Revision cc5f03e7
Added by Patrick Plitzner almost 7 years ago
eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF | ||
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org.eclipse.e4.ui.di |
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Bundle-RequiredExecutionEnvironment: JavaSE-1.8 |
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Bundle-ActivationPolicy: lazy |
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Import-Package: javax.inject;version="1.0.0", |
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Import-Package: javax.annotation;version="1.0.0";resolution:=optional, |
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javax.inject;version="1.0.0", |
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org.eclipse.core.databinding.beans, |
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org.eclipse.core.databinding.observable.list, |
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org.eclipse.core.databinding.observable.map, |
eu.etaxonomy.taxeditor.editor/fragment.e4xmi | ||
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<children xsi:type="menu:HandledMenuItem" xmi:id="_wg0-oDulEeeOtqC_3qh40A" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.commandlabel54" label="%command.label.54" iconURI="platform:/plugin/eu.etaxonomy.taxeditor.editor/icons/deep-delete-16x16-32.png" command="_fKT-wDulEeeOtqC_3qh40A"/> |
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</menus> |
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</elements> |
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<elements xsi:type="basic:PartDescriptor" xmi:id="_R7vxEECaEeeL5JDzMOYK6g" elementId="eu.etaxonomy.taxeditor.editor.workingSet.FeatureTreeBuilderViewPart" label="FeatureTreeBuilder" contributionURI="bundleclass://eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.workingSet.FeatureTreeBuilderViewPart"/> |
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</fragments> |
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<fragments xsi:type="fragment:StringModelFragment" xmi:id="__mwtMDVpEee_b7RlBzTDRw" featurename="commands" parentElementId="xpath:/"> |
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<elements xsi:type="commands:Command" xmi:id="_BjF3ADVqEee_b7RlBzTDRw" elementId="eu.etaxonomy.taxeditor.editor.command.specimeneditor.create_field_unit" commandName="%command.commandname.1"/> |
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/workingSet/FeatureTreeBuilderViewPart.java | ||
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// $Id$ |
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/** |
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* Copyright (C) 2017 EDIT |
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.taxeditor.editor.workingSet; |
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import java.math.BigInteger; |
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import java.util.ArrayList; |
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import java.util.HashMap; |
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import java.util.List; |
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import java.util.Map; |
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import javax.annotation.PostConstruct; |
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import javax.annotation.PreDestroy; |
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import org.bgbm.prometheus.xml.NEWQUALITATIVEPROPERTY; |
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import org.bgbm.prometheus.xml.ONTOLOGYDETAILS; |
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import org.bgbm.prometheus.xml.STRUCTURETERM; |
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import org.bgbm.prometheus.xml.Structure; |
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import org.bgbm.prometheus.xml.TYPETERM; |
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import org.eclipse.e4.ui.di.Focus; |
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import org.eclipse.jface.viewers.TreeViewer; |
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import org.eclipse.swt.SWT; |
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import org.eclipse.swt.widgets.Composite; |
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import org.eclipse.swt.widgets.Tree; |
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import org.eclipse.ui.forms.widgets.TableWrapData; |
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import org.eclipse.ui.forms.widgets.TableWrapLayout; |
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/** |
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* @author pplitzner |
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* @date 24.05.2017 |
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* |
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*/ |
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public class FeatureTreeBuilderViewPart { |
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private Tree treeStructures; |
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private Tree treeProperties; |
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private Tree treeCharacters; |
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private TreeViewer treeViewerCharacters; |
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private TreeViewer treeViewerProperties; |
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private TreeViewer treeViewerStructures; |
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public FeatureTreeBuilderViewPart() { |
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ontology = PrometheusOntology.createOntology(); |
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createIndex(ontology); |
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} |
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/** |
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* Create contents of the view part. |
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*/ |
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@PostConstruct |
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public void createControls(Composite parent) { |
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{ |
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TableWrapLayout twl_parent = new TableWrapLayout(); |
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twl_parent.numColumns = 3; |
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parent.setLayout(twl_parent); |
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} |
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treeViewerStructures = new TreeViewer(parent, SWT.BORDER); |
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treeViewerStructures.setColumnProperties(new String[] {}); |
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treeStructures = treeViewerStructures.getTree(); |
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treeStructures.setLayoutData(new TableWrapData(TableWrapData.FILL_GRAB, TableWrapData.FILL_GRAB, 1, 1)); |
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treeViewerProperties = new TreeViewer(parent, SWT.BORDER); |
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treeProperties = treeViewerProperties.getTree(); |
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treeProperties.setLayoutData(new TableWrapData(TableWrapData.FILL_GRAB, TableWrapData.FILL_GRAB, 1, 1)); |
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treeViewerCharacters = new TreeViewer(parent, SWT.BORDER); |
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treeCharacters = treeViewerCharacters.getTree(); |
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treeCharacters.setLayoutData(new TableWrapData(TableWrapData.FILL_GRAB, TableWrapData.FILL_GRAB, 1, 1)); |
