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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.preference;
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import java.net.URI;
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import org.eclipse.jface.layout.GridLayoutFactory;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.custom.CLabel;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.events.SelectionListener;
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import org.eclipse.swt.layout.GridData;
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import org.eclipse.swt.layout.GridLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Combo;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.swt.widgets.Control;
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import org.eclipse.swt.widgets.Label;
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import eu.etaxonomy.cdm.api.application.ICdmRepository;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.model.metadata.CdmPreference;
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import eu.etaxonomy.cdm.model.metadata.CdmPreference.PrefKey;
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import eu.etaxonomy.cdm.model.metadata.PreferencePredicate;
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import eu.etaxonomy.cdm.model.metadata.PreferenceSubject;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.taxeditor.l10n.Messages;
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import eu.etaxonomy.taxeditor.preference.menu.CdmPreferencePage;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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/**
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* @author k.luther
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* @since 23.03.2018
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*
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*/
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public class AbcdImportPreference extends CdmPreferencePage implements IE4PreferencePage, SelectionListener {
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/**
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*
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*/
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private static final String CATALOGUE_NUMBER = "Catalogue number";
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/**
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*
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*/
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private static final String BARCODE = "Barcode";
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/**
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*
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*/
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private static final String ACCESSION_NUMBER = "Accession number";
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protected Abcd206ImportConfigurator configurator;
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protected Combo nomenclaturalCodeSelectionCombo;
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protected boolean allowOverride = true;
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protected boolean override = true;
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protected CdmPreference preference = null;
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Combo textDNAProviderString;
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private Composite composite;
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Button checkBoxMediaSpecimen;
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Button checkBoxIgnoreExisting;
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Button checkBoxIgnoreAuthorship;
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Combo checkBoxMapUnitId;
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// Button checkBoxMapUnitIdToAccessionNumber;
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// Button checkBoxMapUnitIdToBarcode;
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Button checkBoxRemoveCountry;
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Button checkBoxMoveToDefaultClassification;
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Button checkBoxImportSiblings;
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Button checkBoxAddIndividualsAssociations;
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Button checkBoxReuseDescriptiveGroups;
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Button checkBoxReuseExistingTaxa;
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Combo useLocalOrAdmin;
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@Override
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protected Control createContents(Composite parent) {
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getValues();
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if (!isAdminPreference && !allowOverride){
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Label label = new Label(parent, SWT.NONE);
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label.setText("The CDM settings don't allow to set the abcd import preference locally. If you need to make local settings, please ask an administrator.");
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this.noDefaultAndApplyButton();
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return parent;
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}
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composite = new Composite(parent, SWT.NULL);
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GridLayout gridLayout = new GridLayout();
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composite.setLayout(gridLayout);
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final CLabel description = new CLabel(composite, SWT.NULL);
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description.setText(Messages.AbcdImportPreference_description);
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checkBoxMediaSpecimen = new Button(composite, SWT.CHECK);
