|
1
|
// $Id$
|
|
2
|
/**
|
|
3
|
* Copyright (C) 2013 EDIT
|
|
4
|
* European Distributed Institute of Taxonomy
|
|
5
|
* http://www.e-taxonomy.eu
|
|
6
|
*
|
|
7
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
8
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
9
|
*/
|
|
10
|
package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
|
|
11
|
|
|
12
|
import java.io.IOException;
|
|
13
|
import java.util.Collection;
|
|
14
|
import java.util.EnumSet;
|
|
15
|
import java.util.List;
|
|
16
|
import java.util.Map;
|
|
17
|
import java.util.Set;
|
|
18
|
import java.util.UUID;
|
|
19
|
|
|
20
|
import org.apache.lucene.index.CorruptIndexException;
|
|
21
|
import org.apache.lucene.queryParser.ParseException;
|
|
22
|
import org.hibernate.LockMode;
|
|
23
|
import org.hibernate.Session;
|
|
24
|
import org.hibernate.criterion.Criterion;
|
|
25
|
import org.hibernate.envers.query.criteria.AuditCriterion;
|
|
26
|
|
|
27
|
import eu.etaxonomy.cdm.api.service.DeleteResult;
|
|
28
|
import eu.etaxonomy.cdm.api.service.ITaxonService;
|
|
29
|
import eu.etaxonomy.cdm.api.service.TaxaAndNamesSearchMode;
|
|
30
|
import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
|
|
31
|
import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator;
|
|
32
|
import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
|
|
33
|
import eu.etaxonomy.cdm.api.service.config.IncludedTaxonConfiguration;
|
|
34
|
import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator;
|
|
35
|
import eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator;
|
|
36
|
import eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator;
|
|
37
|
import eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO;
|
|
38
|
import eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException;
|
|
39
|
import eu.etaxonomy.cdm.api.service.exception.HomotypicalGroupChangeException;
|
|
40
|
import eu.etaxonomy.cdm.api.service.pager.Pager;
|
|
41
|
import eu.etaxonomy.cdm.api.service.search.LuceneMultiSearchException;
|
|
42
|
import eu.etaxonomy.cdm.api.service.search.SearchResult;
|
|
43
|
import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
|
|
44
|
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
|
|
45
|
import eu.etaxonomy.cdm.model.common.Annotation;
|
|
46
|
import eu.etaxonomy.cdm.model.common.ISourceable;
|
|
47
|
import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
|
|
48
|
import eu.etaxonomy.cdm.model.common.IdentifiableSource;
|
|
49
|
import eu.etaxonomy.cdm.model.common.LSID;
|
|
50
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
51
|
import eu.etaxonomy.cdm.model.common.Marker;
|
|
52
|
import eu.etaxonomy.cdm.model.common.MarkerType;
|
|
53
|
import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
|
|
54
|
import eu.etaxonomy.cdm.model.common.RelationshipBase;
|
|
55
|
import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction;
|
|
56
|
import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
|
|
57
|
import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
|
|
58
|
import eu.etaxonomy.cdm.model.description.Feature;
|
|
59
|
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase;
|
|
60
|
import eu.etaxonomy.cdm.model.location.NamedArea;
|
|
61
|
import eu.etaxonomy.cdm.model.media.Media;
|
|
62
|
import eu.etaxonomy.cdm.model.media.MediaRepresentation;
|
|
63
|
import eu.etaxonomy.cdm.model.media.Rights;
|
|
64
|
import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
|
|
65
|
import eu.etaxonomy.cdm.model.name.Rank;
|
|
66
|
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
|
|
67
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
|
68
|
import eu.etaxonomy.cdm.model.taxon.Classification;
|
|
69
|
import eu.etaxonomy.cdm.model.taxon.Synonym;
|
|
70
|
import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
|
|
71
|
import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
|
|
72
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
73
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
74
|
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
|
|
75
|
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
|
|
76
|
import eu.etaxonomy.cdm.model.view.AuditEvent;
|
|
77
|
import eu.etaxonomy.cdm.model.view.AuditEventRecord;
|
|
78
|
import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
|
|
79
|
import eu.etaxonomy.cdm.persistence.fetch.CdmFetch;
|
|
80
|
import eu.etaxonomy.cdm.persistence.query.Grouping;
|
|
81
|
import eu.etaxonomy.cdm.persistence.query.MatchMode;
|
|
82
|
import eu.etaxonomy.cdm.persistence.query.OrderHint;
|
|
83
|
import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
|
|
84
|
import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
|
|
85
|
import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
|
|
86
|
|
|
87
|
/**
|
|
88
|
* @author pplitzner
|
|
89
|
* @date 27.09.2013
|
|
90
|
*
|
|
91
|
*/
|
|
92
|
public class TransientTaxonService implements ITaxonService {
|
|
93
|
|
|
94
|
private final ITaxonService defaultTaxonService;
|
|
95
|
|
|
96
|
/**
|
|
97
|
* @param defaultTaxonService
|
|
98
|
*/
|
|
99
|
public TransientTaxonService(ITaxonService defaultTaxonService) {
|
|
100
|
this.defaultTaxonService = defaultTaxonService;
|
|
101
|
}
|
|
102
|
|
|
103
|
/**
|
|
104
|
* @param t
|
|
105
|