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init(); |
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} |
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private void init(){ |
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treeViewerStructures.setContentProvider(new StructureContenProvider(this)); |
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treeViewerStructures.setLabelProvider(new StructureLabelProvider(this)); |
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treeViewerStructures.setInput(""); |
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} |
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@PreDestroy |
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public void dispose() { |
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} |
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@Focus |
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public void setFocus() { |
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// TODO Set the focus to control |
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} |
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public TreeViewer getTreeViewerCharacters() { |
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return treeViewerCharacters; |
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} |
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public TreeViewer getTreeViewerProperties() { |
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return treeViewerProperties; |
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} |
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public TreeViewer getTreeViewerStructures() { |
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return treeViewerStructures; |
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} |
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private final Map<String, List<String>> taxonToCharacterListMap = new HashMap<>(); |
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private final Map<BigInteger, STRUCTURETERM> structureTermMap = new HashMap<>(); |
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private final Map<BigInteger, TYPETERM> typeTermMap = new HashMap<>(); |
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private final Map<BigInteger, NEWQUALITATIVEPROPERTY> qualPropertyTermMap = new HashMap<>(); |
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private final Map<BigInteger, List<BigInteger>> structureTermToQualPropertyMap = new HashMap<>(); |
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private ONTOLOGYDETAILS ontology; |
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private void createIndex(ONTOLOGYDETAILS ontology){ |
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//structures |
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List<STRUCTURETERM> terms = ontology.getONTOLOGYDETAILSBody().getTERMS().getSTRUCTURETERMS().getSTRUCTURETERM(); |
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terms.forEach((STRUCTURETERM structureTerm) -> structureTermMap.put(structureTerm.getGLOBALID(), structureTerm)); |
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//type terms |
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List<TYPETERM> typeTerms = ontology.getONTOLOGYDETAILSBody().getTERMS().getTYPEOFSTRUCTURETERMS().getTYPETERM(); |
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typeTerms.forEach((TYPETERM typeterm) -> typeTermMap.put(typeterm.getGLOBALID(), typeterm)); |
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//properties |
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List<NEWQUALITATIVEPROPERTY> qualProperties = ontology.getONTOLOGYDETAILSBody().getNewQualitativeProperties().getNEWQUALITATIVEPROPERTY(); |
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qualProperties.forEach((NEWQUALITATIVEPROPERTY newqualitativeproperty) -> |
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{ |
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BigInteger id = newqualitativeproperty.getIDSEQ(); |
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qualPropertyTermMap.put(id, newqualitativeproperty); |
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List<Structure> structures = newqualitativeproperty.getStructuresLinkedToProperty().getStructure(); |
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structures.forEach((Structure structure) -> |
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{ |
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List<BigInteger> properties = structureTermToQualPropertyMap.get(structure.getRefID()); |
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if(properties==null){ |
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properties = new ArrayList<>(); |
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} |
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properties.add(id); |
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structureTermToQualPropertyMap.put(structure.getRefID(), properties); |
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}); |
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}); |
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} |
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/** |
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* @return the ontology |
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*/ |
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public ONTOLOGYDETAILS getOntology() { |
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return ontology; |
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} |
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public Map<BigInteger, STRUCTURETERM> getStructureTermMap() { |
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return structureTermMap; |
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} |
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} |
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/workingSet/PrometheusOntology.java | ||
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package eu.etaxonomy.taxeditor.editor.workingSet; |
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import java.io.File; |
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import java.io.IOException; |
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import java.net.URISyntaxException; |
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import java.net.URL; |
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import javax.xml.bind.JAXBContext; |
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import javax.xml.bind.JAXBException; |
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import javax.xml.bind.Unmarshaller; |
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import org.bgbm.prometheus.xml.ONTOLOGYDETAILS; |
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import org.bgbm.prometheus.xml.TreeNode; |
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import org.eclipse.core.runtime.FileLocator; |
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import org.eclipse.core.runtime.Path; |
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import org.eclipse.core.runtime.Platform; |
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public class PrometheusOntology { |
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public static ONTOLOGYDETAILS createOntology() { |
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try { |
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URL url = null; |
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URL iconUrl = FileLocator.find(Platform.getBundle("eu.etaxonomy.taxeditor.editor"), new Path("icons/Ontology.xml"), null); |
