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// $Id$
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/**
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* Copyright (C) 2011 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.view.detail;
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import java.util.Set;
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import org.eclipse.jface.viewers.ISelection;
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import org.eclipse.jface.viewers.SelectionChangedEvent;
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import org.eclipse.jface.viewers.TreeNode;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.ui.forms.widgets.ExpandableComposite;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.Group;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.common.User;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SingleRead;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
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import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
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import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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import eu.etaxonomy.taxeditor.store.UsageTermCollection;
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import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
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import eu.etaxonomy.taxeditor.ui.element.RootElement;
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import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
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import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
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import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.identifier.IdentifierDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
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import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
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import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
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import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
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/**
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*
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* The DetailsViewer handles the content of the details view (
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* {@link DetailsViewPart}).<br>
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* Depending on the type of the selected element the section of the details view
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* are created.
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*
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* @author n.hoffmann
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* @created Feb 12, 2010
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* @version 1.0
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*/
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public class DetailsViewer extends AbstractCdmDataViewer {
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private ISelection selection;
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public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
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super(parent, viewPart);
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}
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// START HACK TO MAKE THE DERIVED UNIT FACADE WORK
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// since we are getting implementations of DerivedUnitBase from the bulk
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// editor
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// and not derived unit facade objects,
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@Override
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public void setInput(Object input) {
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if(input instanceof TreeNode){
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input = ((TreeNode) input).getValue();
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}
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if(input instanceof GbifResponse){
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input = ((GbifResponse) input).getDerivedUnitFacade();
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}
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if (input.getClass().equals(DerivedUnit.class)) {
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DerivedUnit derivedUnit = (DerivedUnit)input;
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try {
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input = DerivedUnitFacade.NewInstance(derivedUnit,
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PreferencesUtil.getDerivedUnitConfigurator());
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} catch (DerivedUnitFacadeNotSupportedException e) {
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// MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
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}
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}
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else if(input instanceof FieldUnit){
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input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
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}
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super.setInput(input);
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}
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@Override
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protected void markViewPartDirty() {
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if (getInput() instanceof DerivedUnitFacade) {
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DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
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if(facade.innerDerivedUnit()!=null){
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getViewPart().changed(facade.innerDerivedUnit());
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}
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else if(facade.innerFieldUnit()!=null){
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getViewPart().changed(facade.innerFieldUnit());
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}
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}
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else{
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super.markViewPartDirty();
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}