* @param pageSize
|
|
106
|
* @param pageNumber
|
|
107
|
* @param sort
|
|
108
|
* @param propertyPaths
|
|
109
|
* @return
|
|
110
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
|
|
111
|
*/
|
|
112
|
@Override
|
|
113
|
public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(TaxonBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
|
|
114
|
return defaultTaxonService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
|
|
115
|
}
|
|
116
|
|
|
117
|
/**
|
|
118
|
* @param annotatedObj
|
|
119
|
* @param status
|
|
120
|
* @param pageSize
|
|
121
|
* @param pageNumber
|
|
122
|
* @param orderHints
|
|
123
|
* @param propertyPaths
|
|
124
|
* @return
|
|
125
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
126
|
*/
|
|
127
|
@Override
|
|
128
|
public Pager<Annotation> getAnnotations(TaxonBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
129
|
return defaultTaxonService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
|
|
130
|
}
|
|
131
|
|
|
132
|
/**
|
|
133
|
*
|
|
134
|
* @see eu.etaxonomy.cdm.api.service.IService#clear()
|
|
135
|
*/
|
|
136
|
@Override
|
|
137
|
public void clear() {
|
|
138
|
defaultTaxonService.clear();
|
|
139
|
}
|
|
140
|
|
|
141
|
/**
|
|
142
|
* @param t
|
|
143
|
* @param lockMode
|
|
144
|
* @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
|
|
145
|
*/
|
|
146
|
@Override
|
|
147
|
public void lock(TaxonBase t, LockMode lockMode) {
|
|
148
|
defaultTaxonService.lock(t, lockMode);
|
|
149
|
}
|
|
150
|
|
|
151
|
/**
|
|
152
|
* @param t
|
|
153
|
* @param lockMode
|
|
154
|
* @param propertyPaths
|
|
155
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
|
|
156
|
*/
|
|
157
|
@Override
|
|
158
|
public void refresh(TaxonBase t, LockMode lockMode, List<String> propertyPaths) {
|
|
159
|
defaultTaxonService.refresh(t, lockMode, propertyPaths);
|
|
160
|
}
|
|
161
|
|
|
162
|
/**
|
|
163
|
*
|
|
164
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
|
|
165
|
*/
|
|
166
|
@Override
|
|
167
|
public void updateTitleCache() {
|
|
168
|
defaultTaxonService.updateTitleCache();
|
|
169
|
}
|
|
170
|
|
|
171
|
/**
|
|
172
|
* @param t
|
|
173
|
* @return
|
|
174
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
|
|
175
|
*/
|
|
176
|
@Override
|
|
177
|
public AuditEventRecord<TaxonBase> getNextAuditEvent(TaxonBase t) {
|
|
178
|
return defaultTaxonService.getNextAuditEvent(t);
|
|
179
|
}
|
|
180
|
|
|
181
|
/**
|
|
182
|
* @param annotatableEntity
|
|
183
|
* @param technical
|
|
184
|
* @param pageSize
|
|
185
|
* @param pageNumber
|
|
186
|
* @param orderHints
|
|
187
|
* @param propertyPaths
|
|
188
|
* @return
|
|
189
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
190
|
*/
|
|
191
|
@Override
|
|
192
|
public Pager<Marker> getMarkers(TaxonBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
193
|
return defaultTaxonService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
|
|
194
|
}
|
|
195
|
|
|
196
|
/**
|
|
197
|
* @param clazz
|
|
198
|
* @param stepSize
|
|
199
|
* @param cacheStrategy
|
|
200
|
* @param monitor
|
|
201
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
|
|
202
|
*/
|
|
203
|
@Override
|
|
204
|
public void updateTitleCache(Class<? extends TaxonBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<TaxonBase> cacheStrategy, IProgressMonitor monitor) {
|
|
205
|
defaultTaxonService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
|
|
206
|
}
|
|
207
|
|
|
208
|
/**
|
|
209
|
* @param t
|
|
210
|
* @return
|
|
211
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
|
|
212
|
*/
|
|
213
|
@Override
|
|
214
|
public AuditEventRecord<TaxonBase> getPreviousAuditEvent(TaxonBase t) {
|
|
215
|
return defaultTaxonService.getPreviousAuditEvent(t);
|
|
216
|
}
|
|
217
|
|
|
218
|
/**
|
|
219
|
* @param clazz
|
|
220
|
* @return
|
|
221
|
* @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
|
|
222
|
*/
|
|
223
|
@Override
|
|
224
|
public int count(Class<? extends TaxonBase> clazz) {
|
|
225
|
return defaultTaxonService.count(clazz);
|
|
226
|
}
|
|
227
|
|
|
228
|
/**
|
|
229
|
* @param clazz
|
|
230
|
* @param from
|
|
231
|
* @param to
|
|
232
|
* @param criteria
|
|
233
|
* @param pageSize
|
|
234
|
* @param pageValue
|
|
235
|
* @param sort
|
|
236
|
* @param propertyPaths
|
|
237
|
* @return
|
|
238
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
|
|
239
|
*/
|
|
240
|
@Override
|
|
241
|
public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(Class<? extends TaxonBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
|
|
242
|
return defaultTaxonService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
|
|
243
|
}
|
|
244
|
|
|
245
|
/**
|
|
246
|
* @param lsid
|
|
247
|
* @return
|
|
248
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
|
|
249
|
*/
|
|
250
|
@Override
|
|
251
|
public TaxonBase find(LSID lsid) {
|
|
252
|
return defaultTaxonService.find(lsid);
|
|
253
|
}
|
|
254
|
|
|
255
|
/**
|
|
256
|
* @param persistentObject
|
|
257
|
* @return
|
|
258
|
* @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
259
|
*/
|
|
260
|
@Override
|
|
261
|
public DeleteResult delete(TaxonBase persistentObject) {
|
|
262
|
return defaultTaxonService.delete(persistentObject);
|
|
263
|
}
|
|
264
|
|
|
265
|
/**
|
|
266
|
* @param clazz
|
|
267
|
