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// $Id$
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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
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import java.io.IOException;
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import java.util.Collection;
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import java.util.EnumSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.lucene.index.CorruptIndexException;
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import org.apache.lucene.queryparser.classic.ParseException;
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import org.hibernate.LockOptions;
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.envers.query.criteria.AuditCriterion;
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import eu.etaxonomy.cdm.api.service.DeleteResult;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.api.service.TaxaAndNamesSearchMode;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
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import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator;
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import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
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import eu.etaxonomy.cdm.api.service.config.IncludedTaxonConfiguration;
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import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator;
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import eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator;
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import eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator;
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import eu.etaxonomy.cdm.api.service.dto.FindByIdentifierDTO;
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import eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO;
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import eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException;
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import eu.etaxonomy.cdm.api.service.exception.HomotypicalGroupChangeException;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.api.service.search.LuceneMultiSearchException;
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import eu.etaxonomy.cdm.api.service.search.SearchResult;
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import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.ISourceable;
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import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.MediaRepresentation;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.model.view.AuditEventRecord;
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import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
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import eu.etaxonomy.cdm.persistence.dto.MergeResult;
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import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
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import eu.etaxonomy.cdm.persistence.fetch.CdmFetch;
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import eu.etaxonomy.cdm.persistence.query.Grouping;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
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import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
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import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
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/**
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* @author pplitzner
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* @date 27.09.2013
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*
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*/
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public class TransientTaxonService implements ITaxonService {
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private final ITaxonService defaultService;
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/**
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* @param defaultTaxonService
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*/
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public TransientTaxonService(ITaxonService defaultTaxonService) {
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this.defaultService = defaultTaxonService;
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}
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/**
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* @param t
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* @param pageSize
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* @param pageNumber
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* @param sort
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
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*/
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@Override
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public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(TaxonBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
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return defaultService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
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}
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/**
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* @param annotatedObj
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* @param status
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* @param pageSize
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* @param pageNumber
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* @param orderHints
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
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*/
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@Override
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public Pager<Annotation> getAnnotations(TaxonBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return defaultService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
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}
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/**
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*
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* @see eu.etaxonomy.cdm.api.service.IService#clear()
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*/
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@Override
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public void clear() {
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defaultService.clear();
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}
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/**
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* @param t
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* @param lockMode
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* @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
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*/
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@Override
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public void lock(TaxonBase t, LockOptions lockOptions) {
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defaultService.lock(t, lockOptions);
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}
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/**
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* @param t
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* @param lockMode
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* @param propertyPaths
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* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