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}
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// END HACK TO MAKE THE DERIVED UNIT FACADE WORK
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/** {@inheritDoc} */
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@Override
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protected void showParts() {
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// FIXME (CM) : Need to clean out this code.
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// Too much type checking to decide which detail view to display.
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// Need to build in a mechanism where navigators / editors are 'aware'
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// of the corresponding detail viewer.
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Object input = getInput();
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destroySections();
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if (input instanceof TaxonBase) {
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if(((TaxonBase) input).getName()==null){
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createEmptySection(rootElement);
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}
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else{
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createTaxonSections(rootElement);
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}
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} else if (input instanceof NonViralName) {
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createNameSections(rootElement);
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} else if (input instanceof Reference) {
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createReferenceSections(rootElement);
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} else if (input instanceof Team) {
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createTeamDetailSection(rootElement);
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} else if (input instanceof Person) {
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createPersonDetailSection(rootElement);
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} else if (input instanceof TeamOrPersonBase) {
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createTeamOrPersonBaseDetailSection(rootElement);
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} else if (input instanceof DescriptionBase) {
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if(input instanceof SpecimenDescription){
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//TODO: add more sections to DetailsView for SpecimenDescription
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createSpecimenDescriptionSection(rootElement);
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}
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else{
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Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
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Boolean isUseDescription = false;
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for (Marker marker : descriptionMarkers) {
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if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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isUseDescription = true;
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}
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}
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if (((DescriptionBase<?>) input).isImageGallery()) {
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createImageGallerySection(rootElement);
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} else if (isUseDescription) {
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createUseDescriptionSection(rootElement);
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} else {
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createDescriptionSection(rootElement);
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}
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}
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} else if (input instanceof DescriptionElementBase) {
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Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
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Boolean isUseDescription = false;
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for (Marker marker : descriptionMarkers) {
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if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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isUseDescription = true;
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}
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}
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if (isUseDescription == true && input instanceof CategoricalData) {
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createUseRecordSection(rootElement);
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} else {
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createDescriptionElementSection(rootElement);
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}
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} else if (input instanceof Media) {
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createMediaElementSection(rootElement);
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} else if (input instanceof DerivedUnitFacade) {
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if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
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if(((DerivedUnitFacade) input).innerFieldUnit()==null){
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MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
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}
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else{
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createFieldUnitSection(rootElement);
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}
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}
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else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
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if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
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MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
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}
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else{
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createDerivedUnitBaseElementSection(rootElement);
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}