* @param technical
|
|
268
|
* @param pageSize
|
|
269
|
* @param pageNumber
|
|
270
|
* @param propertyPaths
|
|
271
|
* @return
|
|
272
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
273
|
*/
|
|
274
|
@Override
|
|
275
|
public List<Object[]> groupMarkers(Class<? extends TaxonBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
276
|
return defaultTaxonService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
|
|
277
|
}
|
|
278
|
|
|
279
|
/**
|
|
280
|
* @param uuid
|
|
281
|
* @return
|
|
282
|
* @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
|
|
283
|
*/
|
|
284
|
@Override
|
|
285
|
public boolean exists(UUID uuid) {
|
|
286
|
return defaultTaxonService.exists(uuid);
|
|
287
|
}
|
|
288
|
|
|
289
|
|
|
290
|
/**
|
|
291
|
* @param x
|
|
292
|
* @param y
|
|
293
|
* @return
|
|
294
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
|
|
295
|
*/
|
|
296
|
@Override
|
|
297
|
public TaxonBase replace(TaxonBase x, TaxonBase y) {
|
|
298
|
return defaultTaxonService.replace(x, y);
|
|
299
|
}
|
|
300
|
|
|
301
|
/**
|
|
302
|
* @param uuidSet
|
|
303
|
* @return
|
|
304
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
|
|
305
|
*/
|
|
306
|
@Override
|
|
307
|
public List<TaxonBase> find(Set<UUID> uuidSet) {
|
|
308
|
return defaultTaxonService.find(uuidSet);
|
|
309
|
}
|
|
310
|
|
|
311
|
/**
|
|
312
|
* @param t
|
|
313
|
* @param pageSize
|
|
314
|
* @param pageNumber
|
|
315
|
* @param propertyPaths
|
|
316
|
* @return
|
|
317
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
318
|
*/
|
|
319
|
@Override
|
|
320
|
public Pager<IdentifiableSource> getSources(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
321
|
return defaultTaxonService.getSources(t, pageSize, pageNumber, propertyPaths);
|
|
322
|
}
|
|
323
|
|
|
324
|
/**
|
|
325
|
* @param sec
|
|
326
|
* @param cdmFetch
|
|
327
|
* @param onlyWithChildren
|
|
328
|
* @return
|
|
329
|
* @deprecated
|
|
330
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
|
|
331
|
*/
|
|
332
|
@Deprecated
|
|
333
|
@Override
|
|
334
|
public List<Taxon> getRootTaxa(Reference sec, CdmFetch cdmFetch, boolean onlyWithChildren) {
|
|
335
|
return defaultTaxonService.getRootTaxa(sec, cdmFetch, onlyWithChildren);
|
|
336
|
}
|
|
337
|
|
|
338
|
/**
|
|
339
|
* @param uuid
|
|
340
|
* @return
|
|
341
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
|
|
342
|
*/
|
|
343
|
@Override
|
|
344
|
public TaxonBase find(UUID uuid) {
|
|
345
|
return defaultTaxonService.find(uuid);
|
|
346
|
}
|
|
347
|
|
|
348
|
/**
|
|
349
|
* @param rank
|
|
350
|
* @param sec
|
|
351
|
* @param onlyWithChildren
|
|
352
|
* @param withMisapplications
|
|
353
|
* @param propertyPaths
|
|
354
|
* @return
|
|
355
|
* @deprecated
|
|
356
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
|
|
357
|
*/
|
|
358
|
@Deprecated
|
|
359
|
@Override
|
|
360
|
public List<Taxon> getRootTaxa(Rank rank, Reference sec, boolean onlyWithChildren, boolean withMisapplications, List<String> propertyPaths) {
|
|
361
|
return defaultTaxonService.getRootTaxa(rank, sec, onlyWithChildren, withMisapplications, propertyPaths);
|
|
362
|
}
|
|
363
|
|
|
364
|
/**
|
|
365
|
* @param id
|
|
366
|
* @return
|
|
367
|
* @see eu.etaxonomy.cdm.api.service.IService#find(int)
|
|
368
|
*/
|
|
369
|
@Override
|
|
370
|
public TaxonBase find(int id) {
|
|
371
|
return defaultTaxonService.find(id);
|
|
372
|
}
|
|
373
|
|
|
374
|
/**
|
|
375
|
* @param t
|
|
376
|
* @param pageSize
|
|
377
|
* @param pageNumber
|
|
378
|
* @param propertyPaths
|
|
379
|
* @return
|
|
380
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
381
|
*/
|
|
382
|
@Override
|
|
383
|
public Pager<Rights> getRights(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
384
|
return defaultTaxonService.getRights(t, pageSize, pageNumber, propertyPaths);
|
|
385
|
}
|
|
386
|
|
|
387
|
/**
|
|
388
|
* @param clazz
|
|
389
|
* @param technical
|
|
390
|
* @return
|
|
391
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
|
|
392
|
*/
|
|
393
|
@Override
|
|
394
|
public int countMarkers(Class<? extends TaxonBase> clazz, Boolean technical) {
|
|
395
|
return defaultTaxonService.countMarkers(clazz, technical);
|
|
396
|
}
|
|
397
|
|
|
398
|
/**
|
|
399
|
* @param idSet
|
|
400
|
* @return
|
|
401
|
* @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
|
|
402
|
*/
|
|
403
|
@Override
|
|
404
|
public List<TaxonBase> findById(Set<Integer> idSet) {
|
|
405
|
return defaultTaxonService.findById(idSet);
|
|
406
|
}
|
|
407
|
|
|
408
|
/**
|
|
409
|
* @param clazz
|
|
410
|
* @param idInSource
|
|
411
|
* @param idNamespace
|
|
412
|
* @return
|
|
413
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
|
|
414
|
*/
|
|
415
|
@Override
|
|
416
|
public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
|
|
417
|
return defaultTaxonService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
|
|
418
|
}
|
|
419
|
|
|
420
|
/**
|
|
421
|
* @return
|
|
422
|
* @see eu.etaxonomy.cdm.api.service.IService#getSession()
|
|
423
|
*/
|
|
424
|
@Override
|
|
425
|
public Session getSession() {
|
|
426
|
return defaultTaxonService.getSession();
|
|
427
|
}
|
|
428
|
|
|
429
|
/**
|
|
430
|
* @return
|
|
431
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
|
|
432
|
*/
|
|
433
|
@Override
|
|
434