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checkBoxMediaSpecimen.setText(Messages.AbcdImportPreference_media_as_mediaSpecimen);
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checkBoxMediaSpecimen
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.setToolTipText(Messages.AbcdImportPreference_media_as_subUnit);
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checkBoxMediaSpecimen.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setAddMediaAsMediaSpecimen(!configurator.isAddMediaAsMediaSpecimen());
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setApply(true);
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}
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});
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checkBoxIgnoreExisting = new Button(composite, SWT.CHECK);
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checkBoxIgnoreExisting.setText(Messages.AbcdImportPreference_not_import_existing_specimen);
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checkBoxIgnoreExisting
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.setToolTipText(Messages.AbcdImportPreference_not_import_existing_specimen_tooltip);
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checkBoxIgnoreExisting.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setIgnoreImportOfExistingSpecimen(!configurator.isIgnoreImportOfExistingSpecimen());
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setApply(true);
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}
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});
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checkBoxIgnoreAuthorship = new Button(composite, SWT.CHECK);
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checkBoxIgnoreAuthorship.setText(Messages.AbcdImportPreference_ignore_author);
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checkBoxIgnoreAuthorship
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.setToolTipText(Messages.AbcdImportPreference_ignore_author_tooltip);
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checkBoxIgnoreAuthorship.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setIgnoreAuthorship(!configurator.isIgnoreAuthorship());
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setApply(true);
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}
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});
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GridData gridData = new GridData();
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gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
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gridData.horizontalIndent = 9;
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gridData.minimumWidth=100;
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// classificationSelection.setLayoutData(gridData);
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Label unitIdLabel = new Label(composite, SWT.NONE);
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unitIdLabel.setText(Messages.AbcdImportPreference_map_unit_nr_catalog_number);
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checkBoxMapUnitId = new Combo(composite, SWT.BORDER| SWT.READ_ONLY);
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checkBoxMapUnitId.setLayoutData(gridData);
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checkBoxMapUnitId.add(ACCESSION_NUMBER);
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checkBoxMapUnitId.add(BARCODE);
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checkBoxMapUnitId.add(CATALOGUE_NUMBER);
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checkBoxMapUnitId
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.setToolTipText(Messages.AbcdImportPreference_map_unit_number_catalog_number_tooltip);
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checkBoxMapUnitId.addSelectionListener(this);
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checkBoxRemoveCountry = new Button(composite, SWT.CHECK);
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checkBoxRemoveCountry.setText(Messages.AbcdImportPreference_remove_country_from_locality);
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checkBoxRemoveCountry
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.setToolTipText(Messages.AbcdImportPreference_remove_country_from_locality_tooltip);
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checkBoxRemoveCountry.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setRemoveCountryFromLocalityText(!configurator.isRemoveCountryFromLocalityText());
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setApply(true);
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}
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});
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checkBoxMoveToDefaultClassification = new Button(composite, SWT.CHECK);
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checkBoxMoveToDefaultClassification.setSelection(configurator.isMoveNewTaxaToDefaultClassification());
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checkBoxMoveToDefaultClassification.setText(Messages.AbcdImportPreference_create_new_classification_new_taxa);
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checkBoxMoveToDefaultClassification
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.setToolTipText(Messages.AbcdImportPreference_create_new_classification_new_taxa_tooltip);
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checkBoxMoveToDefaultClassification.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setMoveNewTaxaToDefaultClassification(!configurator.isMoveNewTaxaToDefaultClassification());
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setApply(true);
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}
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});
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checkBoxImportSiblings = new Button(composite, SWT.CHECK);
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checkBoxImportSiblings.setText(Messages.AbcdImportPreference_import_all_children_for_cultures_or_tissues);
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checkBoxImportSiblings
