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/**
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* Copyright (C) 2011 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.view.e4.details;
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import java.util.Collection;
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import java.util.EnumSet;
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import java.util.HashSet;
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import java.util.Set;
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import javax.inject.Inject;
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import org.eclipse.e4.core.di.annotations.Optional;
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import org.eclipse.e4.ui.di.UIEventTopic;
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import org.eclipse.jface.viewers.ISelection;
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import org.eclipse.jface.viewers.IStructuredSelection;
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import org.eclipse.jface.viewers.SelectionChangedEvent;
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import org.eclipse.jface.viewers.TreeNode;
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import org.eclipse.swt.SWT;
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import org.springframework.security.core.GrantedAuthority;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.Character;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Distribution;
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import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SingleRead;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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import eu.etaxonomy.cdm.model.permission.CRUD;
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import eu.etaxonomy.cdm.model.permission.Group;
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import eu.etaxonomy.cdm.model.permission.User;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.term.DefinedTermBase;
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import eu.etaxonomy.cdm.model.term.TermNode;
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import eu.etaxonomy.cdm.model.term.TermTree;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
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import eu.etaxonomy.taxeditor.editor.IDistributionEditorPart;
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import eu.etaxonomy.taxeditor.event.WorkbenchEventConstants;
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import eu.etaxonomy.taxeditor.l10n.Messages;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
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import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
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import eu.etaxonomy.taxeditor.preference.NameDetailsConfigurator;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.StoreUtil;
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import eu.etaxonomy.taxeditor.store.UsageTermCollection;
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import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
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import eu.etaxonomy.taxeditor.ui.element.RootElement;
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import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailElement;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
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import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
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import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
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import eu.etaxonomy.taxeditor.ui.section.description.detail.DistributionDetailElement;
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import eu.etaxonomy.taxeditor.ui.section.feature.CharacterDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.CharacterNodeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.FeatureNodeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.FeatureTreeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
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import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.vocabulary.DefinedTermDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermMediaSection;
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import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
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import eu.etaxonomy.taxeditor.view.detail.CdmSectionPart;
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import eu.etaxonomy.taxeditor.view.e4.AbstractCdmDataViewerE4;
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/**
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*
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* The DetailsViewer handles the content of the details view (
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* {@link DetailsPartE4}).<br>
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* Depending on the type of the selected element the section of the details view
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* are created.
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*
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* @author pplitzner
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* @date 18.07.2017
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*
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*/
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public class DetailsViewerE4 extends AbstractCdmDataViewerE4 {
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private ISelection selection;
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private boolean detailsEnabled = true;
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private Object activePart;
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public boolean isDetailsEnabled() {
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return detailsEnabled;
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}
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public void setDetailsEnabled(boolean detailsEnabled) {
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this.detailsEnabled = detailsEnabled;
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}
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public void setInput(Object input, Object activePart) {
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this.activePart = activePart;
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setInput(input);
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}
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// START HACK TO MAKE THE DERIVED UNIT FACADE WORK
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// since we are getting implementations of DerivedUnitBase from the bulk
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// editor
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// and not derived unit facade objects,
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@Override
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public void setInput(Object input) {
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if(input instanceof TreeNode){
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input = ((TreeNode) input).getValue();
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}
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if(input instanceof GbifResponse){
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input = ((GbifResponse) input).getDerivedUnitFacade();
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}
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if (input !=null && input instanceof DerivedUnit) {
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DerivedUnit derivedUnit = (DerivedUnit)input;
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try {
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input = DerivedUnitFacade.NewInstance(derivedUnit,
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PreferencesUtil.getDerivedUnitConfigurator());
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} catch (DerivedUnitFacadeNotSupportedException e) {
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MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
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}
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}
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else if(input instanceof FieldUnit){
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input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
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}
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super.setInput(input);
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}
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@Override
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protected void markViewPartDirty() {
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if (getInput() instanceof DerivedUnitFacade) {
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if(part instanceof IDerivedUnitFacadePart){
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part.changed(getInput());
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}
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else{
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DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
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if(facade.innerDerivedUnit()!=null){
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part.changed(facade.innerDerivedUnit());
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}
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else if(facade.innerFieldUnit()!=null){
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part.changed(facade.innerFieldUnit());
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}
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}
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}
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else{
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super.markViewPartDirty();
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}
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}
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/** {@inheritDoc} */
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@Override
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protected void showParts() {
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// FIXME (CM) : Need to clean out this code.
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// Too much type checking to decide which detail view to display.
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// Need to build in a mechanism where navigators / editors are 'aware'
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// of the corresponding detail viewer.