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCache() {
|
|
435
|
return defaultTaxonService.getUuidAndTitleCache();
|
|
436
|
}
|
|
437
|
|
|
438
|
/**
|
|
439
|
* @param clazz
|
|
440
|
* @param limit
|
|
441
|
* @param start
|
|
442
|
* @param groups
|
|
443
|
* @param propertyPaths
|
|
444
|
* @return
|
|
445
|
* @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
446
|
*/
|
|
447
|
@Override
|
|
448
|
public List<Object[]> group(Class<? extends TaxonBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
|
|
449
|
return defaultTaxonService.group(clazz, limit, start, groups, propertyPaths);
|
|
450
|
}
|
|
451
|
|
|
452
|
/**
|
|
453
|
* @param limit
|
|
454
|
* @param start
|
|
455
|
* @return
|
|
456
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
|
|
457
|
*/
|
|
458
|
@Override
|
|
459
|
public List<RelationshipBase> getAllRelationships(int limit, int start) {
|
|
460
|
return defaultTaxonService.getAllRelationships(limit, start);
|
|
461
|
}
|
|
462
|
|
|
463
|
/**
|
|
464
|
* @param clazz
|
|
465
|
* @param queryString
|
|
466
|
* @param matchmode
|
|
467
|
* @param criteria
|
|
468
|
* @param pageSize
|
|
469
|
* @param pageNumber
|
|
470
|
* @param orderHints
|
|
471
|
* @param propertyPaths
|
|
472
|
* @return
|
|
473
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
474
|
*/
|
|
475
|
@Override
|
|
476
|
public Pager<TaxonBase> findByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
477
|
return defaultTaxonService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
478
|
}
|
|
479
|
|
|
480
|
/**
|
|
481
|
* @return
|
|
482
|
* @deprecated
|
|
483
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
|
|
484
|
*/
|
|
485
|
@Deprecated
|
|
486
|
@Override
|
|
487
|
public OrderedTermVocabulary<TaxonRelationshipType> getTaxonRelationshipTypeVocabulary() {
|
|
488
|
return defaultTaxonService.getTaxonRelationshipTypeVocabulary();
|
|
489
|
}
|
|
490
|
|
|
491
|
/**
|
|
492
|
* @param name
|
|
493
|
* @param sec
|
|
494
|
* @return
|
|
495
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
|
|
496
|
*/
|
|
497
|
@Override
|
|
498
|
public List<TaxonBase> searchTaxaByName(String name, Reference sec) {
|
|
499
|
return defaultTaxonService.searchTaxaByName(name, sec);
|
|
500
|
}
|
|
501
|
|
|
502
|
/**
|
|
503
|
* @param synonym
|
|
504
|
* @param acceptedTaxon
|
|
505
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
|
|
506
|
*/
|
|
507
|
@Override
|
|
508
|
public void swapSynonymAndAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon) {
|
|
509
|
defaultTaxonService.swapSynonymAndAcceptedTaxon(synonym, acceptedTaxon);
|
|
510
|
}
|
|
511
|
|
|
512
|
/**
|
|
513
|
* @param type
|
|
514
|
* @param limit
|
|
515
|
* @param start
|
|
516
|
* @param orderHints
|
|
517
|
* @param propertyPaths
|
|
518
|
* @return
|
|
519
|
* @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
520
|
*/
|
|
521
|
@Override
|
|
522
|
public <S extends TaxonBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
523
|
return defaultTaxonService.list(type, limit, start, orderHints, propertyPaths);
|
|
524
|
}
|
|
525
|
|
|
526
|
/**
|
|
527
|
* @param configurator
|
|
528
|
* @return
|
|
529
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
530
|
*/
|
|
531
|
@Override
|
|
532
|
public Pager<TaxonBase> findByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
|
|
533
|
return defaultTaxonService.findByTitle(configurator);
|
|
534
|
}
|
|
535
|
|
|
536
|
/**
|
|
537
|
* @param synonym
|
|
538
|
* @param acceptedTaxon
|
|
539
|
* @param deleteSynonym
|
|
540
|
* @param copyCitationInfo
|
|
541
|
* @param citation
|
|
542
|
* @param microCitation
|
|
543
|
* @return
|
|
544
|
* @throws HomotypicalGroupChangeException
|
|
545
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
546
|
*/
|
|
547
|
@Override
|
|
548
|
public Taxon changeSynonymToAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon, boolean deleteSynonym, boolean copyCitationInfo, Reference citation, String microCitation) throws HomotypicalGroupChangeException {
|
|
549
|
return defaultTaxonService.changeSynonymToAcceptedTaxon(synonym, acceptedTaxon, deleteSynonym, copyCitationInfo, citation, microCitation);
|
|
550
|
}
|
|
551
|
|
|
552
|
/**
|
|
553
|
* @param clazz
|
|
554
|
* @param queryString
|
|
555
|
* @param matchmode
|
|
556
|
* @param criteria
|
|
557
|
* @return
|
|
558
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
|
|
559
|
*/
|
|
560
|
@Override
|
|
561
|
public Integer countByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
|
|
562
|
return defaultTaxonService.countByTitle(clazz, queryString, matchmode, criteria);
|
|
563
|
}
|
|
564
|
|
|
565
|
/**
|
|
566
|
* @param uuid
|
|
567
|
* @return
|
|
568
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
|
|
569
|
*/
|
|
570
|
@Override
|
|
571
|
public TaxonBase load(UUID uuid) {
|
|
572
|
return defaultTaxonService.load(uuid);
|
|
573
|
}
|
|
574
|
|
|
575
|
/**
|
|
576
|
* @param uuid
|
|
577
|
* @param propertyPaths
|
|
578
|
* @return
|
|
579
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
|
|
580
|
*/
|
|
581
|
@Override
|
|
582
|
public TaxonBase load(UUID uuid, List<String> propertyPaths) {
|
|
583
|
return defaultTaxonService.load(uuid, propertyPaths);
|
|
584
|
}
|
|
585
|
|
|
586
|
/**
|
|
587
|
