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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import java.util.stream.Collectors;
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import org.eclipse.jface.layout.GridDataFactory;
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import org.eclipse.jface.window.Window;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.layout.RowLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Composite;
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import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;
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import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO;
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import eu.etaxonomy.cdm.api.service.dto.SpecimenRowWrapperDTO;
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import eu.etaxonomy.cdm.api.service.dto.TaxonRowWrapperDTO;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.persistence.dto.SpecimenNodeWrapper;
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import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;
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import eu.etaxonomy.taxeditor.model.ImageResources;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.StoreUtil;
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import eu.etaxonomy.taxeditor.ui.dialog.selection.TaxonSelectionDialog;
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/**
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* @author pplitzner
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* @since Jul 9, 2018
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*
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*/
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public class CharacterMatrixBottomToolbar extends Composite{
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private CharacterMatrix matrix;
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public CharacterMatrixBottomToolbar(CharacterMatrix matrix, int style) {
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super(matrix, style);
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this.matrix = matrix;
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init();
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}
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private void init() {
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setLayout(new RowLayout());
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GridDataFactory.fillDefaults().grab(true, false).applyTo(this);
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/**
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* Add description button
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*/
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Button btnAddDescription = new Button(this, SWT.PUSH);
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btnAddDescription.setImage(ImageResources.getImage(ImageResources.ADD_ICON_GREEN));
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btnAddDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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String error = "";
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SpecimenSelectionDialog dialog = new SpecimenSelectionDialog(matrix.getShell(), matrix);
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if(dialog.open()==Window.OK){
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Collection<SpecimenNodeWrapper> wrappers = dialog.getSpecimen();
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for (SpecimenNodeWrapper wrapper : wrappers) {
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SpecimenDescription specimenDescription = CdmStore.getService(IDescriptiveDataSetService.class)
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.findSpecimenDescription(matrix.getDescriptiveDataSet().getUuid(),
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wrapper.getUuidAndTitleCache().getUuid(), true);
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SpecimenRowWrapperDTO rowWrapper = CdmStore.getService(IDescriptiveDataSetService.class)
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.createSpecimenRowWrapper(specimenDescription, matrix.getDescriptiveDataSet());
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if(rowWrapper==null){
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error += specimenDescription;
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continue;
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}
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//add specimen description
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matrix.getDescriptions().add(rowWrapper);
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matrix.getDescriptiveDataSet().addDescription(specimenDescription);
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matrix.getCdmEntitiySession().load(specimenDescription, true);
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matrix.setDirty();
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matrix.getSpecimenCache().remove(wrapper);
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}
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if(CdmUtils.isNotBlank(error)){
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MessagingUtils.warningDialog("Errors during row creation", this,
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String.format("Could not create rows for the following description:\n\n%s", error));
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}
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}
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}
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});
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/**
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* Remove description button
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*/
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Button btnRemoveDescription = new Button(this, SWT.PUSH);
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btnRemoveDescription.setImage(ImageResources.getImage(ImageResources.ACTIVE_DELETE_ICON));
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btnRemoveDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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int[] fullySelectedRowPositions = matrix.getBodyLayer().getSelectionLayer().getFullySelectedRowPositions();
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List<RowWrapperDTO> toRemove = new ArrayList<>();
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for (int i : fullySelectedRowPositions) {
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Object rowObject = matrix.getBodyDataProvider().getRowObject(i);
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if(rowObject instanceof RowWrapperDTO){
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toRemove.add((RowWrapperDTO) rowObject);
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}
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}
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toRemove.forEach(rowToRemove -> {
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matrix.getDescriptions().remove(rowToRemove);
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CdmStore.getService(IDescriptiveDataSetService.class).removeDescription(
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rowToRemove.getDescription().getUuid(), matrix.getDescriptiveDataSet().getUuid());
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});
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}
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});
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/**
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* Aggregate button
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*/
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Button btnAggregate = new Button(this, SWT.PUSH);
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btnAggregate.setText("Aggregate");
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btnAggregate.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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List<TaxonNode> taxonSubtreeFilter = CdmStore.getService(IDescriptiveDataSetService.class).loadFilteredTaxonNodes(matrix.getDescriptiveDataSet(), null);
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List<TaxonNodeDto> nodeDtos = taxonSubtreeFilter.stream()
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.map(node -> new TaxonNodeDto(node)).collect(Collectors.toList());
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TaxonNodeDto parentDto = CdmStore.getService(ITaxonNodeService.class).findCommonParentDto(nodeDtos);
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UUID taxonUuid = parentDto.getTaxonUuid();
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int response = MessagingUtils.confirmDialog(
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"Choose location for the aggregated description",
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String.format("The aggregated description will be stored at "
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+ "the common parent taxon of this data set:\n%s\n\n"
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+ "Do you want to use this taxon?"