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Object input = getInput();
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if (input == null){
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return;
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}
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destroySections();
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if (input instanceof TaxonBase) {
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if(((TaxonBase) input).getName()==null){
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createEmptySection(Messages.DetailsViewerE4_TAXON_HAS_NO_NAME, rootElement);
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}
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else{
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createTaxonSections(rootElement);
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}
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} else if (input instanceof TaxonName) {
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createNameSections(rootElement);
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} else if (input instanceof Reference) {
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createReferenceSections(rootElement);
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} else if (input instanceof Team) {
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createTeamDetailSection(rootElement);
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} else if (input instanceof Person) {
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createPersonDetailSection(rootElement);
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} else if (input instanceof TeamOrPersonBase) {
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createTeamOrPersonBaseDetailSection(rootElement);
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} else if (input instanceof DescriptionBase) {
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if(input instanceof SpecimenDescription){
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//TODO: add more sections to DetailsView for SpecimenDescription
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createSpecimenDescriptionSection(rootElement);
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}
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else{
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Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
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Boolean isUseDescription = false;
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for (Marker marker : descriptionMarkers) {
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if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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isUseDescription = true;
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}
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}
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if (((DescriptionBase<?>) input).isImageGallery()) {
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createImageGallerySection(rootElement);
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} else if (isUseDescription) {
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createUseDescriptionSection(rootElement);
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} else if (input instanceof TaxonDescription){
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createTaxonDescriptionSection(rootElement);
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} else{
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createDescriptionSection(rootElement, false);
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}
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}
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} else if (input instanceof DescriptionElementBase){
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Set<Marker> descriptionMarkers = new HashSet<>();
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if(((DescriptionElementBase) input).getInDescription()!=null) {
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descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
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}
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Boolean isUseDescription = false;
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for (Marker marker : descriptionMarkers) {
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if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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isUseDescription = true;
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}
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}
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if (isUseDescription == true && input instanceof CategoricalData) {
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createUseRecordSection(rootElement);
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} else {
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createDescriptionElementSection(rootElement, activePart);
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}
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} else if (input instanceof Media) {
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createMediaElementSection(rootElement);
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}
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//FIXME hack to show more informative message to the user when
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//DerivedUnit has more than one FieldUnit #4363
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else if (input instanceof DerivedUnit) {
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DerivedUnit derivedUnit = (DerivedUnit)input;
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try {
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input = DerivedUnitFacade.NewInstance(derivedUnit,
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|
317
|
PreferencesUtil.getDerivedUnitConfigurator());
|
|
318
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
319
|
createEmptySection(e.getMessage(), rootElement);
|
|
320
|
}
|
|
321
|
}
|
|
322
|
else if (input instanceof DerivedUnitFacade) {
|
|
323
|