* @param configurator
|
|
588
|
* @return
|
|
589
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
590
|
*/
|
|
591
|
@Override
|
|
592
|
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
|
|
593
|
return defaultTaxonService.countByTitle(configurator);
|
|
594
|
}
|
|
595
|
|
|
596
|
/**
|
|
597
|
* @param transientObject
|
|
598
|
* @return
|
|
599
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
600
|
*/
|
|
601
|
@Override
|
|
602
|
public TaxonBase merge(TaxonBase transientObject) {
|
|
603
|
return defaultTaxonService.merge(transientObject);
|
|
604
|
}
|
|
605
|
|
|
606
|
/**
|
|
607
|
* @param clazz
|
|
608
|
* @param queryString
|
|
609
|
* @param matchmode
|
|
610
|
* @param criteria
|
|
611
|
* @param pageSize
|
|
612
|
* @param pageNumber
|
|
613
|
* @param orderHints
|
|
614
|
* @param propertyPaths
|
|
615
|
* @return
|
|
616
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
617
|
*/
|
|
618
|
@Override
|
|
619
|
public List<TaxonBase> listByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
620
|
return defaultTaxonService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
621
|
}
|
|
622
|
|
|
623
|
/**
|
|
624
|
* @param type
|
|
625
|
* @param pageSize
|
|
626
|
* @param pageNumber
|
|
627
|
* @param orderHints
|
|
628
|
* @param propertyPaths
|
|
629
|
* @return
|
|
630
|
* @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
631
|
*/
|
|
632
|
@Override
|
|
633
|
public <S extends TaxonBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
634
|
return defaultTaxonService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
635
|
}
|
|
636
|
|
|
637
|
/**
|
|
638
|
* @param persistentObject
|
|
639
|
* @return
|
|
640
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
641
|
*/
|
|
642
|
@Override
|
|
643
|
public UUID refresh(TaxonBase persistentObject) {
|
|
644
|
return defaultTaxonService.refresh(persistentObject);
|
|
645
|
}
|
|
646
|
|
|
647
|
/**
|
|
648
|
* @param synonym
|
|
649
|
* @param toTaxon
|
|
650
|
* @param taxonRelationshipType
|
|
651
|
* @param reference
|
|
652
|
* @param microReference
|
|
653
|
* @return
|
|
654
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
|
|
655
|
*/
|
|
656
|
@Override
|
|
657
|
public Taxon changeSynonymToRelatedTaxon(Synonym synonym, Taxon toTaxon, TaxonRelationshipType taxonRelationshipType, Reference reference, String microReference) {
|
|
658
|
return defaultTaxonService.changeSynonymToRelatedTaxon(synonym, toTaxon, taxonRelationshipType, reference, microReference);
|
|
659
|
}
|
|
660
|
|
|
661
|
/**
|
|
662
|
* @param clazz
|
|
663
|
* @param queryString
|
|
664
|
* @param matchmode
|
|
665
|
* @param criteria
|
|
666
|
* @param pageSize
|
|
667
|
* @param pageNumber
|
|
668
|
* @param orderHints
|
|
669
|
* @param propertyPaths
|
|
670
|
* @return
|
|
671
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
672
|
*/
|
|
673
|
@Override
|
|
674
|
public List<TaxonBase> listByReferenceTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
675
|
return defaultTaxonService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
676
|
}
|
|
677
|
|
|
678
|
/**
|
|
679
|
* @param tableName
|
|
680
|
* @param limit
|
|
681
|
* @param start
|
|
682
|
* @return
|
|
683
|
* @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
|
|
684
|
*/
|
|
685
|
@Override
|
|
686
|
public List<TaxonBase> rows(String tableName, int limit, int start) {
|
|
687
|
return defaultTaxonService.rows(tableName, limit, start);
|
|
688
|
}
|
|
689
|
|
|
690
|
/**
|
|
691
|
* @param newInstances
|
|
692
|
* @return
|
|
693
|
* @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
|
|
694
|
*/
|
|
695
|
@Override
|
|
696
|
public Map<UUID, TaxonBase> save(Collection<TaxonBase> newInstances) {
|
|
697
|
return null;
|
|
698
|
}
|
|
699
|
|
|
700
|
/**
|
|
701
|
* @param syn
|
|
702
|
* @param taxon
|
|
703
|
* @return
|
|
704
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
|
|
705
|
*/
|
|
706
|
@Override
|
|
707
|
public long deleteSynonymRelationships(Synonym syn, Taxon taxon) {
|
|
708
|
return defaultTaxonService.deleteSynonymRelationships(syn, taxon);
|
|
709
|
}
|
|
710
|
|
|
711
|
/**
|
|
712
|
* @param newInstance
|
|
713
|
* @return
|
|
714
|
* @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
715
|
*/
|
|
716
|
@Override
|
|
717
|
public UUID save(TaxonBase newInstance) {
|
|
718
|
return null;
|
|
719
|
}
|
|
720
|
|
|
721
|
/**
|
|
722
|
* @param transientObject
|
|
723
|
* @return
|
|
724
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
725
|
*/
|
|
726
|
@Override
|
|
727
|
public UUID saveOrUpdate(TaxonBase transientObject) {
|
|
728
|
return null;
|
|
729
|
}
|
|
730
|
|
|
731
|
/**
|
|
732
|
* @param synonym
|
|
733
|
* @param newHomotypicalGroup
|
|
734
|
* @param targetTaxon
|
|
735
|
* @param removeFromOtherTaxa
|
|
736
|
* @param setBasionymRelationIfApplicable
|
|
737
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
|
|
738
|
*/
|
|
739
|
@Override
|
|
740
|
public void changeHomotypicalGroupOfSynonym(Synonym synonym, HomotypicalGroup newHomotypicalGroup, Taxon targetTaxon, boolean removeFromOtherTaxa, boolean setBasionymRelationIfApplicable) {
|
|
741
|
defaultTaxonService.changeHomotypicalGroupOfSynonym(synonym, newHomotypicalGroup, targetTaxon, removeFromOtherTaxa, setBasionymRelationIfApplicable);