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.setToolTipText(Messages.AbcdImportPreference_import_all_children_for_cultures_or_tissues_tooltip);
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checkBoxImportSiblings.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setGetSiblings(!configurator.isGetSiblings());
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setApply(true);
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}
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});
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checkBoxAddIndividualsAssociations = new Button(composite, SWT.CHECK);
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checkBoxAddIndividualsAssociations.setText(Messages.AbcdImportPreference_create_Individual_Association);
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checkBoxAddIndividualsAssociations
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.setToolTipText(Messages.AbcdImportPreference_create_Individual_Association_tooltip);
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checkBoxAddIndividualsAssociations.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(!configurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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setApply(true);
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}
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});
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checkBoxReuseDescriptiveGroups = new Button(composite, SWT.CHECK);
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checkBoxReuseDescriptiveGroups.setText(Messages.AbcdImportPreference_reuse_descriptive_group);
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checkBoxReuseDescriptiveGroups
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.setToolTipText(Messages.AbcdImportPreference_reuse_descriptive_group_tooltip);
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checkBoxReuseDescriptiveGroups.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setReuseExistingDescriptiveGroups(!configurator.isReuseExistingDescriptiveGroups());
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setApply(true);
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}
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});
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checkBoxReuseExistingTaxa = new Button(composite, SWT.CHECK);
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checkBoxReuseExistingTaxa.setText(Messages.AbcdImportPreference_reuse_existing_taxa);
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checkBoxReuseExistingTaxa
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.setToolTipText(Messages.AbcdImportPreference_reuse_existing_taxa_tooltip);
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checkBoxReuseExistingTaxa.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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configurator.setReuseExistingTaxaWhenPossible(!configurator.isReuseExistingTaxaWhenPossible());
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setApply(true);
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}
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});
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GridData sepGrid = createTextGridData();
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Label separator = new Label(composite, SWT.HORIZONTAL|SWT.SEPARATOR);
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separator.setLayoutData(sepGrid);
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separator.setVisible(false);
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Label labelRef = new Label(composite, SWT.NONE);
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labelRef.setText("Biocase provider for associated DNA");
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textDNAProviderString = new Combo(composite, SWT.BORDER);
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gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
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gridData.horizontalIndent = 9;
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gridData.minimumWidth=200;
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textDNAProviderString.setLayoutData(gridData);
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GridLayoutFactory.fillDefaults();
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String biocaseProvider = null;
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CdmPreference pref = null;
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pref = PreferencesUtil.getPreferenceFromDB(PreferencePredicate.BioCaseProvider);
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biocaseProvider = pref!= null? pref.getValue():null;
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if (!isAdminPreference && ((pref != null && pref.isAllowOverride()) || pref == null) ){
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biocaseProvider = PreferencesUtil.getStringValue(PreferencePredicate.BioCaseProvider.getKey(), true);
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}
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if (biocaseProvider != null){
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String items[] = biocaseProvider.split(";");
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textDNAProviderString.setItems(items);
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}
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textDNAProviderString.setEnabled(true);
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// textDNAProviderString.setLayoutData(new GridData(SWT.FILL, SWT.TOP, true, true, 1, 1));
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textDNAProviderString.addSelectionListener(this);
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Label nomenclaturalCodeLabel = new Label(composite, SWT.NONE);
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nomenclaturalCodeLabel.setText("Nomenclatural Code");
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nomenclaturalCodeSelectionCombo = new Combo(composite, SWT.BORDER| SWT.READ_ONLY);
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gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