if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
|
|
324
|
if(((DerivedUnitFacade) input).innerFieldUnit()==null){
|
|
325
|
MessagingUtils.error(DetailsViewerE4.class, "FieldUnit of facade is null", null); //$NON-NLS-1$
|
|
326
|
}
|
|
327
|
else{
|
|
328
|
createFieldUnitSection(rootElement);
|
|
329
|
}
|
|
330
|
}
|
|
331
|
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
|
|
332
|
if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
|
|
333
|
MessagingUtils.error(DetailsViewerE4.class, "DerivedUnit of facade is null", null); //$NON-NLS-1$
|
|
334
|
}
|
|
335
|
else{
|
|
336
|
createDerivedUnitBaseElementSection(rootElement);
|
|
337
|
}
|
|
338
|
}
|
|
339
|
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
|
|
340
|
//TissueSample should only be created by using it's own class
|
|
341
|
//in future using only one class with different SpecimenOrObservationTypes is desired
|
|
342
|
createTissueSampleSection(rootElement);
|
|
343
|
}
|
|
344
|
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.DnaSample){
|
|
345
|
|
|
346
|
if(((DerivedUnitFacade) input).innerDerivedUnit().getRecordBasis()==SpecimenOrObservationType.TissueSample){
|
|
347
|
createTissueSampleSection(rootElement);
|
|
348
|
}
|
|
349
|
else if(((DerivedUnitFacade) input).innerDerivedUnit().getRecordBasis()==SpecimenOrObservationType.DnaSample){
|
|
350
|
createDnaSampleSection(rootElement);
|
|
351
|
}
|
|
352
|
}else if (((DerivedUnitFacade) input).innerDerivedUnit() instanceof MediaSpecimen){
|
|
353
|
createMediaSpecimenSection(rootElement);
|
|
354
|
}
|
|
355
|
|
|
356
|
else{
|
|
357
|
createDerivedUnitBaseElementSection(rootElement);
|
|
358
|
}
|
|
359
|
} else if (input instanceof DnaSample){
|
|
360
|
DnaSample dnaSample = (DnaSample)input;
|
|
361
|
if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
|
|
362
|
createTissueSampleSection(rootElement);
|
|
363
|
}
|
|
364
|
else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
|
|
365
|
createDnaSampleSection(rootElement);
|
|
366
|
}
|
|
367
|
} else if (input instanceof MediaSpecimen){
|
|
368
|
createMediaSpecimenSection(rootElement);
|
|
369
|
}
|
|
370
|
else if(input instanceof Sequence){
|
|
371
|
createSequenceSection(rootElement);
|
|
372
|
}
|
|
373
|
else if(input instanceof SingleRead){
|
|
374
|
createSingleReadSection(rootElement);
|
|
375
|
}
|
|
376
|
else if (input instanceof FeatureNodeContainer) {
|
|
377
|
createFeatureDistributionSection(rootElement);
|
|
378
|
|
|
379
|
} else if (input instanceof TermNode) {
|
|
380
|
TermType type= ((TermNode) input).getTermType();
|
|
381
|
if(type.equals(TermType.Character)){
|
|
382
|
createCharacterNodeSection(rootElement);
|
|
383
|
}
|
|
384
|
else if(type.equals(TermType.Feature)){
|
|
385
|
createFeatureNodeSection(rootElement);
|
|
386
|
}
|
|
387
|
|
|
388
|
} else if (input instanceof TermTree) {
|
|
389
|
createFeatureTreeSection(rootElement);
|
|
390
|
|
|
391
|
} else if (input instanceof Character) {
|
|
392
|
createCharacterSection(rootElement);
|
|
393
|
|
|
394
|
}else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
|
|
395
|
createPolytomousKeyNodeSection(rootElement);
|
|
396
|
} else if (input instanceof User) {
|
|
397
|
createUserSection(rootElement);
|
|
398
|
} else if (input instanceof Group) {
|
|
399
|
createGroupSection(rootElement);
|
|
400
|
} else if (input instanceof TaxonRelationship && ((TaxonRelationship)input).getType()!=null
|
|
401
|
&& (((TaxonRelationship)input).getType().isAnyMisappliedName() || ((TaxonRelationship)input).getType().isAnySynonym() || ((TaxonRelationship)input).getType().isMisappliedNameOrInvalidDesignation())){
|
|
402
|
createMisappliedNameSection(rootElement);
|
|
403
|
}else if (input instanceof TaxonRelationship ) {
|
|
404
|
createTaxonRelationshipSection(rootElement);
|
|
405
|
} else if (input instanceof TermVocabulary) {
|
|
406
|
createTermVocabularySection(rootElement);
|
|
407
|
} else if (input instanceof DefinedTermBase) {
|
|
408
|
createDefinedTermSection(rootElement);
|
|
409
|
|
|
410
|
} else if (input instanceof SelectionChangedEvent ) {
|
|
411
|
IStructuredSelection sel =(IStructuredSelection) ((SelectionChangedEvent)input).getSelection();
|
|
412
|
if (sel.getFirstElement()instanceof Distribution){
|
|
413
|
createDescriptionElementSection(rootElement);
|
|
414
|
}
|
|
415
|
|
|
416
|
// createDescriptionElementSection(rootElement);
|
|
417
|
|
|
418
|
}else {
|
|
419
|
createEmptySection(null, rootElement);
|
|
420
|
}
|
|
421
|
layout();
|
|
422
|
|
|
423
|
}
|
|
424
|
|
|
425
|
private void createGroupSection(RootElement parent) {
|
|
426
|
GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(GroupDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
427
|
MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(MemberDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
428
|
GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,StoreUtil.getSectionStyle(GrantedAuthorityDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
429
|
|
|
430
|
addPart(groupDetailSection);
|
|
431
|
addPart(memberDetailSection);
|
|
432
|
addPart(grantedAuthorityDetailSection);
|
|
433
|
}
|
|
434
|
|
|
435
|
/** {@inheritDoc} */
|
|
436
|
@Override
|
|
437
|
public ISelection getSelection() {
|
|
438
|
return selection;
|
|
439
|
}
|
|
440
|
|
|
441
|
/** {@inheritDoc} */
|
|
442
|
@Override
|
|
443
|
public void setSelection(ISelection selection, boolean reveal) {
|
|
444
|
|
|
445
|
this.selection = selection;
|
|
446
|
|
|
447
|
if(this.selection!=null){
|
|
448
|
SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
|
|
449
|
fireSelectionChanged(selectionChangedEvent);
|
|
450
|
}
|
|
451
|
|
|
452
|
}
|
|
453
|
|
|
454
|
private void createTaxonSections(RootElement parent) {
|
|
455
|
NameDetailsConfigurator config = PreferencesUtil.getPreferredNameDetailsConfiguration();
|
|
456
|
EnumSet<CRUD> requiredCrud;
|
|
457
|
if(getInput() == null || StoreUtil.getCdmEntity(getInput()).getId() == 0) {
|
|
458
|
// new entity, not yet saved
|
|
459
|
requiredCrud = EnumSet.of(CRUD.CREATE);
|
|
460
|
} else {
|
|
461
|
requiredCrud = EnumSet.of(CRUD.UPDATE);
|
|
462
|
}
|
|
463
|
boolean hasPermission = CdmStore.currentAuthentiationHasPermission(StoreUtil.getCdmEntity(getInput()), requiredCrud);
|
|
464
|
if (hasPermission){
|
|
465
|
// check for subtree permissions as well.