|
|
742
|
}
|
|
743
|
|
|
744
|
/**
|
|
745
|
* @param transientObjects
|
|
746
|
* @return
|
|
747
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
|
|
748
|
*/
|
|
749
|
@Override
|
|
750
|
public Map<UUID, TaxonBase> saveOrUpdate(Collection<TaxonBase> transientObjects) {
|
|
751
|
return null;
|
|
752
|
}
|
|
753
|
|
|
754
|
/**
|
|
755
|
* @param transientObject
|
|
756
|
* @return
|
|
757
|
* @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
758
|
*/
|
|
759
|
@Override
|
|
760
|
public UUID update(TaxonBase transientObject) {
|
|
761
|
return defaultTaxonService.update(transientObject);
|
|
762
|
}
|
|
763
|
|
|
764
|
/**
|
|
765
|
* @param example
|
|
766
|
* @param includeProperties
|
|
767
|
* @param limit
|
|
768
|
* @param start
|
|
769
|
* @param orderHints
|
|
770
|
* @param propertyPaths
|
|
771
|
* @return
|
|
772
|
* @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
773
|
*/
|
|
774
|
@Override
|
|
775
|
public List<TaxonBase> list(TaxonBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
776
|
return defaultTaxonService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
|
|
777
|
}
|
|
778
|
|
|
779
|
/**
|
|
780
|
* @param oldSynonymRelation
|
|
781
|
* @param newTaxon
|
|
782
|
* @param moveHomotypicGroup
|
|
783
|
* @param newSynonymRelationshipType
|
|
784
|
* @param newReference
|
|
785
|
* @param newReferenceDetail
|
|
786
|
* @param keepReference
|
|
787
|
* @return
|
|
788
|
* @throws HomotypicalGroupChangeException
|
|
789
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
|
|
790
|
*/
|
|
791
|
@Override
|
|
792
|
public SynonymRelationship moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation, Taxon newTaxon, boolean moveHomotypicGroup, SynonymRelationshipType newSynonymRelationshipType, Reference newReference, String newReferenceDetail, boolean keepReference) throws HomotypicalGroupChangeException {
|
|
793
|
return defaultTaxonService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxon, moveHomotypicGroup, newSynonymRelationshipType, newReference, newReferenceDetail, keepReference);
|
|
794
|
}
|
|
795
|
|
|
796
|
/**
|
|
797
|
* @param clazz
|
|
798
|
* @param matchStrategy
|
|
799
|
* @param mergeStrategy
|
|
800
|
* @return
|
|
801
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
|
|
802
|
*/
|
|
803
|
@Override
|
|
804
|
public int deduplicate(Class<? extends TaxonBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
|
805
|
return defaultTaxonService.deduplicate(clazz, matchStrategy, mergeStrategy);
|
|
806
|
}
|
|
807
|
|
|
808
|
/**
|
|
809
|
* @param clazz
|
|
810
|
* @param queryString
|
|
811
|
* @param pageSize
|
|
812
|
* @param pageNumber
|
|
813
|
* @param orderHints
|
|
814
|
* @param matchMode
|
|
815
|
* @return
|
|
816
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
|
|
817
|
*/
|
|
818
|
@Override
|
|
819
|
public Pager<TaxonBase> findTitleCache(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
|
|
820
|
return defaultTaxonService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
|
|
821
|
}
|
|
822
|
|
|
823
|
/**
|
|
824
|
* @param taxon
|
|
825
|
* @param type
|
|
826
|
* @param pageSize
|
|
827
|
* @param pageNumber
|
|
828
|
* @param orderHints
|
|
829
|
* @param propertyPaths
|
|
830
|
* @return
|
|
831
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
832
|
*/
|
|
833
|
@Override
|
|
834
|
public List<TaxonRelationship> listToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
835
|
return defaultTaxonService.listToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
836
|
}
|
|
837
|
|
|
838
|
/**
|
|
839
|
* @param taxon
|
|
840
|
* @param type
|
|
841
|
* @param pageSize
|
|
842
|
* @param pageNumber
|
|
843
|
* @param orderHints
|
|
844
|
* @param propertyPaths
|
|
845
|
* @return
|
|
846
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
847
|
*/
|
|
848
|
@Override
|
|
849
|
public Pager<TaxonRelationship> pageToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
850
|
return defaultTaxonService.pageToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
851
|
}
|
|
852
|
|
|
853
|
/**
|
|
854
|
* @param taxon
|
|
855
|
* @param type
|
|
856
|
* @param pageSize
|
|
857
|
* @param pageNumber
|
|
858
|
* @param orderHints
|
|
859
|
* @param propertyPaths
|
|
860
|
* @return
|
|
861
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
862
|
*/
|
|
863
|
@Override
|
|
864
|
public List<TaxonRelationship> listFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
865
|
return defaultTaxonService.listFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
866
|
}
|
|
867
|
|
|
868
|
/**
|
|
869
|
* @param taxon
|
|
870
|
* @param type
|
|
871
|
* @param pageSize
|
|
872
|
* @param pageNumber
|
|
873
|
* @param orderHints
|
|
874
|
* @param propertyPaths
|
|
875
|
* @return
|
|
876
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
877
|
*/
|
|
878
|
@Override
|
|
879
|
public Pager<TaxonRelationship> pageFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
880
|
return defaultTaxonService.pageFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
881
|
}
|
|
882
|
|
|
883
|
/**
|
|
884
|
* @param taxon
|
|
885
|
* @param includeRelationships
|
|
886
|
* @param maxDepth
|
|
887
|
* @param limit
|
|
888
|
* @param start
|
|
889
|
* @param propertyPaths
