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// $Id$
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/**
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* Copyright (C) 2014 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.molecular;
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import org.biojava3.core.sequence.compound.NucleotideCompound;
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import info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityDNACompoundSet;
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import info.bioinfweb.libralign.sequenceprovider.SequenceDataProvider;
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import info.bioinfweb.libralign.sequenceprovider.implementations.PackedSequenceDataProvider;
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import info.bioinfweb.libralign.sequenceprovider.tokenset.BioJavaTokenSet;
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/**
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* The LibrAlign sequence data provider used to edit contig alignments with the {@link AlignmentEditor}.
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*
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* @author Ben Stöver
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* @date 04.08.2014
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*/
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public class ContigSequenceDataProvider extends PackedSequenceDataProvider<NucleotideCompound>
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implements SequenceDataProvider<NucleotideCompound> {
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public ContigSequenceDataProvider() {
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super(new BioJavaTokenSet<NucleotideCompound>(AlignmentAmbiguityDNACompoundSet.getAlignmentAmbiguityDNACompoundSet()));
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}
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public void saveToCMD() { //TODO Add cmd node as parameter
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//TODO impl.
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}
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public void loadFromCMD() { //TODO Add cmd node as parameter
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//TODO impl.
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}
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}
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