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*/
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@Override
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public void refresh(TaxonBase t, LockOptions lockOptions, List<String> propertyPaths) {
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defaultService.refresh(t, lockOptions, propertyPaths);
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}
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/**
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*
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
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*/
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@Override
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public void updateTitleCache() {
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defaultService.updateTitleCache();
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}
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/**
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* @param t
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
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*/
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@Override
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public AuditEventRecord<TaxonBase> getNextAuditEvent(TaxonBase t) {
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return defaultService.getNextAuditEvent(t);
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}
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/**
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* @param annotatableEntity
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* @param technical
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* @param pageSize
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* @param pageNumber
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* @param orderHints
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
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*/
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@Override
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public Pager<Marker> getMarkers(TaxonBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return defaultService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
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}
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/**
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* @param clazz
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* @param stepSize
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* @param cacheStrategy
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* @param monitor
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
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*/
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@Override
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public void updateTitleCache(Class<? extends TaxonBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<TaxonBase> cacheStrategy, IProgressMonitor monitor) {
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defaultService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
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}
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/**
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* @param t
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
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*/
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@Override
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public AuditEventRecord<TaxonBase> getPreviousAuditEvent(TaxonBase t) {
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return defaultService.getPreviousAuditEvent(t);
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}
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/**
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* @param clazz
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
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*/
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@Override
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public int count(Class<? extends TaxonBase> clazz) {
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return defaultService.count(clazz);
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}
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/**
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* @param clazz
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* @param from
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* @param to
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* @param criteria
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* @param pageSize
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* @param pageValue
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* @param sort
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
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*/
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@Override
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public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(Class<? extends TaxonBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
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return defaultService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
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}
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/**
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* @param lsid
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* @return
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
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*/
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@Override
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public TaxonBase find(LSID lsid) {
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return defaultService.find(lsid);
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}
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/**
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* @param persistentObject
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
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*/
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@Override
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public DeleteResult delete(TaxonBase persistentObject) {
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return defaultService.delete(persistentObject);
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}
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/**
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* @param clazz
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* @param technical
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* @param pageSize
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* @param pageNumber
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
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*/
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@Override
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public List<Object[]> groupMarkers(Class<? extends TaxonBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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return defaultService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
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}
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/**
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* @param uuid
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
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*/
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@Override
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public boolean exists(UUID uuid) {
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return defaultService.exists(uuid);