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, parentDto.getTaxonTitleCache()), "Yes", "Choose taxon", "Cancel");
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if(response==2){
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return;
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}
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else if(response==1){
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Taxon taxon = TaxonSelectionDialog.selectTaxon(getShell(), null);
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if(taxon==null){
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return;
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}
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taxonUuid = taxon.getUuid();
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}
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List<UUID> descriptionUuids = new ArrayList<>();
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matrix.getDescriptiveDataSet().getDescriptions().forEach(desc->descriptionUuids.add(desc.getUuid()));
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UpdateResult result = CdmStore.getService(IDescriptiveDataSetService.class).aggregateDescription(taxonUuid, descriptionUuids, matrix.getDescriptiveDataSet().getLabel(), matrix.getDescriptiveDataSet().getUuid());
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TaxonDescription taxonDescription = (TaxonDescription) result.getCdmEntity();
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TaxonRowWrapperDTO taxonRowWrapper = CdmStore.getService(IDescriptiveDataSetService.class).createTaxonRowWrapper(taxonDescription.getUuid(), matrix.getDescriptiveDataSet().getUuid());
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matrix.getDescriptions().add(taxonRowWrapper);
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aggregateCategorcialHistogram(matrix.getFeatureToHistogramMap());
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aggregateQuantitativeSummary(matrix.getFeatureToQuantDataStatisticsMap());
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}
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});
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}
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@SuppressWarnings("unchecked")
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private void aggregateCategorcialHistogram(Map<Feature, CategoricalDataHistogram> featureToHistogramMap) {
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featureToHistogramMap.clear();
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matrix.getDescriptions().stream()
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.filter(desc->desc instanceof SpecimenRowWrapperDTO)
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.forEach(o -> ((SpecimenRowWrapperDTO) o).getDescription().getElements().stream()
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.filter(descriptionElement -> descriptionElement instanceof CategoricalData)
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.forEach(categoricalData -> {
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Feature feature = ((CategoricalData) categoricalData).getFeature();
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CategoricalDataHistogram dataHistogram = featureToHistogramMap.get(feature);
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if(dataHistogram==null){
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dataHistogram = new CategoricalDataHistogram(feature);
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}
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featureToHistogramMap.put(feature, dataHistogram);
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((CategoricalData) categoricalData).getStateData()
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.forEach(stateData -> featureToHistogramMap.get(feature).addState(stateData.getState()));
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}));
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}
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@SuppressWarnings("unchecked")
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private void aggregateQuantitativeSummary(Map<Feature, QuantitativeDataStatistics> featureToQuantDataStatisticsMap) {
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featureToQuantDataStatisticsMap.clear();
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matrix.getDescriptions().stream()
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.filter(desc->desc instanceof SpecimenRowWrapperDTO)
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.forEach(o -> ((SpecimenRowWrapperDTO) o).getDescription().getElements().stream()
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.filter(descriptionElement -> descriptionElement instanceof QuantitativeData)
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.forEach(quantData -> {
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Feature feature = ((QuantitativeData) quantData).getFeature();
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QuantitativeDataStatistics dataStatistics = featureToQuantDataStatisticsMap.get(feature);
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if(dataStatistics==null){
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dataStatistics = new QuantitativeDataStatistics();
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}
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featureToQuantDataStatisticsMap.put(feature, dataStatistics);
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dataStatistics.addQuantitativeData((QuantitativeData) quantData);
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}));
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}
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}
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