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}
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else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
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//TissueSample should only be created by using it's own class
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//in future using only one class with different SpecimenOrObservationTypes is desired
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// createTissueSampleSection(rootElement);
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}
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else{
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createDerivedUnitBaseElementSection(rootElement);
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}
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} else if (input instanceof DnaSample){
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DnaSample dnaSample = (DnaSample)input;
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if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
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createTissueSampleSection(rootElement);
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}
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else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
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createDnaSampleSection(rootElement);
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}
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} else if (input instanceof MediaSpecimen){
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createMediaSpecimenSection(rootElement);
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}
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else if(input instanceof Sequence){
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createSequenceSection(rootElement);
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}
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else if(input instanceof SingleRead){
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createSingleReadSection(rootElement);
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}
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else if (input instanceof FeatureNodeContainer) {
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createFeatureDistributionSection(rootElement);
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}else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
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createPolytomousKeyNodeSection(rootElement);
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} else if (input instanceof User) {
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createUserSection(rootElement);
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} else if (input instanceof Group) {
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createGroupSection(rootElement);
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} else if (input instanceof TaxonRelationship) {
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createTaxonRelationshipSection(rootElement);
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} else if (input instanceof TermVocabulary) {
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createTermVocabularySection(rootElement);
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} else if (input instanceof DefinedTermBase) {
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createDefinedTermSection(rootElement);
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}
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else {
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createEmptySection(rootElement);
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}
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layout();
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}
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325
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private void createEmptySection(RootElement parent) {
|
|
326
|
destroySections();
|
|
327
|
|
|
328
|
EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
|
|
329
|
|
|
330
|
addPart(emptySection);
|
|
331
|
}
|
|
332
|
|
|
333
|
private void createGroupSection(RootElement parent) {
|
|
334
|
destroySections();
|
|
335
|
|
|
336
|
GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
|
|
337
|
MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
338
|
GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
339
|
|
|
340
|
addPart(groupDetailSection);
|
|
341
|
addPart(memberDetailSection);
|
|
342
|
addPart(grantedAuthorityDetailSection);
|
|
343
|
}
|
|
344
|
|
|
345
|
/** {@inheritDoc} */
|
|
346
|
@Override
|
|
347
|
public ISelection getSelection() {
|
|
348
|
return selection;
|
|
349
|
}
|
|
350
|
|
|
351
|
/** {@inheritDoc} */
|
|
352
|
@Override
|
|
353
|
public void setSelection(ISelection selection, boolean reveal) {
|
|
354
|
this.selection = selection;
|
|
355
|
if(this.selection!=null){
|
|
356
|
SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
|
|
357
|
fireSelectionChanged(selectionChangedEvent);
|
|
358
|
}
|
|
359
|
}
|
|
360
|
|
|
361
|
private void createTaxonSections(RootElement parent) {
|
|
362
|
destroySections();
|
|
363
|
|
|
364
|
ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
|
|
365
|
ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
|
|
366
|
|
|
367
|
TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
|
|
368
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
369
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
370
|
|
|
371
|
NonViralNameDetailSection nonViralNameSection = formFactory
|
|
372
|
.createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
|
|
373
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
374
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
375
|
|
|
376
|
NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
|
|
377
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
378
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
379
|
|
|
380
|
NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
|
|
381
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
382
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
383
|
|
|
384
|
//TODO RL
|
|
385
|
if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
|
|
386
|
ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
387
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
388
|
|
|
389
|
TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
390
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
391
|
|
|
392
|
NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
393
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
394
|
|
|
395
|
addPart(protologSection);
|
|
396
|
addPart(typeDesignationSection);
|
|
397
|
addPart(nameRelationshipSection);