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}
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/**
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* @param x
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* @param y
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* @return
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
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*/
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@Override
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public TaxonBase replace(TaxonBase x, TaxonBase y) {
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return defaultService.replace(x, y);
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}
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/**
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* @param uuidSet
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
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*/
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@Override
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public List<TaxonBase> find(Set<UUID> uuidSet) {
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return defaultService.find(uuidSet);
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}
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/**
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* @param t
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* @param pageSize
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* @param pageNumber
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
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*/
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@Override
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public Pager<IdentifiableSource> getSources(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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return defaultService.getSources(t, pageSize, pageNumber, propertyPaths);
|
|
327
|
}
|
|
328
|
|
|
329
|
/**
|
|
330
|
* @param sec
|
|
331
|
* @param cdmFetch
|
|
332
|
* @param onlyWithChildren
|
|
333
|
* @return
|
|
334
|
* @deprecated
|
|
335
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
|
|
336
|
*/
|
|
337
|
@Deprecated
|
|
338
|
@Override
|
|
339
|
public List<Taxon> getRootTaxa(Reference sec, CdmFetch cdmFetch, boolean onlyWithChildren) {
|
|
340
|
return defaultService.getRootTaxa(sec, cdmFetch, onlyWithChildren);
|
|
341
|
}
|
|
342
|
|
|
343
|
/**
|
|
344
|
* @param uuid
|
|
345
|
* @return
|
|
346
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
|
|
347
|
*/
|
|
348
|
@Override
|
|
349
|
public TaxonBase find(UUID uuid) {
|
|
350
|
return defaultService.find(uuid);
|
|
351
|
}
|
|
352
|
|
|
353
|
/**
|
|
354
|
* @param rank
|
|
355
|
* @param sec
|
|
356
|
* @param onlyWithChildren
|
|
357
|
* @param withMisapplications
|
|
358
|
* @param propertyPaths
|
|
359
|
* @return
|
|
360
|
* @deprecated
|
|
361
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
|
|
362
|
*/
|
|
363
|
@Deprecated
|
|
364
|
@Override
|
|
365
|
public List<Taxon> getRootTaxa(Rank rank, Reference sec, boolean onlyWithChildren, boolean withMisapplications, List<String> propertyPaths) {
|
|
366
|
return defaultService.getRootTaxa(rank, sec, onlyWithChildren, withMisapplications, propertyPaths);
|
|
367
|
}
|
|
368
|
|
|
369
|
/**
|
|
370
|
* @param id
|
|
371
|
* @return
|
|
372
|
* @see eu.etaxonomy.cdm.api.service.IService#find(int)
|
|
373
|
*/
|
|
374
|
@Override
|
|
375
|
public TaxonBase find(int id) {
|
|
376
|
return defaultService.find(id);
|
|
377
|
}
|
|
378
|
|
|
379
|
/**
|
|
380
|
* @param t
|
|
381
|
* @param pageSize
|
|
382
|
* @param pageNumber
|
|
383
|
* @param propertyPaths
|
|
384
|
* @return
|
|
385
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
386
|
*/
|
|
387
|
@Override
|
|
388
|
public Pager<Rights> getRights(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
389
|
return defaultService.getRights(t, pageSize, pageNumber, propertyPaths);
|
|
390
|
}
|
|
391
|
|
|
392
|
/**
|
|
393
|
* @param clazz
|
|
394
|
* @param technical
|
|
395
|
* @return
|
|
396
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
|
|
397
|
*/
|
|
398
|
@Override
|
|
399
|
public int countMarkers(Class<? extends TaxonBase> clazz, Boolean technical) {
|
|
400
|
return defaultService.countMarkers(clazz, technical);
|
|
401
|
}
|
|
402
|
|
|
403
|
/**
|
|
404
|
* @param idSet
|
|
405
|
* @return
|
|
406
|
* @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
|
|
407
|
*/
|
|
408
|
@Override
|
|
409
|
public List<TaxonBase> findById(Set<Integer> idSet) {
|
|
410
|
return defaultService.findById(idSet);
|
|
411
|
}
|
|
412
|
|
|
413
|
/**
|
|
414
|
* @param clazz
|
|
415
|
* @param idInSource
|
|
416
|
* @param idNamespace
|
|
417
|
* @return
|
|
418
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
|
|
419
|
*/
|
|
420
|
@Override
|
|
421
|
public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
|
|
422
|
return defaultService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
|
|
423
|
}
|
|
424
|
|
|
425
|
/**
|
|
426
|
* @return
|
|
427
|
* @see eu.etaxonomy.cdm.api.service.IService#getSession()
|
|
428
|
*/
|
|
429
|
@Override
|
|
430
|
public Session getSession() {
|
|
431
|
return defaultService.getSession();
|
|
432
|
}
|
|
433
|
|
|
434
|
/**
|
|
435
|
* @param clazz
|
|
436
|
* @param limit
|
|
437
|
* @param start
|
|
438
|
* @param groups
|
|
439
|
* @param propertyPaths
|
|
440
|
* @return
|
|
441
|
* @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
442
|
*/
|
|
443
|
@Override
|
|
444
|
public List<Object[]> group(Class<? extends TaxonBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
|
|
445
|
return defaultService.group(clazz, limit, start, groups, propertyPaths);
|
|
446
|
}
|
|
447
|
|
|
448
|
/**
|
|
449
|
* @param limit
|
|
450
|
* @param start
|
|
451
|
* @return
|
|
452
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
|
|
453
|
*/
|
|
454
|
@Override
|
|
455
|
public List<RelationshipBase> getAllRelationships(int limit, int start) {
|
|
456
|
return defaultService.getAllRelationships(limit, start);
|
|
457
|
}
|
|
458
|
|
|
459
|
/**
|
|
460
|
* @param clazz
|
|
461
|
* @param queryString
|
|
462
|
* @param matchmode
|
|
463
|
* @param criteria
|
|
464
|
* @param pageSize
|
|
465
|
* @param pageNumber
|
|
466
|
* @param orderHints
|
|
467
|
* @param propertyPaths
|
|
468
|
* @return
|
|
469
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
470
|
*/
|
|
471
|
@Override
|
|
472
|
public Pager<TaxonBase> findByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
473
|
return defaultService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
474
|
}
|
|
475
|
|
|
476
|
/**
|
|
477
|
* @return
|
|
478
|
* @deprecated
|
|
479
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
|
|
480
|
*/
|
|
481
|
@Deprecated
|
|
482
|
@Override
|
|
483
|
public OrderedTermVocabulary<TaxonRelationshipType> getTaxonRelationshipTypeVocabulary() {
|
|
484
|
return defaultService.getTaxonRelationshipTypeVocabulary();
|
|
485
|
}
|
|
486
|
|
|
487
|
/**
|
|
488
|
* @param name
|
|
489
|
* @param sec
|
|
490
|
* @return
|
|
491
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
|
|
492
|
*/
|
|
493
|
@Override
|
|
494
|
public List<TaxonBase> searchTaxaByName(String name, Reference sec) {
|
|
495
|
return defaultService.searchTaxaByName(name, sec);
|
|
496
|
}
|
|
497
|
|
|
498
|
|
|
499
|
/**
|
|
500
|
* {@inheritDoc}
|
|
501
|
*/
|
|
502
|
@Override
|
|
503
|
public UpdateResult swapSynonymAndAcceptedTaxon(Synonym arg0, Taxon arg1) {
|
|
504
|
return defaultService.swapSynonymAndAcceptedTaxon(arg0, arg1);
|
|
505
|
|
|
506
|
}
|
|
507
|
|
|
508
|
/**
|
|
509
|
* @param type
|
|
510
|
* @param limit
|
|
511
|
* @param start
|
|
512
|
* @param orderHints
|
|
513
|
* @param propertyPaths
|
|
514
|
* @return
|
|
515
|