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// URL url = PrometheusOntology.class.getResource("Ontology.xml"); |
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File file = null; |
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try { |
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file = new File(FileLocator.resolve(iconUrl).toURI()); |
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} catch (URISyntaxException | IOException e) { |
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// TODO Auto-generated catch block |
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e.printStackTrace(); |
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} |
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JAXBContext jaxbContext = JAXBContext.newInstance(ONTOLOGYDETAILS.class, TreeNode.class); |
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Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller(); |
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ONTOLOGYDETAILS unmarshal = (ONTOLOGYDETAILS) jaxbUnmarshaller.unmarshal(file); |
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return unmarshal; |
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} catch (JAXBException e) { |
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e.printStackTrace(); |
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} |
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return null; |
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} |
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public static void main(String[] args) { |
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createOntology(); |
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} |
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} |
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/workingSet/StructureContenProvider.java | ||
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// $Id$ |
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/** |
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* Copyright (C) 2017 EDIT |
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.taxeditor.editor.workingSet; |
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import java.util.Collections; |
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import org.bgbm.prometheus.xml.TreeNode; |
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import org.eclipse.jface.viewers.ITreeContentProvider; |
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/** |
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* @author pplitzner |
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* @date 24.05.2017 |
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* |
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*/ |
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public class StructureContenProvider implements ITreeContentProvider { |
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private TreeNode rootStructure; |
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private FeatureTreeBuilderViewPart part; |
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public StructureContenProvider(FeatureTreeBuilderViewPart part) { |
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this.part = part; |
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rootStructure = part.getOntology().getONTOLOGYDETAILSBody().getONTOLOGYTREE().getTreeNode(); |
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} |
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/** |
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* {@inheritDoc} |
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*/ |
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@Override |
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public Object[] getElements(Object inputElement) { |
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return Collections.singleton(rootStructure).toArray(); |
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} |
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/** |
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* {@inheritDoc} |
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*/ |
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@Override |
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public Object[] getChildren(Object parentElement) { |
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TreeNode node = (TreeNode) parentElement; |
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return node.getTreeNode().toArray(); |
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} |
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/** |
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* {@inheritDoc} |
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*/ |
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@Override |
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public Object getParent(Object element) { |
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return null; |
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} |
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/** |
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* {@inheritDoc} |
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*/ |
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@Override |
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public boolean hasChildren(Object element) { |
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return !((TreeNode) element).getTreeNode().isEmpty(); |
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} |
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} |
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/workingSet/StructureLabelProvider.java | ||
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// $Id$ |
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/** |
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* Copyright (C) 2017 EDIT |
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.taxeditor.editor.workingSet; |
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import org.bgbm.prometheus.xml.TreeNode; |
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import org.eclipse.jface.viewers.ColumnLabelProvider; |
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/** |
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* @author pplitzner |
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* @date 24.05.2017 |
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* |
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*/ |
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public class StructureLabelProvider extends ColumnLabelProvider { |
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private FeatureTreeBuilderViewPart part; |
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public StructureLabelProvider( FeatureTreeBuilderViewPart part) { |
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this.part = part; |
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} |
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/** |
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* {@inheritDoc} |
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*/ |
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@Override |
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public String getText(Object element) { |
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return part.getStructureTermMap().get(((TreeNode)element).getTermID()).getTerm(); |
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} |
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} |
eu.etaxonomy.taxeditor.editor/src/main/java/org/bgbm/prometheus/.gitignore | ||
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/xml/ |
Also available in: Unified diff
Initial commit of prototype view