|
|
398
|
}
|
|
399
|
|
|
400
|
addPart(parsingMessagesSection);
|
|
401
|
addPart(taxonBaseDetailSection);
|
|
402
|
addPart(nonViralNameSection);
|
|
403
|
addPart(nomenclaturalStatusSection);
|
|
404
|
addPart(referenceDetailSection);
|
|
405
|
}
|
|
406
|
|
|
407
|
private void createNameSections(RootElement parent) {
|
|
408
|
destroySections();
|
|
409
|
NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
|
|
410
|
getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
|
|
411
|
| ExpandableComposite.EXPANDED);
|
|
412
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
413
|
|
|
414
|
NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
|
|
415
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
416
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
417
|
|
|
418
|
NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
|
|
419
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
420
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
421
|
|
|
422
|
addPart(nonViralNameSection);
|
|
423
|
addPart(nomenclaturalStatusSection);
|
|
424
|
addPart(referenceDetailSection);
|
|
425
|
//TODO RL
|
|
426
|
if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
|
|
427
|
ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
428
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
429
|
|
|
430
|
TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
431
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
432
|
|
|
433
|
NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
434
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
435
|
addPart(protologSection);
|
|
436
|
addPart(typeDesignationSection);
|
|
437
|
addPart(nameRelationshipSection);
|
|
438
|
}
|
|
439
|
}
|
|
440
|
|
|
441
|
private void createReferenceSections(RootElement parent) {
|
|
442
|
destroySections();
|
|
443
|
|
|
444
|
ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
|
|
445
|
ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
446
|
|
|
447
|
addPart(referenceDetailSection);
|
|
448
|
}
|
|
449
|
|
|
450
|
private void createTeamOrPersonBaseDetailSection(RootElement parent) {
|
|
451
|
destroySections();
|
|
452
|
TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
453
|
|
|
454
|
addPart(teamOrPersonBaseDetailSection);
|
|
455
|
}
|
|
456
|
|
|
457
|
private void createTeamDetailSection(RootElement parent) {
|
|
458
|
destroySections();
|
|
459
|
TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
460
|
|
|
461
|
addPart(teamDetailSection);
|
|
462
|
}
|
|
463
|
|
|
464
|
private void createPersonDetailSection(RootElement parent) {
|
|
465
|
destroySections();
|
|
466
|
PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
467
|
addPart(personDetailSection);
|
|
468
|
}
|
|
469
|
|
|
470
|
private void createDescriptionElementSection(RootElement parent) {
|
|
471
|
destroySections();
|
|
472
|
|
|
473
|
DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
474
|
|
|
475
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
476
|
|
|
477
|
DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
478
|
|
|
479
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
480
|
|
|
481
|
DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
482
|
|
|
483
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
484
|
|
|
485
|
addPart(descriptionElementDetailSection);
|
|
486
|
addPart(descriptionElementSourceSection);
|
|
487
|
addPart(descriptionElementMediaSection);
|
|
488
|
}
|
|
489
|
|
|
490
|
private void createDescriptionSection(RootElement parent) {
|
|
491
|
destroySections();
|
|
492
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
493
|
|
|
494
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
495
|
|
|
496
|
NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
497
|
|
|
498
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
499
|
|
|
500
|
// DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
501
|
//
|
|
502
|
// formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
503
|
|
|
504
|
// DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
|
|
505
|
// .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
|
|
506
|
// getConversationHolder(), parent, Section.TWISTIE);
|
|
507
|
//
|
|
508
|
// formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
509
|
|
|
510
|
ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
511
|
|
|
512
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
513
|
|
|
514
|
addPart(descriptionDetailSection);
|
|
515
|
addPart(naturalLanguageSection);
|
|
516
|
// addPart(describedSpecimenSection);
|
|
517
|
// addPart(descriptionSourceSection);
|
|
518
|
addPart(scopeSection);
|
|
519
|
}
|
|
520
|
|
|
521
|
private void createSpecimenDescriptionSection(RootElement parent) {
|
|
522
|
destroySections();
|
|
523
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
524
|
addPart(descriptionDetailSection);
|
|
525
|
}
|
|
526
|
|
|
527
|
private void createUseDescriptionSection(RootElement parent) {
|
|
528
|
destroySections();
|
|
529
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
530
|
|
|
531
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
532
|
|
|
533
|
DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
534
|
|
|
535
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
536
|
|
|
537
|
addPart(descriptionDetailSection);
|
|
538
|
addPart(descriptionSourceSection);
|
|
539
|
|
|
540
|
}
|
|
541
|
|
|
542
|
private void createImageGallerySection(RootElement parent) {
|
|
543
|
destroySections();
|
|
544
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
545
|
|
|
546
|
addPart(descriptionDetailSection);
|
|
547
|
}
|
|
548
|
|
|
549
|
private void createMediaElementSection(RootElement parent) {
|
|
550
|
destroySections();
|
|
551
|
|
|
552
|
MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
553
|
|
|
554
|
addPart(mediaDetailSection);
|
|
555
|
}
|
|
556
|
|
|
557
|
private void createDerivedUnitBaseElementSection(RootElement parent) {
|
|
558
|
destroySections();
|
|
559
|
|
|
560
|
DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
561
|
//TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
|
|
562
|
if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
|
|
563
|
derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
|
|
564
|
}
|
|
565
|
addPart(derivedUnitGeneralDetailSection);
|
|
566
|
|
|
567
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
568
|
|
|
569
|
DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
570
|
addPart(derivedUnitBaseDetailSection);
|
|
571
|
|
|
572
|
//for editors working with facades
|
|
573
|
if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
|
|
574
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
575
|
GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
576
|
addPart(gatheringEventDetailSection);
|
|
577
|
|
|
578
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