* @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
516
|
*/
|
|
517
|
@Override
|
|
518
|
public <S extends TaxonBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
519
|
return defaultService.list(type, limit, start, orderHints, propertyPaths);
|
|
520
|
}
|
|
521
|
|
|
522
|
/**
|
|
523
|
* @param configurator
|
|
524
|
* @return
|
|
525
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
526
|
*/
|
|
527
|
@Override
|
|
528
|
public Pager<TaxonBase> findByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
|
|
529
|
return defaultService.findByTitle(configurator);
|
|
530
|
}
|
|
531
|
|
|
532
|
/**
|
|
533
|
* @param synonym
|
|
534
|
* @param acceptedTaxon
|
|
535
|
* @param deleteSynonym
|
|
536
|
* @param copyCitationInfo
|
|
537
|
* @param citation
|
|
538
|
* @param microCitation
|
|
539
|
* @return
|
|
540
|
* @throws HomotypicalGroupChangeException
|
|
541
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
542
|
*/
|
|
543
|
@Override
|
|
544
|
public Taxon changeSynonymToAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon, boolean deleteSynonym, boolean copyCitationInfo, Reference citation, String microCitation) throws HomotypicalGroupChangeException {
|
|
545
|
return defaultService.changeSynonymToAcceptedTaxon(synonym, acceptedTaxon, deleteSynonym, copyCitationInfo, citation, microCitation);
|
|
546
|
}
|
|
547
|
|
|
548
|
/**
|
|
549
|
* @param clazz
|
|
550
|
* @param queryString
|
|
551
|
* @param matchmode
|
|
552
|
* @param criteria
|
|
553
|
* @return
|
|
554
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
|
|
555
|
*/
|
|
556
|
@Override
|
|
557
|
public Integer countByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
|
|
558
|
return defaultService.countByTitle(clazz, queryString, matchmode, criteria);
|
|
559
|
}
|
|
560
|
|
|
561
|
/**
|
|
562
|
* @param uuid
|
|
563
|
* @return
|
|
564
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
|
|
565
|
*/
|
|
566
|
@Override
|
|
567
|
public TaxonBase load(UUID uuid) {
|
|
568
|
return defaultService.load(uuid);
|
|
569
|
}
|
|
570
|
|
|
571
|
/**
|
|
572
|
* @param uuid
|
|
573
|
* @param propertyPaths
|
|
574
|
* @return
|
|
575
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
|
|
576
|
*/
|
|
577
|
@Override
|
|
578
|
public TaxonBase load(UUID uuid, List<String> propertyPaths) {
|
|
579
|
return defaultService.load(uuid, propertyPaths);
|
|
580
|
}
|
|
581
|
|
|
582
|
/**
|
|
583
|
* @param configurator
|
|
584
|
* @return
|
|
585
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
586
|
*/
|
|
587
|
@Override
|
|
588
|
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
|
|
589
|
return defaultService.countByTitle(configurator);
|
|
590
|
}
|
|
591
|
|
|
592
|
/**
|
|
593
|
* @param transientObject
|
|
594
|
* @return
|
|
595
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
596
|
*/
|
|
597
|
@Override
|
|
598
|
public TaxonBase merge(TaxonBase transientObject) {
|
|
599
|
return defaultService.merge(transientObject);
|
|
600
|
}
|
|
601
|
|
|
602
|
/**
|
|
603
|
* @param clazz
|
|
604
|
* @param queryString
|
|
605
|
* @param matchmode
|
|
606
|
* @param criteria
|
|
607
|
* @param pageSize
|
|
608
|
* @param pageNumber
|
|
609
|
* @param orderHints
|
|
610
|
* @param propertyPaths
|
|
611
|
* @return
|
|
612
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
613
|
*/
|
|
614
|
@Override
|
|
615
|
public List<TaxonBase> listByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
616
|
return defaultService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
617
|
}
|
|
618
|
|
|
619
|
/**
|
|
620
|
* @param type
|
|
621
|
* @param pageSize
|
|
622
|
* @param pageNumber
|
|
623
|
* @param orderHints
|
|
624
|
* @param propertyPaths
|
|
625
|
* @return
|
|
626
|
* @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
627
|
*/
|
|
628
|
@Override
|
|
629
|
public <S extends TaxonBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
630
|
return defaultService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
631
|
}
|
|
632
|
|
|
633
|
/**
|
|
634
|
* @param persistentObject
|
|
635
|
* @return
|
|
636
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
637
|
*/
|
|
638
|
@Override
|
|
639
|
public UUID refresh(TaxonBase persistentObject) {
|
|
640
|
return defaultService.refresh(persistentObject);
|
|
641
|
}
|
|
642
|
|
|
643
|
/**
|
|
644
|
* @param synonym
|
|
645
|
* @param toTaxon
|
|
646
|
* @param taxonRelationshipType
|
|
647
|
* @param reference
|
|
648
|
* @param microReference
|
|
649
|
* @return
|
|
650
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
651
|
*/
|
|
652
|
@Override
|
|
653
|
public Taxon changeSynonymToRelatedTaxon(Synonym synonym, Taxon toTaxon, TaxonRelationshipType taxonRelationshipType, Reference reference, String microReference) {
|
|
654
|
return defaultService.changeSynonymToRelatedTaxon(synonym, toTaxon, taxonRelationshipType, reference, microReference);
|
|
655
|
}
|
|
656
|
|
|
657
|
/**
|
|
658
|
* @param clazz
|
|
659
|
* @param queryString
|
|
660
|
* @param matchmode
|
|
661
|
* @param criteria
|
|
662
|
* @param pageSize
|
|
663
|
* @param pageNumber
|
|
664
|
* @param orderHints
|
|
665
|
* @param propertyPaths
|
|
666
|
* @return
|
|
667
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
668
|
*/
|
|
669
|
@Override
|
|
670
|
public List<TaxonBase> listByReferenceTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
671
|
return defaultService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
672
|
}
|
|
673
|
|
|
674
|
/**
|
|
675
|
* @param tableName
|
|
676
|
* @param limit
|
|
677
|
* @param start
|
|
678
|
* @return
|
|
679
|
* @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
|
|
680
|
*/
|
|
681
|
@Override
|
|
682
|
public List<TaxonBase> rows(String tableName, int limit, int start) {
|
|
683
|
return defaultService.rows(tableName, limit, start);
|
|
684
|
}
|
|
685
|
|
|
686
|
/**
|
|
687
|
* @param newInstances
|
|
688
|
* @return
|
|
689
|
* @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
|
|
690
|
*/
|
|
691
|
@Override
|
|
692
|
public Map<UUID, TaxonBase> save(Collection<TaxonBase> newInstances) {
|
|
693
|
return null;
|
|
694
|
}
|
|
695
|
|
|
696
|
/**
|
|
697
|
* @param syn
|
|
698
|
* @param taxon
|
|
699
|
* @return
|
|
700
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
|
|
701
|
*/
|
|
702
|
@Override
|
|
703
|
public long deleteSynonymRelationships(Synonym syn, Taxon taxon) {
|
|
704
|
return defaultService.deleteSynonymRelationships(syn, taxon);
|
|
705
|
}
|
|
706
|
|
|
707
|
/**
|
|
708
|
* @param newInstance
|
|
709
|
* @return
|
|
710
|
* @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
711
|
*/
|
|
712
|
@Override
|
|
713
|
public TaxonBase save(TaxonBase newInstance) {
|
|
714
|
return null;
|
|
715
|
}
|
|
716
|
|
|
717
|
/**
|
|
718
|
* @param transientObject
|
|
719
|
* @return
|
|
720
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
721
|
*/
|
|
722
|
@Override
|
|
723
|
public UUID saveOrUpdate(TaxonBase transientObject) {
|
|
724
|
return null;
|
|
725
|
}
|
|
726
|
|
|
727
|
/**
|
|
728
|
* @param synonym
|
|
729
|
* @param newHomotypicalGroup
|
|
730
|
* @param targetTaxon
|
|
731
|
* @param removeFromOtherTaxa
|
|
732
|
* @param setBasionymRelationIfApplicable
|
|
733
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
|
|
734
|
*/
|
|
735
|
@Override
|
|
736
|
public void changeHomotypicalGroupOfSynonym(Synonym synonym, HomotypicalGroup newHomotypicalGroup, Taxon targetTaxon, boolean removeFromOtherTaxa, boolean setBasionymRelationIfApplicable) {
|
|
737
|
defaultService.changeHomotypicalGroupOfSynonym(synonym, newHomotypicalGroup, targetTaxon, removeFromOtherTaxa, setBasionymRelationIfApplicable);
|
|
738
|
}
|
|
739
|
|
|
740
|
/**
|
|
741
|
* @param transientObjects
|
|
742
|
* @return
|
|
743
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
|
|
744
|
*/
|
|
745
|
@Override
|
|
746
|
public Map<UUID, TaxonBase> saveOrUpdate(Collection<TaxonBase> transientObjects) {