|
|
890
|
* @return
|
|
891
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
892
|
*/
|
|
893
|
@Override
|
|
894
|
public Set<Taxon> listRelatedTaxa(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Integer maxDepth, Integer limit, Integer start, List<String> propertyPaths) {
|
|
895
|
return defaultTaxonService.listRelatedTaxa(taxon, includeRelationships, maxDepth, limit, start, propertyPaths);
|
|
896
|
}
|
|
897
|
|
|
898
|
/**
|
|
899
|
* @param taxonBase
|
|
900
|
* @param limit
|
|
901
|
* @param start
|
|
902
|
* @param propertyPaths
|
|
903
|
* @return
|
|
904
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
905
|
*/
|
|
906
|
@Override
|
|
907
|
public List<Classification> listClassifications(TaxonBase taxonBase, Integer limit, Integer start, List<String> propertyPaths) {
|
|
908
|
return defaultTaxonService.listClassifications(taxonBase, limit, start, propertyPaths);
|
|
909
|
}
|
|
910
|
|
|
911
|
/**
|
|
912
|
* @param synonym
|
|
913
|
* @param type
|
|
914
|
* @param pageSize
|
|
915
|
* @param pageNumber
|
|
916
|
* @param orderHints
|
|
917
|
* @param propertyPaths
|
|
918
|
* @return
|
|
919
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
920
|
*/
|
|
921
|
@Override
|
|
922
|
public Pager<SynonymRelationship> getSynonyms(Synonym synonym, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
923
|
return defaultTaxonService.getSynonyms(synonym, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
924
|
}
|
|
925
|
|
|
926
|
/**
|
|
927
|
* @param taxon
|
|
928
|
* @param type
|
|
929
|
* @param pageSize
|
|
930
|
* @param pageNumber
|
|
931
|
* @param orderHints
|
|
932
|
* @param propertyPaths
|
|
933
|
* @return
|
|
934
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
935
|
*/
|
|
936
|
@Override
|
|
937
|
public Pager<SynonymRelationship> getSynonyms(Taxon taxon, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
938
|
return defaultTaxonService.getSynonyms(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
939
|
}
|
|
940
|
|
|
941
|
/**
|
|
942
|
* @param taxon
|
|
943
|
* @param propertyPaths
|
|
944
|
* @return
|
|
945
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
|
|
946
|
*/
|
|
947
|
@Override
|
|
948
|
public List<Synonym> getHomotypicSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
|
|
949
|
return defaultTaxonService.getHomotypicSynonymsByHomotypicGroup(taxon, propertyPaths);
|
|
950
|
}
|
|
951
|
|
|
952
|
/**
|
|
953
|
* @param taxon
|
|
954
|
* @param propertyPaths
|
|
955
|
* @return
|
|
956
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
|
|
957
|
*/
|
|
958
|
@Override
|
|
959
|
public List<List<Synonym>> getHeterotypicSynonymyGroups(Taxon taxon, List<String> propertyPaths) {
|
|
960
|
return defaultTaxonService.getHeterotypicSynonymyGroups(taxon, propertyPaths);
|
|
961
|
}
|
|
962
|
|
|
963
|
/**
|
|
964
|
* @param clazz
|
|
965
|
* @param queryString
|
|
966
|
* @param pageSize
|
|
967
|
* @param pageNumber
|
|
968
|
* @param orderHints
|
|
969
|
* @param propertyPaths
|
|
970
|
* @return
|
|
971
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
972
|
*/
|
|
973
|
@Override
|
|
974
|
public Pager<TaxonBase> search(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
975
|
return defaultTaxonService.search(clazz, queryString, pageSize, pageNumber, orderHints, propertyPaths);
|
|
976
|
}
|
|
977
|
|
|
978
|
/**
|
|
979
|
* @param clazz
|
|
980
|
* @param uninomial
|
|
981
|
* @param infragenericEpithet
|
|
982
|
* @param specificEpithet
|
|
983
|
* @param infraspecificEpithet
|
|
984
|
* @param rank
|
|
985
|
* @param pageSize
|
|
986
|
* @param pageNumber
|
|
987
|
* @return
|
|
988
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
|
|
989
|
*/
|
|
990
|
@Override
|
|
991
|
public Pager<TaxonBase> findTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
|
|
992
|
return defaultTaxonService.findTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
|
|
993
|
}
|
|
994
|
|
|
995
|
/**
|
|
996
|
* @param clazz
|
|
997
|
* @param uninomial
|
|
998
|
* @param infragenericEpithet
|
|
999
|
* @param specificEpithet
|
|
1000
|
* @param infraspecificEpithet
|
|
1001
|
* @param rank
|
|
1002
|
* @param pageSize
|
|
1003
|
* @param pageNumber
|
|
1004
|
* @return
|
|
1005
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
|
|
1006
|
*/
|
|
1007
|
@Override
|
|
1008
|
public List<TaxonBase> listTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
|
|
1009
|
return defaultTaxonService.listTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
|
|
1010
|
}
|
|
1011
|
|
|
1012
|
/**
|
|
1013
|
* @param configurator
|
|
1014
|
* @return
|
|
1015
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
|
|
1016
|
*/
|
|
1017
|
@Override
|
|
1018
|
public Pager<IdentifiableEntity> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator) {
|
|
1019
|
return defaultTaxonService.findTaxaAndNames(configurator);
|
|
1020
|
}
|
|
1021
|
|
|
1022
|
/**
|
|
1023
|
* @param queryString
|
|
1024
|
* @param classification
|
|
1025
|
* @param languages
|
|
1026
|
* @param highlightFragments
|
|
1027
|
* @param pageSize
|
|
1028
|
* @param pageNumber
|
|
1029
|
* @param orderHints
|
|
1030
|
* @param propertyPaths
|
|
1031
|
* @return
|
|
1032
|
* @throws CorruptIndexException
|
|
1033
|
* @throws IOException