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gridData.horizontalIndent = 9;
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nomenclaturalCodeSelectionCombo.setLayoutData(gridData);
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GridLayoutFactory.fillDefaults();
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for(NomenclaturalCode code: NomenclaturalCode.values()){
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nomenclaturalCodeSelectionCombo.add(code.getKey());
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}
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nomenclaturalCodeSelectionCombo.addSelectionListener(this);
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if (preference != null){
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allowOverride = preference.isAllowOverride();
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}
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Label sep = new Label(composite, SWT.HORIZONTAL|SWT.SEPARATOR);
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sep.setLayoutData(new GridData(SWT.DEFAULT, SWT.DEFAULT, true, false));
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GridLayoutFactory.fillDefaults();
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useLocalOrAdmin = new Combo(parent, SWT.BORDER | SWT.READ_ONLY);
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if (!isAdminPreference){
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useLocalOrAdmin.add(LocalOrDefaultEnum.Default.getLabel(), 0);
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useLocalOrAdmin.add(LocalOrDefaultEnum.Local.getLabel(), 1);
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}else{
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useLocalOrAdmin.add(LocalOrDefaultEnum.AllowOverride.getLabel(), 0);
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useLocalOrAdmin.add(LocalOrDefaultEnum.Database.getLabel(), 1);
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}
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if (!isAdminPreference){
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if (override && allowOverride){
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useLocalOrAdmin.select(1);
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}else{
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useLocalOrAdmin.select(0);
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composite.setEnabled(false);
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}
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}else{
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if (allowOverride){
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useLocalOrAdmin.select(0);
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}else{
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useLocalOrAdmin.select(1);
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}
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}
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useLocalOrAdmin.addSelectionListener(this);
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if (!allowOverride && !isAdminPreference){
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useLocalOrAdmin.setEnabled(false);
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}
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GridData gridDataLocal = new GridData();
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gridDataLocal = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
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// gridDataLocal.horizontalIndent = 9;
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gridDataLocal.minimumWidth=100;
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gridDataLocal.widthHint= nomenclaturalCodeSelectionCombo.getBorderWidth();
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useLocalOrAdmin.setLayoutData(gridDataLocal);
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GridLayoutFactory.fillDefaults();
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setSelections();
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return composite;
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}
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@Override
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public void widgetSelected(SelectionEvent e) {
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if (e.getSource().equals(nomenclaturalCodeSelectionCombo)){
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this.configurator.setNomenclaturalCode(NomenclaturalCode.getByKey(nomenclaturalCodeSelectionCombo.getText()));
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}
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if (e.getSource().equals(checkBoxMapUnitId)){
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String text = checkBoxMapUnitId.getText();
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if (text.equals(ACCESSION_NUMBER)){
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this.configurator.setMapUnitIdToAccessionNumber(true);
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this.configurator.setMapUnitIdToBarcode(false);
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this.configurator.setMapUnitIdToCatalogNumber(false);
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}else if (text.equals(BARCODE)){
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this.configurator.setMapUnitIdToAccessionNumber(false);
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this.configurator.setMapUnitIdToBarcode(true);
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this.configurator.setMapUnitIdToCatalogNumber(false);
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}else{
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this.configurator.setMapUnitIdToAccessionNumber(false);
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this.configurator.setMapUnitIdToBarcode(false);
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344
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this.configurator.setMapUnitIdToCatalogNumber(true);
|
|
345
|
}
|
|
346
|
}
|
|
347
|
if (e.getSource().equals(useLocalOrAdmin)){
|
|
348
|