|
|
747
|
return null;
|
|
748
|
}
|
|
749
|
|
|
750
|
/**
|
|
751
|
* @param transientObject
|
|
752
|
* @return
|
|
753
|
* @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
754
|
*/
|
|
755
|
@Override
|
|
756
|
public UUID update(TaxonBase transientObject) {
|
|
757
|
return defaultService.update(transientObject);
|
|
758
|
}
|
|
759
|
|
|
760
|
/**
|
|
761
|
* @param example
|
|
762
|
* @param includeProperties
|
|
763
|
* @param limit
|
|
764
|
* @param start
|
|
765
|
* @param orderHints
|
|
766
|
* @param propertyPaths
|
|
767
|
* @return
|
|
768
|
* @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
769
|
*/
|
|
770
|
@Override
|
|
771
|
public List<TaxonBase> list(TaxonBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
772
|
return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
|
|
773
|
}
|
|
774
|
|
|
775
|
/**
|
|
776
|
* @param oldSynonymRelation
|
|
777
|
* @param newTaxon
|
|
778
|
* @param moveHomotypicGroup
|
|
779
|
* @param newSynonymRelationshipType
|
|
780
|
* @param newReference
|
|
781
|
* @param newReferenceDetail
|
|
782
|
* @param keepReference
|
|
783
|
* @return
|
|
784
|
* @throws HomotypicalGroupChangeException
|
|
785
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
|
|
786
|
*/
|
|
787
|
@Override
|
|
788
|
public UpdateResult moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation, Taxon newTaxon, boolean moveHomotypicGroup, SynonymRelationshipType newSynonymRelationshipType, Reference newReference, String newReferenceDetail, boolean keepReference) throws HomotypicalGroupChangeException {
|
|
789
|
return defaultService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxon, moveHomotypicGroup, newSynonymRelationshipType, newReference, newReferenceDetail, keepReference);
|
|
790
|
}
|
|
791
|
|
|
792
|
/**
|
|
793
|
* @param clazz
|
|
794
|
* @param matchStrategy
|
|
795
|
* @param mergeStrategy
|
|
796
|
* @return
|
|
797
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
|
|
798
|
*/
|
|
799
|
@Override
|
|
800
|
public int deduplicate(Class<? extends TaxonBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
|
801
|
return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy);
|
|
802
|
}
|
|
803
|
|
|
804
|
/**
|
|
805
|
* @param clazz
|
|
806
|
* @param queryString
|
|
807
|
* @param pageSize
|
|
808
|
* @param pageNumber
|
|
809
|
* @param orderHints
|
|
810
|
* @param matchMode
|
|
811
|
* @return
|
|
812
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
|
|
813
|
*/
|
|
814
|
@Override
|
|
815
|
public Pager<TaxonBase> findTitleCache(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
|
|
816
|
return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
|
|
817
|
}
|
|
818
|
|
|
819
|
/**
|
|
820
|
* @param taxon
|
|
821
|
* @param type
|
|
822
|
* @param pageSize
|
|
823
|
* @param pageNumber
|
|
824
|
* @param orderHints
|
|
825
|
* @param propertyPaths
|
|
826
|
* @return
|
|
827
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
828
|
*/
|
|
829
|
@Override
|
|
830
|
public List<TaxonRelationship> listToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
831
|
return defaultService.listToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
832
|
}
|
|
833
|
|
|
834
|
/**
|
|
835
|
* @param taxon
|
|
836
|
* @param type
|
|
837
|
* @param pageSize
|
|
838
|
* @param pageNumber
|
|
839
|
* @param orderHints
|
|
840
|
* @param propertyPaths
|
|
841
|
* @return
|
|
842
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
843
|
*/
|
|
844
|
@Override
|
|
845
|
public Pager<TaxonRelationship> pageToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
846
|
return defaultService.pageToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
847
|
}
|
|
848
|
|
|
849
|
/**
|
|
850
|
* @param taxon
|
|
851
|
* @param type
|
|
852
|
* @param pageSize
|
|
853
|
* @param pageNumber
|
|
854
|
* @param orderHints
|
|
855
|
* @param propertyPaths
|
|
856
|
* @return
|
|
857
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
858
|
*/
|
|
859
|
@Override
|
|
860
|
public List<TaxonRelationship> listFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
861
|
return defaultService.listFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
862
|
}
|
|
863
|
|
|
864
|
/**
|
|
865
|
* @param taxon
|
|
866
|
* @param type
|
|
867
|
* @param pageSize
|
|
868
|
* @param pageNumber
|
|
869
|
* @param orderHints
|
|
870
|
* @param propertyPaths
|
|
871
|
* @return
|
|
872
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
873
|
*/
|
|
874
|
@Override
|
|
875
|
public Pager<TaxonRelationship> pageFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
876
|
return defaultService.pageFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
877
|
}
|
|
878
|
|
|
879
|
/**
|
|
880
|
* @param taxon
|
|
881
|
* @param includeRelationships
|
|
882
|
* @param maxDepth
|
|
883
|
* @param limit
|
|
884
|
* @param start
|
|
885
|
* @param propertyPaths
|
|
886
|
* @return
|
|
887
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
888
|
*/
|
|
889
|
@Override
|
|
890
|
public Set<Taxon> listRelatedTaxa(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Integer maxDepth, Integer limit, Integer start, List<String> propertyPaths) {
|
|
891
|
return defaultService.listRelatedTaxa(taxon, includeRelationships, maxDepth, limit, start, propertyPaths);
|
|
892
|
}
|
|
893
|
|
|
894
|
/**
|
|
895
|
* @param taxonBase
|
|
896
|
* @param limit
|
|
897
|
* @param start
|
|
898
|
* @param propertyPaths
|
|
899
|
* @return
|
|
900
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
901
|
*/
|
|
902
|
@Override
|
|
903
|
public List<Classification> listClassifications(TaxonBase taxonBase, Integer limit, Integer start, List<String> propertyPaths) {
|
|
904
|
return defaultService.listClassifications(taxonBase, limit, start, propertyPaths);
|
|
905
|
}
|
|
906
|
|
|
907
|
/**
|
|
908
|
* @param synonym
|
|
909
|
* @param type
|
|
910
|
* @param pageSize
|
|
911
|
* @param pageNumber
|
|
912
|
* @param orderHints
|
|
913
|
* @param propertyPaths
|
|
914
|
* @return
|
|
915
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
916
|
*/
|
|
917
|
@Override
|
|
918
|
public Pager<SynonymRelationship> getSynonyms(Synonym synonym, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
919
|
return defaultService.getSynonyms(synonym, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
920
|
}
|
|
921
|
|
|
922
|
/**
|
|
923
|
* @param taxon
|
|
924
|
* @param type
|
|
925
|
* @param pageSize
|
|
926
|
* @param pageNumber
|
|
927
|
* @param orderHints
|
|
928
|
* @param propertyPaths
|
|
929
|
* @return
|
|
930
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
931
|
*/
|
|
932
|
@Override
|
|
933
|
public Pager<SynonymRelationship> getSynonyms(Taxon taxon, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
934
|
return defaultService.getSynonyms(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
935
|
}
|
|
936
|
|
|
937
|
/**
|
|
938
|
* @param taxon
|
|
939
|
* @param propertyPaths
|
|
940
|
* @return
|
|
941
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
|
|
942
|
*/
|
|
943
|
@Override
|
|
944
|
public List<Synonym> getHomotypicSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
|
|
945
|
return defaultService.getHomotypicSynonymsByHomotypicGroup(taxon, propertyPaths);
|
|
946
|
}
|
|
947
|
|
|
948
|
/**
|
|
949
|
* @param taxon
|
|
950
|
* @param propertyPaths
|
|
951
|
* @return
|
|
952
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
|
|
953
|
*/
|
|
954
|
@Override
|
|
955
|
public List<List<Synonym>> getHeterotypicSynonymyGroups(Taxon taxon, List<String> propertyPaths) {
|
|
956
|
return defaultService.getHeterotypicSynonymyGroups(taxon, propertyPaths);
|
|
957
|
}
|
|
958
|
|
|
959
|
/**
|
|
960
|
* @param clazz
|
|
961
|
* @param queryString
|
|
962
|
* @param pageSize
|
|
963
|
* @param pageNumber
|
|
964
|
* @param orderHints
|
|
965
|
* @param propertyPaths
|
|
966
|
* @return
|
|
967
