EDIT

Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.

Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
Draft for ExportSingleReadAlignmentWizard added.

Molecular plugin adjusted to recent changes in JPhyloIO.

Debug outputs removed.
Token set added to CDMSequenceMatrixAdapter.

Debug output added to ExportSequenceToFileHandler.
Bug fix in CDMSequenceMatrixAdapter.
Typo correction.

Revert "Remove double click listener #5758"

This reverts commit 51feebec8022b97e84e7139cf97bf0f6ce721fef.

Revert "Shorten exception logged when CDMMETADATA is missing #5785"

This reverts commit e65ce256d5858f45a546af617e1ca268b247b923.

Shorten exception logged when CDMMETADATA is missing #5785

Remove double click listener #5758

Unnecessary renaming operations removed from POM.
Apache commons.collections dependency is now copied and exported.