager().createIOServiceJob(configurator, data, SOURCE_TYPE.INPUTSTREAM);
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CdmStore.getImportManager().run(job);
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} catch (FileNotFoundException e) {
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logger.error("Error while reading file" + source.toString());
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} catch (IOException e){
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}
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return true;
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}
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@Override
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public void init() {
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configurator = RisReferenceImportConfigurator.NewInstance();
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}
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@Override
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public void addPages() {
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addDataSourcePage();
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}
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@Override
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protected void addConfiguratorPage(){
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List<String> ignoreMethods = new ArrayList<>();
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ignoreMethods.add("setIgnoreNull");
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ignoreMethods.add("setInteractWithUser");
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ignoreMethods.add("setUseClassification");
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pageConfiguration = ContextInjectionFactory.make(GenericConfiguratorWizardPageE4.class, context);
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pageConfiguration.initImport(getConfigurator(), ignoreMethods, "Ris Import");
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addPage(pageConfiguration);
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}
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private void addDataSourcePage(){
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dataSourcePage = ContextInjectionFactory.make(ImportFromFileDataSourceWithReferenceWizardPage.class, context);
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dataSourcePage.setTitle("Choose Ris File");
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dataSourcePage.setDescription("Please choose a file in RIS format.");
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dataSourcePage.setExtensions(new String[]{"*.txt"});
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addPage(dataSourcePage);
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}
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}
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