|
|
466
|
TaxonBase<?> taxonBase = (TaxonBase<?>)getInput();
|
|
467
|
Taxon acceptedTaxon = null;
|
|
468
|
if (taxonBase instanceof Taxon){
|
|
469
|
acceptedTaxon = (Taxon)taxonBase;
|
|
470
|
}else{
|
|
471
|
acceptedTaxon = ((Synonym)taxonBase).getAcceptedTaxon();
|
|
472
|
}
|
|
473
|
if (acceptedTaxon != null){ //needs discussion if synonyms without accepted taxon should never be filtered by subtree permission(current implementation). See also #8849
|
|
474
|
Set<TaxonNode> nodes = acceptedTaxon.getTaxonNodes();
|
|
475
|
for (TaxonNode node: nodes){
|
|
476
|
hasPermission &= CdmStore.currentAuthentiationHasPermission(node, requiredCrud);
|
|
477
|
if (!hasPermission){
|
|
478
|
//check whether there are explicit TaxonNode rights
|
|
479
|
boolean taxonnodePermissionExists = false;
|
|
480
|
Collection<? extends GrantedAuthority> authorities = CdmStore.getCurrentAuthentiation().getAuthorities();
|
|
481
|
for (GrantedAuthority grantedAuthority: authorities){
|
|
482
|
if (grantedAuthority.getAuthority().startsWith("TAXONNODE")){
|
|
483
|
taxonnodePermissionExists = true;
|
|
484
|
}
|
|
485
|
}
|
|
486
|
if (!taxonnodePermissionExists){
|
|
487
|
hasPermission = true;
|
|
488
|
}
|
|
489
|
}
|
|
490
|
}
|
|
491
|
}
|
|
492
|
}
|
|
493
|
detailsEnabled = hasPermission;
|
|
494
|
ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
|
|
495
|
StoreUtil.getSectionStyle(ParsingMessagesSection.class, getInput().getClass().getCanonicalName(), true));
|
|
496
|
if (config == null){
|
|
497
|
TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
|
|
498
|
StoreUtil.getSectionStyle(TaxonBaseDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
499
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
500
|
// boolean hasPermission = CdmStore.currentAuthentiationHasPermission(getInput(), Operation.UPDATE);
|
|
501
|
taxonBaseDetailSection.setEnabled(detailsEnabled);
|
|
502
|
addPart(taxonBaseDetailSection);
|
|
503
|
}else{
|
|
504
|
if (config.isTaxonSectionActivated()){
|
|
505
|
TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
|
|
506
|
StoreUtil.getSectionStyle(TaxonBaseDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
507
|
taxonBaseDetailSection.setEnabled(detailsEnabled);
|
|
508
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
509
|
addPart(taxonBaseDetailSection);
|
|
510
|
}
|
|
511
|
}
|
|
512
|
NonViralNameDetailSection nonViralNameSection = formFactory
|
|
513
|
.createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
|
|
514
|
StoreUtil.getSectionStyle(NonViralNameDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
515
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
516
|
nonViralNameSection.setEnabled(detailsEnabled);
|
|
517
|
if (config == null || config.isNomenclaturalReferenceSectionActivated()){
|
|
518
|
NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
|
|
519
|
StoreUtil.getSectionStyle(NomenclaturalReferenceDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
520
|
referenceDetailSection.setEnabled(detailsEnabled);
|
|
521
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
522
|
addPart(referenceDetailSection);
|
|
523
|
|
|
524
|
}
|
|
525
|
if ( config == null || config.isNomenclaturalStatusSectionActivated()){
|
|
526
|
NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
|
|
527
|
StoreUtil.getSectionStyle(NomenclaturalStatusSection.class, getInput().getClass().getCanonicalName(), true));
|
|
528
|
nomenclaturalStatusSection.setEnabled(detailsEnabled);
|
|
529
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
530
|
addPart(nomenclaturalStatusSection);
|
|
531
|
}
|
|
532
|
|
|
533
|
if ( config == null || config.isProtologueActivated()){
|
|
534
|
ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(ProtologueSection.class, getInput().getClass().getCanonicalName()));
|
|
535
|
protologSection.setEnabled(detailsEnabled);
|
|
536
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
537
|
addPart(protologSection);
|
|
538
|
}
|
|
539
|
|
|
540
|
if (config == null || config.isTypeDesignationSectionActivated()){
|
|
541
|
TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(TypeDesignationSection.class, getInput().getClass().getCanonicalName()));
|
|
542
|
typeDesignationSection.setEnabled(detailsEnabled);
|
|
543
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
544
|
addPart(typeDesignationSection);
|
|
545
|
}
|
|
546
|
|
|
547
|
if (config == null || config.isNameRelationsSectionActivated()){
|
|
548
|
NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(NameRelationshipDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
549
|
nameRelationshipSection.setEnabled(detailsEnabled);
|
|
550
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
551
|
addPart(nameRelationshipSection);
|
|
552
|
}
|
|
553
|
|
|
554
|
|
|
555
|
addPart(parsingMessagesSection);
|
|
556
|
|
|
557
|
addPart(nonViralNameSection);
|
|
558
|
|
|
559
|
}
|
|
560
|
|
|
561
|
private void createNameSections(RootElement parent) {
|
|
562
|
NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
|
|
563
|
getConversationHolder(), parent, this, false, StoreUtil.getSectionStyle(NonViralNameDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
564
|
|
|
565
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
566
|
|
|
567
|
NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
|
|
568
|
StoreUtil.getSectionStyle(NomenclaturalReferenceDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
569
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
570
|
|
|
571
|
NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
|
|
572
|
StoreUtil.getSectionStyle(NomenclaturalStatusSection.class, getInput().getClass().getCanonicalName(), true));
|
|
573
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
574
|
|
|
575
|
addPart(nonViralNameSection);
|
|
576
|
addPart(nomenclaturalStatusSection);
|
|
577
|
addPart(referenceDetailSection);
|
|
578
|
|
|
579
|
ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(ProtologueSection.class, getInput().getClass().getCanonicalName()));
|
|
580
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
581
|
|
|
582
|
TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(TypeDesignationSection.class, getInput().getClass().getCanonicalName()));
|
|
583
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
584
|
|
|
585
|
NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(NameRelationshipDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
586
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
587
|
addPart(protologSection);
|
|
588
|
addPart(typeDesignationSection);
|
|
589
|
addPart(nameRelationshipSection);
|
|
590
|
|
|
591
|
}
|
|
592
|
|
|
593
|
private void createReferenceSections(RootElement parent) {
|
|
594
|
ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
|
|
595
|
StoreUtil.getSectionStyle(ReferenceDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
596
|
|
|
597
|
addPart(referenceDetailSection);
|
|
598
|
}
|
|
599
|
|
|
600
|
private void createTeamOrPersonBaseDetailSection(RootElement parent) {
|
|
601
|
TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(TeamOrPersonBaseDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
602
|
|
|
603
|
addPart(teamOrPersonBaseDetailSection);
|
|
604
|
}
|
|
605
|
|
|
606
|
private void createTeamDetailSection(RootElement parent) {
|
|
607
|
TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(TeamDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
608
|
|
|
609
|
addPart(teamDetailSection);
|
|
610
|
}
|
|
611
|
|
|
612
|
private void createPersonDetailSection(RootElement parent) {
|
|
613
|
PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(PersonDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
614
|
addPart(personDetailSection);
|
|
615
|
}
|
|
616
|
|
|
617
|
private void createDescriptionElementSection(RootElement parent) {
|
|
618
|
createDescriptionElementSection(parent, null);
|
|
619
|
}
|
|
620
|
|
|
621
|
private void createDescriptionElementSection(RootElement parent, Object activePart) {
|
|
622
|
DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DescriptionElementDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
623
|
descriptionElementDetailSection.setEnabled(this.detailsEnabled);
|
|
624
|
|
|
625
|
// IntextReferenceSection intextReferenceSection = formFactory.createIntextReferenceSection(getConversationHolder(), parent, getSectionStyle(.class, getInput().getClass().getCanonicalName()));
|
|
626
|
|
|
627
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
628
|
DescriptionElementSourceSection descriptionElementSourceSection;
|
|
629
|
if (activePart != null && activePart instanceof IDistributionEditorPart){
|
|
630
|
Reference defaultSource =((IDistributionEditorPart)activePart).getEditor().getDefaultSource();
|
|
631
|
descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, defaultSource, StoreUtil.getSectionStyle(DescriptionElementSourceSection.class, getInput().getClass().getCanonicalName()));
|
|
632
|
|
|
633
|
}else{
|
|
634
|
descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(DescriptionElementSourceSection.class, getInput().getClass().getCanonicalName()) );
|
|
635
|
}
|
|
636
|
|
|
637
|
|
|
638
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
639
|
|
|
640
|
DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(DescriptionElementMediaSection.class, getInput().getClass().getCanonicalName()));
|
|
641
|
|
|
642
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
643
|
|
|
644
|
addPart(descriptionElementDetailSection);
|
|
645
|
addPart(descriptionElementSourceSection);
|
|
646
|
addPart(descriptionElementMediaSection);
|
|
647
|
}
|
|
648
|
|
|
649
|
private void createDescriptionSection(RootElement parent, boolean isTaxonDescription) {
|
|
650
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DescriptionDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
651
|
addPart(descriptionDetailSection);
|
|
652
|
|
|
653
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
654
|
|
|
655
|
if(isTaxonDescription) {
|
|
656
|
NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(
|
|
657
|
getConversationHolder(), parent, this, StoreUtil.getSectionStyle(NaturalLanguageSection.class, getInput().getClass().getCanonicalName(), true));
|
|
658
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
659
|
addPart(naturalLanguageSection);
|
|
660
|
}
|
|
661
|
DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(
|
|
662
|
getConversationHolder(), parent, StoreUtil.getSectionStyle(DescriptionSourceSection.class, getInput().getClass().getCanonicalName(), true));
|
|
663
|
addPart(descriptionSourceSection);
|
|
664
|
|
|
665
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
666
|
|
|
667
|
if(isTaxonDescription) {
|
|
668
|
ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(ScopeSection.class, getInput().getClass().getCanonicalName()));
|
|
669
|
addPart(scopeSection);
|
|
670
|
}
|
|
671
|
}
|
|
672
|
|
|
673
|
private void createTaxonDescriptionSection(RootElement parent) {
|
|
674
|
createDescriptionSection(parent, true);
|
|
675
|
}
|
|
676
|
|
|