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
968
|
*/
|
|
969
|
@Override
|
|
970
|
public Pager<TaxonBase> search(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
971
|
return defaultService.search(clazz, queryString, pageSize, pageNumber, orderHints, propertyPaths);
|
|
972
|
}
|
|
973
|
|
|
974
|
/**
|
|
975
|
* @param clazz
|
|
976
|
* @param uninomial
|
|
977
|
* @param infragenericEpithet
|
|
978
|
* @param specificEpithet
|
|
979
|
* @param infraspecificEpithet
|
|
980
|
* @param rank
|
|
981
|
* @param pageSize
|
|
982
|
* @param pageNumber
|
|
983
|
* @return
|
|
984
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
|
|
985
|
*/
|
|
986
|
@Override
|
|
987
|
public Pager<TaxonBase> findTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
|
|
988
|
return defaultService.findTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
|
|
989
|
}
|
|
990
|
|
|
991
|
/**
|
|
992
|
* @param clazz
|
|
993
|
* @param uninomial
|
|
994
|
* @param infragenericEpithet
|
|
995
|
* @param specificEpithet
|
|
996
|
* @param infraspecificEpithet
|
|
997
|
* @param rank
|
|
998
|
* @param pageSize
|
|
999
|
* @param pageNumber
|
|
1000
|
* @return
|
|
1001
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
|
|
1002
|
*/
|
|
1003
|
@Override
|
|
1004
|
public List<TaxonBase> listTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
|
|
1005
|
return defaultService.listTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
|
|
1006
|
}
|
|
1007
|
|
|
1008
|
/**
|
|
1009
|
* @param configurator
|
|
1010
|
* @return
|
|
1011
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
|
|
1012
|
*/
|
|
1013
|
@Override
|
|
1014
|
public Pager<IdentifiableEntity> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator) {
|
|
1015
|
return defaultService.findTaxaAndNames(configurator);
|
|
1016
|
}
|
|
1017
|
|
|
1018
|
/**
|
|
1019
|
* @param queryString
|
|
1020
|
* @param classification
|
|
1021
|
* @param languages
|
|
1022
|
* @param highlightFragments
|
|
1023
|
* @param pageSize
|
|
1024
|
* @param pageNumber
|
|
1025
|
* @param orderHints
|
|
1026
|
* @param propertyPaths
|
|
1027
|
* @return
|
|
1028
|
* @throws CorruptIndexException
|
|
1029
|
* @throws IOException
|
|
1030
|
* @throws ParseException
|
|
1031
|
* @throws LuceneMultiSearchException
|
|
1032
|
* @deprecated
|
|
1033
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1034
|
*/
|
|
1035
|
@Deprecated
|
|
1036
|
@Override
|
|
1037
|
public Pager<SearchResult<TaxonBase>> findByEverythingFullText(String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
|
|
1038
|
return defaultService.findByEverythingFullText(queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1039
|
}
|
|
1040
|
|
|
1041
|
/**
|
|
1042
|
* @param clazz
|
|
1043
|
* @param queryString
|
|
1044
|
* @param classification
|
|
1045
|
* @param languages
|
|
1046
|
* @param highlightFragments
|
|
1047
|
* @param pageSize
|
|
1048
|
* @param pageNumber
|
|
1049
|
* @param orderHints
|
|
1050
|
* @param propertyPaths
|
|
1051
|
* @return
|
|
1052
|
* @throws CorruptIndexException
|
|
1053
|
* @throws IOException
|
|
1054
|
* @throws ParseException
|
|
1055
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1056
|
*/
|
|
1057
|
@Override
|
|
1058
|
public Pager<SearchResult<TaxonBase>> findByFullText(Class<? extends TaxonBase> clazz, String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
|
1059
|
return defaultService.findByFullText(clazz, queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1060
|
}
|
|
1061
|
|
|
1062
|
|
|
1063
|
/* (non-Javadoc)
|
|
1064
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1065
|
*/
|
|
1066
|
@Override
|
|
1067
|
public Pager<SearchResult<TaxonBase>> findByDistribution(List<NamedArea> areaFilter,
|
|
1068
|
List<PresenceAbsenceTerm> statusFilter, Classification classification, Integer pageSize,
|
|
1069
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws IOException,
|
|
1070
|
ParseException {
|
|
1071
|
return defaultService.findByDistribution(areaFilter, statusFilter, classification, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1072
|
}
|
|
1073
|
|
|
1074
|
|
|
1075
|
/* (non-Javadoc)
|
|
1076
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1077
|
*/
|
|
1078
|
@Override
|
|
1079
|
public Pager<SearchResult<TaxonBase>> findTaxaAndNamesByFullText(EnumSet<TaxaAndNamesSearchMode> searchModes,
|
|
1080
|
String queryString, Classification classification, Set<NamedArea> namedAreas,
|
|
1081
|
Set<PresenceAbsenceTerm> distributionStatus, List<Language> languages, boolean highlightFragments,
|
|
1082
|
Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths)
|
|
1083
|
throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
|
|
1084
|
return defaultService.findTaxaAndNamesByFullText(searchModes, queryString, classification, namedAreas, distributionStatus, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1085
|
}
|
|
1086
|
|
|
1087
|
/**
|
|
1088
|
* @param clazz
|
|
1089
|
* @param queryString
|
|
1090
|
* @param classification
|
|
1091
|
* @param features
|
|
1092
|
* @param languages
|
|
1093
|
* @param highlightFragments
|
|
1094
|
* @param pageSize
|
|
1095
|
* @param pageNumber
|
|
1096
|
* @param orderHints
|
|
1097
|
* @param propertyPaths
|
|
1098
|
* @return
|
|
1099
|
* @throws CorruptIndexException
|
|
1100
|
* @throws IOException
|
|
1101
|
* @throws ParseException
|
|
1102
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1103
|
*/
|
|
1104
|
@Override
|
|
1105
|
public Pager<SearchResult<TaxonBase>> findByDescriptionElementFullText(Class<? extends DescriptionElementBase> clazz, String queryString, Classification classification, List<Feature> features, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
|
1106
|
return defaultService.findByDescriptionElementFullText(clazz, queryString, classification, features, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1107
|
}
|
|
1108
|
|
|
1109
|
/**
|
|
1110
|
* @param taxon
|
|
1111
|
* @param size
|
|
1112
|
* @param height
|
|
1113
|
* @param widthOrDuration
|
|
1114
|
* @param mimeTypes
|
|
1115
|
* @return
|
|
1116
|
* @deprecated
|
|
1117
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
|
|
1118
|
*/
|
|
1119
|
@Deprecated
|
|
1120
|
@Override
|
|
1121
|
public List<MediaRepresentation> getAllMedia(Taxon taxon, int size, int height, int widthOrDuration, String[] mimeTypes) {
|
|
1122
|
return defaultService.getAllMedia(taxon, size, height, widthOrDuration, mimeTypes);
|
|
1123
|
}
|
|
1124
|
|
|
1125
|
/**
|
|
1126
|
* @param taxon
|
|
1127
|
* @param includeRelationships
|
|
1128
|
* @param limitToGalleries
|
|
1129
|
* @param propertyPath
|
|
1130
|
* @return
|
|
1131
|
* @deprecated
|
|
1132
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
|
|
1133
|
*/
|
|
1134
|
@Deprecated
|
|
1135
|
@Override
|
|
1136
|
public List<Media> listTaxonDescriptionMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, boolean limitToGalleries, List<String> propertyPath) {
|
|
1137
|
return defaultService.listTaxonDescriptionMedia(taxon, includeRelationships, limitToGalleries, propertyPath);
|
|
1138
|
}
|
|
1139
|
|
|
1140
|
/**
|
|
1141
|
* @param taxon
|
|
1142
|
* @param includeRelationships
|
|
1143
|
* @param limitToGalleries
|
|
1144
|
* @param includeTaxonDescriptions
|
|
1145
|
* @param includeOccurrences
|
|
1146
|
* @param includeTaxonNameDescriptions
|
|
1147
|
* @param propertyPath
|
|
1148
|
* @return
|
|
1149
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
|
|
1150
|
*/
|
|
1151
|
@Override
|
|
1152
|
public List<Media> listMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Boolean limitToGalleries, Boolean includeTaxonDescriptions, Boolean includeOccurrences, Boolean includeTaxonNameDescriptions, List<String> propertyPath) {
|
|
1153
|
return defaultService.listMedia(taxon, includeRelationships, limitToGalleries, includeTaxonDescriptions, includeOccurrences, includeTaxonNameDescriptions, propertyPath);