if (useLocalOrAdmin.getText().equals(LocalOrDefaultEnum.Default.getLabel()) || useLocalOrAdmin.getText().equals(LocalOrDefaultEnum.Database.getLabel())){
|
|
349
|
composite.setEnabled(false);
|
|
350
|
PreferencesUtil.extractAbcdConfiguratorFromPreferenceString(configurator, preference.getValue());
|
|
351
|
setSelections();
|
|
352
|
|
|
353
|
if (isAdminPreference){
|
|
354
|
allowOverride = false;
|
|
355
|
}else{
|
|
356
|
override = false;
|
|
357
|
}
|
|
358
|
}else{
|
|
359
|
composite.setEnabled(true);
|
|
360
|
if (isAdminPreference){
|
|
361
|
allowOverride = true;
|
|
362
|
}else{
|
|
363
|
override = true;
|
|
364
|
}
|
|
365
|
}
|
|
366
|
}
|
|
367
|
|
|
368
|
if (e.getSource().equals(textDNAProviderString)){
|
|
369
|
String textDnaProvider = textDNAProviderString.getText();
|
|
370
|
try{
|
|
371
|
this.configurator.setDnaSoure(URI.create(textDnaProvider));
|
|
372
|
}catch(IllegalArgumentException iae){
|
|
373
|
//do not set as dna source
|
|
374
|
}
|
|
375
|
}
|
|
376
|
this.setApply(true);
|
|
377
|
|
|
378
|
|
|
379
|
// PreferencesUtil.recursiveSetEnabled(composite, override);
|
|
380
|
setApply(true);
|
|
381
|
|
|
382
|
}
|
|
383
|
|
|
384
|
@Override
|
|
385
|
public boolean performOk() {
|
|
386
|
if (!isApply()){
|
|
387
|
return true;
|
|
388
|
}
|
|
389
|
if (configurator != null){
|
|
390
|
try{
|
|
391
|
configurator.setDnaSoure(URI.create(textDNAProviderString.getText()));
|
|
392
|
}catch(IllegalArgumentException e){
|
|
393
|
//dna provider is not an uri
|
|
394
|
}
|
|
395
|
String configString = configurator.toString();
|
|
396
|
|
|
397
|
|
|
398
|
if (override){
|
|
399
|
PreferencesUtil.setStringValue(PreferencePredicate.AbcdImportConfig.getKey(), configString);
|
|
400
|
PreferencesUtil.setBooleanValue( PreferencesUtil.prefOverrideKey(PreferencePredicate.AbcdImportConfig.getKey()), override);
|
|
401
|
|
|
402
|
}else{
|
|
403
|
PreferencesUtil.setBooleanValue( PreferencesUtil.prefOverrideKey(PreferencePredicate.AbcdImportConfig.getKey()), override);
|
|
404
|
}
|
|
405
|
PreferencesUtil.setStringValue(IPreferenceKeys.LAST_USED_ABCD_CONFIG, "");
|
|
406
|
|
|
407
|
|
|
408
|
}
|
|
409
|
return true;
|
|
410
|
}
|
|
411
|
|
|
412
|
/**
|
|
413
|
* {@inheritDoc}
|
|
414
|
*/
|
|
415
|
@Override
|
|
416
|
public void widgetDefaultSelected(SelectionEvent e) {
|
|
417
|
// TODO Auto-generated method stub
|
|
418
|
|
|
419
|
}
|
|
420
|
|
|
421
|
@Override
|
|
422
|
protected void performDefaults() {
|
|
423
|
configurator = Abcd206ImportConfigurator.NewInstance(null,null);
|
|
424
|
configurator.setNomenclaturalCode(PreferencesUtil.getPreferredNomenclaturalCode());
|
|
425
|
override = false;
|
|
426
|
setSelections();
|
|
427
|
setApply(true);
|
|
428
|
}
|
|
429
|
|
|
430
|
@Override
|
|
431
|
public void getValues() {
|
|
432
|
isAdminPreference = false;
|
|
433
|
configurator = Abcd206ImportConfigurator.NewInstance(null,null);
|
|
434
|
ICdmRepository controller;
|
|
435
|
controller = CdmStore.getCurrentApplicationConfiguration();
|
|
436
|
PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewTaxEditorInstance(), PreferencePredicate.AbcdImportConfig);
|
|
437
|
preference = controller.getPreferenceService().find(key);
|
|
438
|
|
|
439
|
if (preference != null ){
|
|
440
|
allowOverride = preference.isAllowOverride();
|
|
441
|
}else{
|
|
442
|
preference = CdmPreference.NewTaxEditorInstance(PreferencePredicate.AbcdImportConfig, configurator.toString());
|
|
443
|
}
|
|
444
|
|
|
445
|
override = PreferencesUtil.getBooleanValue(
|
|
446
|
PreferencesUtil.prefOverrideKey(PreferencePredicate.AbcdImportConfig.getKey()), true) != null? PreferencesUtil.getBooleanValue(
|
|
447
|
PreferencesUtil.prefOverrideKey(PreferencePredicate.AbcdImportConfig.getKey()), true):false;
|
|
448
|
if (allowOverride && override){
|
|
449
|
String configString = PreferencesUtil.getStringValue(PreferencePredicate.AbcdImportConfig.getKey(), true);
|
|
450
|
configurator = Abcd206ImportConfigurator.NewInstance(null, null);
|
|
451
|
PreferencesUtil.extractAbcdConfiguratorFromPreferenceString(configurator, configString);
|
|
452
|
}else{
|
|
453
|
PreferencesUtil.extractAbcdConfiguratorFromPreferenceString(configurator, preference.getValue());
|
|
454
|
}
|
|
455
|
}
|
|
456
|
|
|
457
|
protected void setSelections(){
|
|
458
|
checkBoxMediaSpecimen.setSelection(configurator.isAddMediaAsMediaSpecimen());
|
|
459
|
checkBoxIgnoreExisting.setSelection(configurator.isIgnoreImportOfExistingSpecimen());
|
|
460
|
checkBoxIgnoreAuthorship.setSelection(configurator.isIgnoreAuthorship());
|
|
461
|
if (configurator.isMapUnitIdToAccessionNumber()){
|
|
462
|
checkBoxMapUnitId.select(0);
|
|
463
|
}else if (configurator.isMapUnitIdToBarcode()){
|
|
464
|
checkBoxMapUnitId.select(1);
|
|
465
|
}else{
|
|
466
|
checkBoxMapUnitId.select(2);
|
|
467
|
}
|
|
468
|
|
|
469
|
|
|
470
|
checkBoxRemoveCountry.setSelection(configurator.isRemoveCountryFromLocalityText());
|
|
471
|
checkBoxImportSiblings.setSelection(configurator.isGetSiblings());
|
|
472
|
checkBoxAddIndividualsAssociations.setSelection(configurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
|
|
473
|
checkBoxReuseDescriptiveGroups.setSelection(configurator.isReuseExistingDescriptiveGroups());
|
|
474
|
checkBoxReuseExistingTaxa.setSelection(configurator.isReuseExistingTaxaWhenPossible());
|
|
475
|
|
|
476
|
textDNAProviderString.setText(configurator.getDnaSoure()!= null? configurator.getDnaSoure().toString():"");
|
|
477
|
int index = 0;
|
|
478
|
if (configurator.getNomenclaturalCode() != null){
|
|
479
|
for (String label : nomenclaturalCodeSelectionCombo.getItems()){
|
|
480
|
if (label.equals(configurator.getNomenclaturalCode().getKey())){
|
|
481
|
nomenclaturalCodeSelectionCombo.select(index);
|
|
482
|
}
|
|
483
|
index++;
|
|
484
|
}
|
|
485
|
}else{
|
|
486
|
for (String label : nomenclaturalCodeSelectionCombo.getItems()){
|
|
487
|
NomenclaturalCode code = PreferencesUtil.getPreferredNomenclaturalCode();
|
|
488
|
if (label.equals(code.getKey())){
|
|
489
|
nomenclaturalCodeSelectionCombo.select(index);
|
|
490
|
configurator.setNomenclaturalCode(code);
|
|
491
|
}
|
|
492
|
index++;
|
|
493
|
}
|
|
494
|
|
|
495
|
}
|
|
496
|
|
|
497
|
}
|
|
498
|
|
|
499
|
}
|