677
|
private void createSpecimenDescriptionSection(RootElement parent) {
|
|
678
|
createDescriptionSection(parent, false);
|
|
679
|
}
|
|
680
|
|
|
681
|
private void createUseDescriptionSection(RootElement parent) {
|
|
682
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DescriptionDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
683
|
|
|
684
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
685
|
|
|
686
|
DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(DescriptionSourceSection.class, getInput().getClass().getCanonicalName()));
|
|
687
|
|
|
688
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
689
|
|
|
690
|
addPart(descriptionDetailSection);
|
|
691
|
addPart(descriptionSourceSection);
|
|
692
|
|
|
693
|
}
|
|
694
|
|
|
695
|
private void createImageGallerySection(RootElement parent) {
|
|
696
|
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DescriptionDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
697
|
|
|
698
|
addPart(descriptionDetailSection);
|
|
699
|
}
|
|
700
|
|
|
701
|
private void createMediaElementSection(RootElement parent) {
|
|
702
|
MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(MediaDetailsSection.class, getInput().getClass().getCanonicalName(), true));
|
|
703
|
|
|
704
|
addPart(mediaDetailSection);
|
|
705
|
}
|
|
706
|
|
|
707
|
private void createDerivedUnitBaseElementSection(RootElement parent) {
|
|
708
|
DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DerivedUnitGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
709
|
//TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
|
|
710
|
if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
|
|
711
|
derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
|
|
712
|
}
|
|
713
|
addPart(derivedUnitGeneralDetailSection);
|
|
714
|
|
|
715
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
716
|
|
|
717
|
DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DerivedUnitBaseDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
718
|
addPart(derivedUnitBaseDetailSection);
|
|
719
|
|
|
720
|
//for editors working with facades
|
|
721
|
if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
|
|
722
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
723
|
GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(GatheringEventDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
724
|
addPart(gatheringEventDetailSection);
|
|
725
|
|
|
726
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
727
|
FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FieldUnitDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
728
|
addPart(fieldUnitDetailSection);
|
|
729
|
}
|
|
730
|
else{
|
|
731
|
|
|
732
|
if(PreferencesUtil.isShowTaxonAssociations()){
|
|
733
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
734
|
TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(TaxonAssociationDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
735
|
addPart(taxonAssociationDetailSection);
|
|
736
|
}
|
|
737
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
738
|
DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(DerivedUnitFacadeIdentifierSection.class, getInput().getClass().getCanonicalName()));
|
|
739
|
addPart(identifierDetailSection);
|
|
740
|
}
|
|
741
|
if(!PreferencesUtil.isDeterminationOnlyForFieldUnits()){
|
|
742
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
743
|
DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DeterminationDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
744
|
addPart(determinationDetailSection);
|
|
745
|
}
|
|
746
|
|
|
747
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
748
|
DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DerivedUnitTypeDesignationSection.class, getInput().getClass().getCanonicalName()));
|
|
749
|
addPart(derivedUnitTypeDesignationSection);
|
|
750
|
|
|
751
|
}
|
|
752
|
|
|
753
|
private void createFieldUnitSection(RootElement parent) {
|
|
754
|
FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FieldUnitGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
755
|
|
|
756
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
757
|
|
|
758
|
GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(GatheringEventDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
759
|
|
|
760
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
761
|
|
|
762
|
FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FieldUnitDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
763
|
|
|
764
|
addPart(fielUnitGeneralDetailSection);
|
|
765
|
addPart(gatheringEventDetailSection);
|
|
766
|
addPart(fieldUnitDetailSection);
|
|
767
|
|
|
768
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
769
|
DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DeterminationDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
770
|
addPart(determinationDetailSection);
|
|
771
|
|
|
772
|
}
|
|
773
|
|
|
774
|
private void createTissueSampleSection(RootElement parent) {
|
|
775
|
TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(TissueSampleGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
776
|
|
|
777
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
778
|
|
|
779
|
SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(SampleDesignationDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
780
|
|
|
781
|
addPart(section);
|
|
782
|
addPart(sampleDesignationDetailSection);
|
|
783
|
}
|
|
784
|
|
|
785
|
private void createDnaSampleSection(RootElement parent) {
|
|
786
|
DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DnaSampleGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
787
|
|
|
788
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
789
|
|
|
790
|
DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DnaSamplePreparationPreservationSection.class, getInput().getClass().getCanonicalName(), true));
|
|
791
|
|
|
792
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
793
|
|
|
794
|
DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DnaQualityDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
795
|
|
|
796
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
797
|
|
|
798
|
SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(SampleDesignationDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
799
|
|
|
800
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
801
|
DeterminationDetailSection determinationDetailSection = null;
|
|
802
|
if(!PreferencesUtil.isDeterminationOnlyForFieldUnits()){
|
|
803
|
determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DeterminationDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
804
|
}
|
|
805
|
addPart(section);
|
|
806
|
addPart(preparationPreservationSection);
|
|
807
|
addPart(qualitySection);
|
|
808
|
addPart(sampleDesignationDetailSection);
|
|
809
|
if(!PreferencesUtil.isDeterminationOnlyForFieldUnits()){
|
|
810
|
addPart(determinationDetailSection);
|
|
811
|
}
|
|
812
|
}
|
|
813
|
|
|
814
|
private void createSequenceSection(RootElement parent) {
|
|
815
|
SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(SequenceGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
816
|
|
|
817
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
818
|
|
|
819
|
SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(SequenceReferenceCollectionDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
820
|
|
|
821
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
822
|
|
|
823
|
SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(SequenceContigFileCollectionDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
824
|
|
|
825
|
|
|
826
|
addPart(section);
|
|
827
|
addPart(referenceSection);
|
|
828
|
addPart(contigFileSection);
|
|
829
|
}
|
|
830
|
|
|
831
|
private void createSingleReadSection(RootElement parent) {
|
|
832
|
SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(SingleReadGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
833
|
addPart(section);
|
|
834
|
|
|
835
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
836
|
|
|
837
|
SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(SingleReadPherogramCollectionDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
838
|
addPart(pherogramSection);
|
|
839
|
|
|
840
|
}
|
|
841
|
|
|
842
|
private void createMediaSpecimenSection(RootElement parent) {
|
|
843
|
MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(MediaSpecimenGeneralDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
844
|
addPart(generalSection);
|
|
845
|
|
|
846
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
847
|
|
|
848
|
RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(RightsSection.class, getInput().getClass().getCanonicalName()));
|
|
849
|
// rightsSection.setEntity(generalSection.getEntity().innerDerivedUnit());
|
|
850
|
addPart(rightsSection);
|
|
851
|
|
|
852
|
}
|
|
853
|
|
|
854
|
private void createFeatureTreeSection(RootElement parent) {
|
|
855
|
FeatureTreeDetailSection section = formFactory.createFeatureTreeDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FeatureTreeDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
856
|
|
|
857
|
addPart(section);
|
|
858
|
}
|
|
859
|
|
|
860
|
private void createFeatureNodeSection(RootElement parent) {
|
|
861
|
FeatureNodeDetailSection featureDistributionSection = formFactory.createFeatureNodeDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FeatureNodeDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
862
|
|
|
863
|
addPart(featureDistributionSection);
|
|
864
|
}
|
|
865
|
|
|
866
|
private void createFeatureDistributionSection(RootElement parent) {
|
|
867
|
FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(FeatureDistributionDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
868
|
|
|
869
|
addPart(featureDistributionSection);
|
|
870
|
}
|
|
871
|
|
|
872
|
private void createCharacterNodeSection(RootElement parent) {
|
|
873
|
CharacterNodeDetailSection featureDistributionSection = formFactory.createCharacterNodeDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(CharacterDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
874
|
addPart(featureDistributionSection);
|
|
875
|
}
|
|
876
|
|
|
877
|
private void createCharacterSection(RootElement parent) {
|
|
878
|
CharacterDetailSection featureDistributionSection = formFactory.createCharacterDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(CharacterDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
879
|
addPart(featureDistributionSection);
|
|
880
|
}
|
|
881
|
|
|
882
|
private void createPolytomousKeyNodeSection(RootElement parent) {
|
|
883
|
PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(PolytomousKeyDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
884
|
|
|
885
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
886
|
|
|
887
|
PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(PolytomousKeyNodeDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
888
|
|
|
889
|
addPart(polytomousKeyDetailSection);
|
|
890
|
addPart(polytomousKeyNodeDetailSection);
|
|
891
|
|
|
892
|
}
|
|
893
|
|
|
894
|