|
|
1154
|
}
|
|
1155
|
|
|
1156
|
/**
|
|
1157
|
* @param listOfIDs
|
|
1158
|
* @return
|
|
1159
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
|
|
1160
|
*/
|
|
1161
|
@Override
|
|
1162
|
public List<TaxonBase> findTaxaByID(Set<Integer> listOfIDs) {
|
|
1163
|
return defaultService.findTaxaByID(listOfIDs);
|
|
1164
|
}
|
|
1165
|
|
|
1166
|
/**
|
|
1167
|
* @param uuid
|
|
1168
|
* @param propertyPaths
|
|
1169
|
* @return
|
|
1170
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
|
|
1171
|
*/
|
|
1172
|
@Override
|
|
1173
|
public TaxonBase findTaxonByUuid(UUID uuid, List<String> propertyPaths) {
|
|
1174
|
return defaultService.findTaxonByUuid(uuid, propertyPaths);
|
|
1175
|
}
|
|
1176
|
|
|
1177
|
/**
|
|
1178
|
* @return
|
|
1179
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
|
|
1180
|
*/
|
|
1181
|
@Override
|
|
1182
|
public int countAllRelationships() {
|
|
1183
|
return defaultService.countAllRelationships();
|
|
1184
|
}
|
|
1185
|
|
|
1186
|
/**
|
|
1187
|
* @param propertyPath
|
|
1188
|
* @return
|
|
1189
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
|
|
1190
|
*/
|
|
1191
|
@Override
|
|
1192
|
public List<TaxonNameBase> findIdenticalTaxonNames(List<String> propertyPath) {
|
|
1193
|
return defaultService.findIdenticalTaxonNames(propertyPath);
|
|
1194
|
}
|
|
1195
|
|
|
1196
|
/**
|
|
1197
|
* @param propertyPath
|
|
1198
|
* @return
|
|
1199
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
|
|
1200
|
*/
|
|
1201
|
@Override
|
|
1202
|
public List<TaxonNameBase> findIdenticalTaxonNameIds(List<String> propertyPath) {
|
|
1203
|
return defaultService.findIdenticalTaxonNameIds(propertyPath);
|
|
1204
|
}
|
|
1205
|
|
|
1206
|
/**
|
|
1207
|
* @param name
|
|
1208
|
* @return
|
|
1209
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
|
|
1210
|
*/
|
|
1211
|
@Override
|
|
1212
|
public String getPhylumName(TaxonNameBase name) {
|
|
1213
|
return defaultService.getPhylumName(name);
|
|
1214
|
}
|
|
1215
|
|
|
1216
|
/**
|
|
1217
|
* @param syn
|
|
1218
|
* @return
|
|
1219
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
|
|
1220
|
*/
|
|
1221
|
@Override
|
|
1222
|
public long deleteSynonymRelationships(Synonym syn) {
|
|
1223
|
return defaultService.deleteSynonymRelationships(syn);
|
|
1224
|
}
|
|
1225
|
|
|
1226
|
/**
|
|
1227
|
* @param taxonBase
|
|
1228
|
* @param type
|
|
1229
|
* @param pageSize
|
|
1230
|
* @param pageNumber
|
|
1231
|
* @param orderHints
|
|
1232
|
* @param propertyPaths
|
|
1233
|
* @param direction
|
|
1234
|
* @return
|
|
1235
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
|
|
1236
|
*/
|
|
1237
|
@Override
|
|
1238
|
public List<SynonymRelationship> listSynonymRelationships(TaxonBase taxonBase, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths, Direction direction) {
|
|
1239
|
return defaultService.listSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction);
|
|
1240
|
}
|
|
1241
|
|
|
1242
|
/**
|
|
1243
|
* @param taxonName
|
|
1244
|
* @return
|
|
1245
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
|
|
1246
|
*/
|
|
1247
|
@Override
|
|
1248
|
public Taxon findBestMatchingTaxon(String taxonName) {
|
|
1249
|
return defaultService.findBestMatchingTaxon(taxonName);
|
|
1250
|
}
|
|
1251
|
|
|
1252
|
/**
|
|
1253
|
* @param config
|
|
1254
|
* @return
|
|
1255
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
|
|
1256
|
*/
|
|
1257
|
@Override
|
|
1258
|
public Taxon findBestMatchingTaxon(MatchingTaxonConfigurator config) {
|
|
1259
|
return defaultService.findBestMatchingTaxon(config);
|
|
1260
|
}
|
|
1261
|
|
|
1262
|
/**
|
|
1263
|
* @param taxonName
|
|
1264
|
* @return
|
|
1265
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
|
|
1266
|
*/
|
|
1267
|
@Override
|
|
1268
|
public Synonym findBestMatchingSynonym(String taxonName) {
|
|
1269
|
return defaultService.findBestMatchingSynonym(taxonName);
|
|
1270
|
}
|
|
1271
|
|
|
1272
|
|
|
1273
|
/**
|
|
1274
|
* @param configurator
|
|
1275
|
* @return
|
|
1276
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
|
|
1277
|
*/
|
|
1278
|
@Override
|
|
1279
|
public List<UuidAndTitleCache<IdentifiableEntity>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator) {
|
|
1280
|
return defaultService.findTaxaAndNamesForEditor(configurator);
|
|
1281
|
}
|
|
1282
|
|
|
1283
|
/**
|
|
1284
|
* @param taxon
|
|
1285
|
* @param tree
|
|
1286
|
* @param type
|
|
1287
|
* @param doWithMisappliedNames
|
|
1288
|
* @return
|
|
1289
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
|
|
1290
|
*/
|
|
1291
|
@Override
|
|
1292
|
public List<Synonym> createInferredSynonyms(Taxon taxon, Classification tree, SynonymRelationshipType type, boolean doWithMisappliedNames) {
|
|
1293
|
return defaultService.createInferredSynonyms(taxon, tree, type, doWithMisappliedNames);
|
|
1294
|
}
|
|
1295
|
|
|
1296
|
/**
|
|
1297
|
* @param taxon
|
|
1298
|
* @param tree
|
|
1299
|
* @param doWithMisappliedNames
|
|
1300
|
* @return
|
|
1301
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
|
|
1302
|
*/
|
|
1303
|
@Override
|
|
1304
|
public List<Synonym> createAllInferredSynonyms(Taxon taxon, Classification tree, boolean doWithMisappliedNames) {
|
|
1305
|
return defaultService.createAllInferredSynonyms(taxon, tree, doWithMisappliedNames);
|
|
1306
|
}
|
|
1307
|
|
|
1308
|
@Override
|
|
1309
|
public DeleteResult deleteSynonym(Synonym arg0, SynonymDeletionConfigurator arg1) {
|
|
1310
|
return defaultService.deleteSynonym(arg0, arg1);
|
|
1311
|
}
|
|
1312
|
|
|
1313
|
@Override
|
|
1314
|
public DeleteResult deleteSynonym(Synonym arg0, Taxon arg1, SynonymDeletionConfigurator arg2) {
|
|
1315
|
return defaultService.deleteSynonym(arg0, arg1, arg2);
|
|
1316
|
}
|
|
1317
|
|
|
1318
|
@Override
|
|
1319
|
public List<List<Synonym>> getSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
|
|
1320
|
return defaultService.getSynonymsByHomotypicGroup(taxon, propertyPaths);
|
|
1321
|
}
|
|
1322
|
|
|
1323
|
@Override
|
|
1324
|
public Synonym changeRelatedTaxonToSynonym(Taxon fromTaxon, Taxon toTaxon,
|
|
1325
|
TaxonRelationshipType oldRelationshipType,
|
|
1326
|
SynonymRelationshipType synonymRelationshipType)
|
|
1327
|
throws DataChangeNoRollbackException {
|
|
1328
|
|
|
1329
|
return defaultService.changeRelatedTaxonToSynonym(fromTaxon, toTaxon, oldRelationshipType, synonymRelationshipType);
|
|
1330
|
}
|
|
1331
|
|
|
1332
|
/* (non-Javadoc)
|
|
1333
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1334
|
*/
|
|
1335
|
@Override
|
|
1336
|
public Pager<Taxon> pageAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
|
|
1337
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
1338
|
return defaultService.pageAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1339
|
}
|
|
1340
|
|
|
1341
|
/* (non-Javadoc)
|
|
1342
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1343
|
*/
|
|
1344
|
@Override
|
|
1345
|
public List<Taxon> listAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
|
|
1346
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
1347
|
return defaultService.listAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1348
|
}
|
|
1349
|
|
|
1350
|
@Override
|
|
1351
|
public DeleteResult isDeletable(TaxonBase object,
|
|
1352
|
DeleteConfiguratorBase config) {
|
|
1353
|
// TODO Auto-generated method stub
|
|
1354
|
return null;
|
|
1355
|
}
|
|
1356
|
|
|
1357
|
@Override
|
|
1358
|
public IncludedTaxaDTO listIncludedTaxa(UUID taxonUuid,
|
|
1359
|
IncludedTaxonConfiguration configuration) {
|
|
1360
|
// TODO Auto-generated method stub
|
|
1361
|
return null;
|
|
1362
|
}
|
|
1363
|
|
|
1364
|
@Override
|
|
1365
|
public TaxonBase findWithoutFlush(UUID uuid) {
|
|
1366
|
return defaultService.findWithoutFlush(uuid);
|
|
1367
|
}
|
|
1368
|
|
|
1369
|
/* (non-Javadoc)
|
|
1370
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
|
|
1371
|
*/
|
|
1372
|
@Override
|
|
1373
|
