Revision ecd0d355
Added by Ben Stöver over 7 years ago
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIterator.java | ||
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* @date 29.04.2016 |
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*/ |
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class SequenceIDIterator implements Iterator<String> {
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private boolean containsConsensus; |
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private int singleReadPos; |
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private int singleReadCount; |
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|
| ... | ... | |
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* |
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* @param singleReadCount the number of single read IDs to be returned by this iterator before the consensus sequence |
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*/ |
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public SequenceIDIterator(int singleReadCount) {
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public SequenceIDIterator(int singleReadCount, boolean containsConsensus) {
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super(); |
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this.containsConsensus = containsConsensus; |
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this.singleReadCount = singleReadCount; |
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this.singleReadPos = 0; |
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} |
| ... | ... | |
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@Override |
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public boolean hasNext() {
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return singleReadPos <= singleReadCount;
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return (singleReadPos < singleReadCount) || (containsConsensus && (singleReadPos <= singleReadCount));
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} |
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|
| ... | ... | |
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if (singleReadPos < singleReadCount) {
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return CDMSequenceMatrixAdapter.SINGLE_READ_SEQUENCE_ID_PREFIX + (singleReadPos++); |
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} |
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else if (singleReadPos == singleReadCount) {
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else if (containsConsensus && (singleReadPos == singleReadCount)) {
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singleReadPos++; |
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return CDMSequenceMatrixAdapter.CONSENSUS_SEQUENCE_ID; |
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} |
Also available in: Unified diff
Messages edited.
Support for parameters to export only single reads or only consensus implemented.
JavaDoc extended.