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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.molecular.editor;
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import info.bioinfweb.libralign.pherogram.PherogramFormats.QualityOutputType;
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import info.bioinfweb.libralign.pherogram.model.PherogramComponentModel;
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import info.bioinfweb.libralign.pherogram.view.PherogramView;
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import info.bioinfweb.tic.SWTComponentFactory;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.ui.PartInitException;
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import org.eclipse.ui.PlatformUI;
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import org.eclipse.ui.part.ViewPart;
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/**
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* Component that allows to view a pherogram without the distortion due to aligning it to a sequence as in
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* {@link AlignmentEditor}.
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*
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* @author Ben Stöver
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* @date Nov 20, 2014
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*/
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public class PherogramViewPart extends ViewPart {
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public static final String ID = "eu.etaxonomy.taxeditor.molecular.PherogramView"; //$NON-NLS-1$
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private PherogramView pherogramView = null;
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public static PherogramViewPart createView(PherogramComponentModel model) throws PartInitException {
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PherogramViewPart view = (PherogramViewPart)PlatformUI.getWorkbench().getActiveWorkbenchWindow().getActivePage().showView(ID);
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view.getPherogramView().getTraceCurveView().setModel(model);
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view.getPherogramView().assignSize();
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return view;
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}
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public PherogramView getPherogramView() {
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if (pherogramView == null) {
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pherogramView = new PherogramView();
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pherogramView.getTraceCurveView().getFormats().setShowProbabilityValues(true);
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pherogramView.getTraceCurveView().setHorizontalScale(1);
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pherogramView.getTraceCurveView().setVerticalScale(100);
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pherogramView.getTraceCurveView().getFormats().setQualityOutputType(QualityOutputType.NONE); //TODO Make this user defined
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pherogramView.getTraceCurveView().getFormats().setShowProbabilityValues(false);
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}
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return pherogramView;
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}
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@Override
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public void createPartControl(Composite parent) {
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SWTComponentFactory.getInstance().getSWTComponent(getPherogramView(), parent, SWT.NONE);
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getPherogramView().assignSize();
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}
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@Override
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public void setFocus() {} // nothing to do
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}
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