public List<TaxonBase> findTaxaByName(MatchingTaxonConfigurator config) {
|
|
1374
|
return defaultService.findTaxaByName(config);
|
|
1375
|
}
|
|
1376
|
|
|
1377
|
@Override
|
|
1378
|
public <S extends TaxonBase> Pager<FindByIdentifierDTO<S>> findByIdentifier(Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity, Integer pageSize, Integer pageNumber, List<String> propertyPaths){
|
|
1379
|
return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
|
|
1380
|
}
|
|
1381
|
|
|
1382
|
/* (non-Javadoc)
|
|
1383
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByIdentifier(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.DefinedTerm, eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.persistence.query.MatchMode, boolean, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
1384
|
*/
|
|
1385
|
@Override
|
|
1386
|
public <S extends TaxonBase> Pager<FindByIdentifierDTO<S>> findByIdentifier(Class<S> clazz, String identifier,
|
|
1387
|
DefinedTerm identifierType, TaxonNode subtreeFilter, MatchMode matchmode, boolean includeEntity,
|
|
1388
|
Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
1389
|
return defaultService.findByIdentifier(clazz, identifier, identifierType, subtreeFilter, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
|
|
1390
|
}
|
|
1391
|
|
|
1392
|
|
|
1393
|
|
|
1394
|
/* (non-Javadoc)
|
|
1395
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
|
|
1396
|
*/
|
|
1397
|
@Override
|
|
1398
|
public DeleteResult deleteSynonym(UUID synonymUuid, UUID taxonUuid, SynonymDeletionConfigurator config) {
|
|
1399
|
return defaultService.deleteSynonym(synonymUuid, taxonUuid, config);
|
|
1400
|
}
|
|
1401
|
|
|
1402
|
|
|
1403
|
/**
|
|
1404
|
* {@inheritDoc}
|
|
1405
|
|
|
1406
|
*/
|
|
1407
|
@Override
|
|
1408
|
public UpdateResult swapSynonymAndAcceptedTaxon(UUID synonymUUid, UUID acceptedTaxonUuid) {
|
|
1409
|
return defaultService.swapSynonymAndAcceptedTaxon(synonymUUid, acceptedTaxonUuid);
|
|
1410
|
}
|
|
1411
|
|
|
1412
|
/* (non-Javadoc)
|
|
1413
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(java.util.UUID, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, java.util.UUID)
|
|
1414
|
*/
|
|
1415
|
@Override
|
|
1416
|
public DeleteResult deleteTaxon(UUID taxonUuid, TaxonDeletionConfigurator config, UUID classificationUuid) {
|
|
1417
|
return defaultService.deleteTaxon(taxonUuid, config, classificationUuid);
|
|
1418
|
}
|
|
1419
|
|
|
1420
|
|
|
1421
|
@Override
|
|
1422
|
public UpdateResult moveFactualDateToAnotherTaxon(UUID arg0, UUID arg1) {
|
|
1423
|
return defaultService.moveFactualDateToAnotherTaxon(arg0, arg1);
|
|
1424
|
}
|
|
1425
|
|
|
1426
|
|
|
1427
|
/**
|
|
1428
|
* {@inheritDoc}
|
|
1429
|
*/
|
|
1430
|
@Override
|
|
1431
|
public UpdateResult moveSynonymToAnotherTaxon(
|
|
1432
|
SynonymRelationship oldSynonymRelation, UUID newTaxonUUID,
|
|
1433
|
boolean moveHomotypicGroup,
|
|
1434
|
SynonymRelationshipType newSynonymRelationshipType,
|
|
1435
|
Reference reference, String referenceDetail, boolean keepReference)
|
|
1436
|
throws HomotypicalGroupChangeException {
|
|
1437
|
|
|
1438
|
return defaultService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxonUUID, moveHomotypicGroup, newSynonymRelationshipType, reference, referenceDetail, keepReference);
|
|
1439
|
}
|
|
1440
|
|
|
1441
|
|
|
1442
|
/* (non-Javadoc)
|
|
1443
|
* @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.UUID)
|
|
1444
|
*/
|
|
1445
|
@Override
|
|
1446
|
public DeleteResult delete(UUID uuid) {
|
|
1447
|
return defaultService.delete(uuid);
|
|
1448
|
|
|
1449
|
}
|
|
1450
|
|
|
1451
|
/* (non-Javadoc)
|
|
1452
|
* @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.Collection)
|
|
1453
|
*/
|
|
1454
|
@Override
|
|
1455
|
public DeleteResult delete(Collection<UUID> arg0) {
|
|
1456
|
return defaultService.delete(arg0);
|
|
1457
|
}
|
|
1458
|
|
|
1459
|
/* (non-Javadoc)
|
|
1460
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List)
|
|
1461
|
*/
|
|
1462
|
@Override
|
|
1463
|
public List<TaxonBase> merge(List<TaxonBase> arg0) {
|
|
1464
|
return defaultService.merge(arg0);
|
|
1465
|
}
|
|
1466
|
|
|
1467
|
/* (non-Javadoc)
|
|
1468
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
|
|
1469
|
*/
|
|
1470
|
@Override
|
|
1471
|
public DeleteResult deleteSynonym(UUID arg0, SynonymDeletionConfigurator arg1) {
|
|
1472
|
return defaultService.deleteSynonym(arg0, arg1);
|
|
1473
|
}
|
|
1474
|
|
|
1475
|
/* (non-Javadoc)
|
|
1476
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
1477
|
*/
|
|
1478
|
@Override
|
|
1479
|
public UpdateResult changeSynonymToRelatedTaxon(UUID arg0, UUID arg1, TaxonRelationshipType arg2, Reference arg3,
|
|
1480
|
String arg4) {
|
|
1481
|
return defaultService.changeSynonymToRelatedTaxon(arg0, arg1, arg2, arg3, arg4);
|
|
1482
|
}
|
|
1483
|
|
|
1484
|
/* (non-Javadoc)
|
|
1485
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeRelatedTaxonToSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType)
|
|
1486
|
*/
|
|
1487
|
@Override
|
|
1488
|
public UpdateResult changeRelatedTaxonToSynonym(UUID arg0, UUID arg1, TaxonRelationshipType arg2,
|
|
1489
|
SynonymRelationshipType arg3) throws DataChangeNoRollbackException {
|
|
1490
|
return defaultService.changeRelatedTaxonToSynonym(arg0, arg1, arg2, arg3);
|
|
1491
|
|
|
1492
|
}
|
|
1493
|
|
|
1494
|
/* (non-Javadoc)
|
|
1495
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(java.util.UUID, java.util.UUID, java.util.UUID, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
1496
|
*/
|
|
1497
|
@Override
|
|
1498
|
public UpdateResult changeSynonymToAcceptedTaxon(UUID arg0, UUID arg1, UUID arg2, boolean arg3, boolean arg4,
|
|
1499
|
Reference arg5, String arg6) throws HomotypicalGroupChangeException {
|
|
1500
|
return defaultService.changeSynonymToAcceptedTaxon(arg0, arg1, arg2, arg3, arg4, arg5, arg6);
|
|
1501
|
}
|
|
1502
|
|
|
1503
|
/* (non-Javadoc)
|
|
1504
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List, boolean)
|
|
1505
|
*/
|
|
1506
|
@Override
|
|
1507
|
public List<MergeResult<TaxonBase>> merge(List<TaxonBase> arg0, boolean arg1) {
|
|
1508
|
return defaultService.merge(arg0, arg1);
|
|
1509
|
}
|
|
1510
|
|
|
1511
|
/* (non-Javadoc)
|
|
1512
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase, boolean)
|
|
1513
|
*/
|
|
1514
|
@Override
|
|
1515
|
public MergeResult<TaxonBase> merge(TaxonBase arg0, boolean arg1) {
|
|
1516
|
return defaultService.merge(arg0, arg1);
|
|
1517
|
}
|
|
1518
|
|
|
1519
|
/* (non-Javadoc)
|
|
1520
|
* @see eu.etaxonomy.cdm.api.service.IService#loadWithUpdate(java.util.UUID)
|
|
1521
|
*/
|
|
1522
|
@Override
|
|
1523
|
public TaxonBase loadWithUpdate(UUID arg0) {
|
|
1524
|
return defaultService.loadWithUpdate(arg0);
|
|
1525
|
}
|
|
1526
|
|
|
1527
|
/**
|
|
1528
|
* {@inheritDoc}
|
|
1529
|
*/
|
|
1530
|
@Override
|
|
1531
|
public List<TaxonBase> load(List<UUID> arg0, List<String> arg1) {
|
|
1532
|
return defaultService.load(arg0, arg1);
|
|
1533
|
}
|
|
1534
|
|
|
1535
|
@Override
|
|
1536
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCache(
|
|
1537
|
Integer limit, String pattern) {
|
|
1538
|
return defaultService.getUuidAndTitleCache(limit, pattern);
|
|
1539
|
}
|
|
1540
|
|
|
1541
|
@Override
|
|
1542
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheTaxon(
|
|
1543
|
Integer limit, String pattern) {
|
|
1544
|
return defaultService.getUuidAndTitleCacheTaxon(limit, pattern);
|
|
1545
|
}
|
|
1546
|
|
|
1547
|
@Override
|
|
1548
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheSynonym(
|
|
1549
|
Integer limit, String pattern) {
|
|
1550
|
return defaultService.getUuidAndTitleCacheSynonym(limit, pattern);
|
|
1551
|
}
|
|
1552
|
|
|
1553
|
@Override
|
|
1554
|
public List<TaxonBase> loadByIds(List<Integer> idSet, List<String> propertyPaths) {
|
|
1555
|
|
|
1556
|
return defaultService.loadByIds(idSet, propertyPaths);
|
|
1557
|
}
|
|
1558
|
|
|
1559
|
|
|
1560
|
}
|