private void createUseRecordSection(RootElement parent) {
|
|
895
|
UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,StoreUtil.getSectionStyle(UseRecordDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
896
|
|
|
897
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
898
|
|
|
899
|
addPart(descriptionUseRecordSection);
|
|
900
|
|
|
901
|
|
|
902
|
}
|
|
903
|
|
|
904
|
private void createUserSection(RootElement parent) {
|
|
905
|
UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(UserDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
906
|
|
|
907
|
GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(GroupsByUserDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
908
|
|
|
909
|
addPart(userDetailSection);
|
|
910
|
addPart(groupByUserDetailSection);
|
|
911
|
}
|
|
912
|
|
|
913
|
private void createMisappliedNameSection(RootElement parent) {
|
|
914
|
TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this,
|
|
915
|
StoreUtil.getSectionStyle(TaxonRelationshipDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
916
|
addPart(taxonRelationshipDetailSection);
|
|
917
|
|
|
918
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
919
|
|
|
920
|
|
|
921
|
NonViralNameDetailSection nonViralNameSection = formFactory
|
|
922
|
.createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
|
|
923
|
StoreUtil.getSectionStyle(NonViralNameDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
924
|
addPart(nonViralNameSection);
|
|
925
|
|
|
926
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
927
|
|
|
928
|
NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
|
|
929
|
StoreUtil.getSectionStyle(NomenclaturalReferenceDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
930
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
931
|
addPart(referenceDetailSection);
|
|
932
|
|
|
933
|
|
|
934
|
NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
|
|
935
|
StoreUtil.getSectionStyle(NomenclaturalStatusSection.class, getInput().getClass().getCanonicalName(), true));
|
|
936
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
937
|
addPart(nomenclaturalStatusSection);
|
|
938
|
|
|
939
|
ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(ProtologueSection.class, getInput().getClass().getCanonicalName()));
|
|
940
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
941
|
addPart(protologSection);
|
|
942
|
|
|
943
|
TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(TypeDesignationSection.class, getInput().getClass().getCanonicalName()));
|
|
944
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
945
|
addPart(typeDesignationSection);
|
|
946
|
|
|
947
|
NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(NameRelationshipDetailSection.class, getInput().getClass().getCanonicalName()));
|
|
948
|
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
|
|
949
|
addPart(nameRelationshipSection);
|
|
950
|
|
|
951
|
}
|
|
952
|
|
|
953
|
private void createTaxonRelationshipSection(RootElement parent) {
|
|
954
|
TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(TaxonRelationshipDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
955
|
|
|
956
|
ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(ReferencedEntityDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
957
|
addPart(taxonRelationshipDetailSection);
|
|
958
|
addPart(referencedEntityBaseDetailSection);
|
|
959
|
}
|
|
960
|
private void createTermVocabularySection(RootElement parent) {
|
|
961
|
TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, StoreUtil.getSectionStyle(TermVocabularyDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
962
|
addPart(termVocabularyDetailSection);
|
|
963
|
}
|
|
964
|
|
|
965
|
private void createDefinedTermSection(RootElement parent) {
|
|
966
|
DefinedTermDetailSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, StoreUtil.getSectionStyle(DefinedTermDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
967
|
addPart(definedTermDetailSection);
|
|
968
|
TermMediaSection termMediaSection = formFactory.createTermMediaSection(getConversationHolder(), parent, StoreUtil.getSectionStyle(DefinedTermDetailSection.class, getInput().getClass().getCanonicalName(), true));
|
|
969
|
addPart(termMediaSection);
|
|
970
|
}
|
|
971
|
|
|
972
|
@Override
|
|
973
|
public void update(CdmDataChangeMap arg0) {
|
|
974
|
|
|
975
|
}
|
|
976
|
@Inject
|
|
977
|
@Optional
|
|
978
|
private void updateView(@UIEventTopic(WorkbenchEventConstants.REFRESH_DETAILS)boolean refresh){
|
|
979
|
if(refresh){
|
|
980
|
refresh();
|
|
981
|
}
|
|
982
|
}
|
|
983
|
|
|
984
|
@Inject
|
|
985
|
@Optional
|
|
986
|
private void updateView(@UIEventTopic(WorkbenchEventConstants.REFRESH_DETAILS_DISTRIBUTION)String nameCache){
|
|
987
|
if(nameCache != null && getInput() instanceof Distribution && this.activePart instanceof IDistributionEditorPart){
|
|
988
|
if (part instanceof CdmSectionPart && ((CdmSectionPart)part).getSection() instanceof DescriptionElementDetailSection){
|
|
989
|
for (ICdmFormElement element: ((DescriptionElementDetailSection)((CdmSectionPart)part).getSection()).getElements()){
|
|
990
|
if (element instanceof DescriptionElementDetailElement){
|
|
991
|
for(ICdmFormElement descriptionElement:((DescriptionElementDetailElement)element).getElements()){
|
|
992
|
if (descriptionElement instanceof DistributionDetailElement){
|
|
993
|
((DistributionDetailElement) descriptionElement).setName(nameCache);
|
|
994
|
}
|
|
995
|
}
|
|
996
|
}
|
|
997
|
}
|
|
998
|
}
|
|
999
|
}
|
|
1000
|
}
|
|
1001
|
|
|
1002
|
|
|
1003
|
}
|