579
|
FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
580
|
addPart(fieldUnitDetailSection);
|
|
581
|
}
|
|
582
|
else{
|
|
583
|
|
|
584
|
if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
|
|
585
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
586
|
TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
587
|
addPart(taxonAssociationDetailSection);
|
|
588
|
}
|
|
589
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
590
|
IdentifierDetailSection identifierDetailSection = formFactory.createIdentifierDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
591
|
addPart(identifierDetailSection);
|
|
592
|
}
|
|
593
|
if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
|
|
594
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
595
|
DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
596
|
addPart(determinationDetailSection);
|
|
597
|
}
|
|
598
|
|
|
599
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
600
|
DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
601
|
addPart(derivedUnitTypeDesignationSection);
|
|
602
|
|
|
603
|
}
|
|
604
|
|
|
605
|
private void createFieldUnitSection(RootElement parent) {
|
|
606
|
destroySections();
|
|
607
|
|
|
608
|
FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
609
|
|
|
610
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
611
|
|
|
612
|
GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
613
|
|
|
614
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
615
|
|
|
616
|
FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
617
|
|
|
618
|
addPart(fielUnitGeneralDetailSection);
|
|
619
|
addPart(gatheringEventDetailSection);
|
|
620
|
addPart(fieldUnitDetailSection);
|
|
621
|
|
|
622
|
if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
|
|
623
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
624
|
DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
625
|
addPart(determinationDetailSection);
|
|
626
|
}
|
|
627
|
}
|
|
628
|
|
|
629
|
private void createTissueSampleSection(RootElement parent) {
|
|
630
|
destroySections();
|
|
631
|
|
|
632
|
TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
633
|
|
|
634
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
635
|
|
|
636
|
SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
637
|
|
|
638
|
addPart(section);
|
|
639
|
addPart(sampleDesignationDetailSection);
|
|
640
|
}
|
|
641
|
|
|
642
|
private void createDnaSampleSection(RootElement parent) {
|
|
643
|
destroySections();
|
|
644
|
|
|
645
|
DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
646
|
|
|
647
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
648
|
|
|
649
|
DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
650
|
|
|
651
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
652
|
|
|
653
|
DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
654
|
|
|
655
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
656
|
|
|
657
|
SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
658
|
|
|
659
|
addPart(section);
|
|
660
|
addPart(preparationPreservationSection);
|
|
661
|
addPart(qualitySection);
|
|
662
|
addPart(sampleDesignationDetailSection);
|
|
663
|
}
|
|
664
|
|
|
665
|
private void createSequenceSection(RootElement parent) {
|
|
666
|
destroySections();
|
|
667
|
|
|
668
|
SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
669
|
|
|
670
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
671
|
|
|
672
|
SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
673
|
|
|
674
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
675
|
|
|
676
|
SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
677
|
|
|
678
|
|
|
679
|
addPart(section);
|
|
680
|
addPart(referenceSection);
|
|
681
|
addPart(contigFileSection);
|
|
682
|
}
|
|
683
|
|
|
684
|
private void createSingleReadSection(RootElement parent) {
|
|
685
|
destroySections();
|
|
686
|
|
|
687
|
SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
688
|
addPart(section);
|
|
689
|
|
|
690
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
691
|
|
|
692
|
SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
693
|
addPart(pherogramSection);
|
|
694
|
|
|
695
|
}
|
|
696
|
|
|
697
|
private void createMediaSpecimenSection(RootElement parent) {
|
|
698
|
destroySections();
|
|
699
|
|
|
700
|
MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
701
|
addPart(generalSection);
|
|
702
|
|
|
703
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
704
|
|
|
705
|
RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
|
|
706
|
addPart(rightsSection);
|
|
707
|
|
|
708
|
}
|
|
709
|
|
|
710
|
private void createFeatureDistributionSection(RootElement parent) {
|
|
711
|
destroySections();
|
|
712
|
|
|
713
|
FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
714
|
|
|
715
|
addPart(featureDistributionSection);
|
|
716
|
}
|
|
717
|
|
|
718
|
private void createPolytomousKeyNodeSection(RootElement parent) {
|
|
719
|
destroySections();
|
|
720
|
|
|
721
|
PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
|
|
722
|
|
|
723
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
724
|
|
|
725
|
PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
726
|
|
|
727
|
addPart(polytomousKeyDetailSection);
|
|
728
|
addPart(polytomousKeyNodeDetailSection);
|
|
729
|
|
|
730
|
}
|
|
731
|
|
|
732
|
private void createUseRecordSection(RootElement parent) {
|
|
733
|
destroySections();
|
|
734
|
|
|
735
|
UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
736
|
|
|
737
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
738
|
|
|
739
|
addPart(descriptionUseRecordSection);
|
|
740
|
|
|
741
|
|
|
742
|
}
|
|
743
|
|
|
744
|
private void createUserSection(RootElement parent) {
|
|
745
|
destroySections();
|
|
746
|
|
|
747
|
UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
748
|
|
|
749
|
GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
750
|
|
|
751
|
addPart(userDetailSection);
|
|
752
|
addPart(groupByUserDetailSection);
|
|
753
|
}
|
|
754
|
|
|
755
|
private void createTaxonRelationshipSection(RootElement parent) {
|
|
756
|
destroySections();
|
|
757
|
|
|
758
|
TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
759
|
|
|
760
|
ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
761
|
addPart(taxonRelationshipDetailSection);
|
|
762
|
addPart(referencedEntityBaseDetailSection);
|
|
763
|
}
|
|
764
|
|
|
765
|
private void createTermVocabularySection(RootElement parent) {
|
|
766
|
destroySections();
|
|
767
|
|
|
768
|
TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
769
|
addPart(termVocabularyDetailSection);
|
|
770
|
}
|
|
771
|
|
|
772
|
private void createDefinedTermSection(RootElement parent) {
|
|
773
|
destroySections();
|
|
774
|
|
|
775
|
AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
|
|
776
|
addPart(definedTermDetailSection);
|
|
777
|
}
|
|
778
|
|
|
779
|
}
|