|
|
1034
|
* @throws ParseException
|
|
1035
|
* @throws LuceneMultiSearchException
|
|
1036
|
* @deprecated
|
|
1037
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1038
|
*/
|
|
1039
|
@Deprecated
|
|
1040
|
@Override
|
|
1041
|
public Pager<SearchResult<TaxonBase>> findByEverythingFullText(String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
|
|
1042
|
return defaultTaxonService.findByEverythingFullText(queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1043
|
}
|
|
1044
|
|
|
1045
|
/**
|
|
1046
|
* @param clazz
|
|
1047
|
* @param queryString
|
|
1048
|
* @param classification
|
|
1049
|
* @param languages
|
|
1050
|
* @param highlightFragments
|
|
1051
|
* @param pageSize
|
|
1052
|
* @param pageNumber
|
|
1053
|
* @param orderHints
|
|
1054
|
* @param propertyPaths
|
|
1055
|
* @return
|
|
1056
|
* @throws CorruptIndexException
|
|
1057
|
* @throws IOException
|
|
1058
|
* @throws ParseException
|
|
1059
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1060
|
*/
|
|
1061
|
@Override
|
|
1062
|
public Pager<SearchResult<TaxonBase>> findByFullText(Class<? extends TaxonBase> clazz, String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
|
1063
|
return defaultTaxonService.findByFullText(clazz, queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1064
|
}
|
|
1065
|
|
|
1066
|
/**
|
|
1067
|
* @param areaFilter
|
|
1068
|
* @param statusFilter
|
|
1069
|
* @param classification
|
|
1070
|
* @param pageSize
|
|
1071
|
* @param pageNumber
|
|
1072
|
* @param orderHints
|
|
1073
|
* @param propertyPaths
|
|
1074
|
* @return
|
|
1075
|
* @throws IOException
|
|
1076
|
* @throws ParseException
|
|
1077
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1078
|
*/
|
|
1079
|
@Override
|
|
1080
|
public Pager<SearchResult<TaxonBase>> findByDistribution(List<NamedArea> areaFilter, List<PresenceAbsenceTermBase<?>> statusFilter, Classification classification, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws IOException, ParseException {
|
|
1081
|
return defaultTaxonService.findByDistribution(areaFilter, statusFilter, classification, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1082
|
}
|
|
1083
|
|
|
1084
|
/**
|
|
1085
|
* @param searchModes
|
|
1086
|
* @param queryString
|
|
1087
|
* @param classification
|
|
1088
|
* @param namedAreas
|
|
1089
|
* @param distributionStatus
|
|
1090
|
* @param languages
|
|
1091
|
* @param highlightFragments
|
|
1092
|
* @param pageSize
|
|
1093
|
* @param pageNumber
|
|
1094
|
* @param orderHints
|
|
1095
|
* @param propertyPaths
|
|
1096
|
* @return
|
|
1097
|
* @throws CorruptIndexException
|
|
1098
|
* @throws IOException
|
|
1099
|
* @throws ParseException
|
|
1100
|
* @throws LuceneMultiSearchException
|
|
1101
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1102
|
*/
|
|
1103
|
@Override
|
|
1104
|
public Pager<SearchResult<TaxonBase>> findTaxaAndNamesByFullText(EnumSet<TaxaAndNamesSearchMode> searchModes, String queryString, Classification classification, Set<NamedArea> namedAreas, Set<PresenceAbsenceTermBase<?>> distributionStatus, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
|
|
1105
|
return defaultTaxonService.findTaxaAndNamesByFullText(searchModes, queryString, classification, namedAreas, distributionStatus, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1106
|
}
|
|
1107
|
|
|
1108
|
/**
|
|
1109
|
* @param clazz
|
|
1110
|
* @param queryString
|
|
1111
|
* @param classification
|
|
1112
|
* @param features
|
|
1113
|
* @param languages
|
|
1114
|
* @param highlightFragments
|
|
1115
|
* @param pageSize
|
|
1116
|
* @param pageNumber
|
|
1117
|
* @param orderHints
|
|
1118
|
* @param propertyPaths
|
|
1119
|
* @return
|
|
1120
|
* @throws CorruptIndexException
|
|
1121
|
* @throws IOException
|
|
1122
|
* @throws ParseException
|
|
1123
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1124
|
*/
|
|
1125
|
@Override
|
|
1126
|
public Pager<SearchResult<TaxonBase>> findByDescriptionElementFullText(Class<? extends DescriptionElementBase> clazz, String queryString, Classification classification, List<Feature> features, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
|
1127
|
return defaultTaxonService.findByDescriptionElementFullText(clazz, queryString, classification, features, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1128
|
}
|
|
1129
|
|
|
1130
|
/**
|
|
1131
|
* @param taxon
|
|
1132
|
* @param size
|
|
1133
|
* @param height
|
|
1134
|
* @param widthOrDuration
|
|
1135
|
* @param mimeTypes
|
|
1136
|
* @return
|
|
1137
|
* @deprecated
|
|
1138
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
|
|
1139
|
*/
|
|
1140
|
@Deprecated
|
|
1141
|
@Override
|
|
1142
|
public List<MediaRepresentation> getAllMedia(Taxon taxon, int size, int height, int widthOrDuration, String[] mimeTypes) {
|
|
1143
|
return defaultTaxonService.getAllMedia(taxon, size, height, widthOrDuration, mimeTypes);
|
|
1144
|
}
|
|
1145
|
|
|
1146
|
/**
|
|
1147
|
* @param taxon
|
|
1148
|
* @param includeRelationships
|
|
1149
|
* @param limitToGalleries
|
|
1150
|
* @param propertyPath
|
|
1151
|
* @return
|
|
1152
|
* @deprecated
|
|
1153
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
|
|
1154
|
*/
|
|
1155
|
@Deprecated
|
|
1156
|
@Override
|
|
1157
|
public List<Media> listTaxonDescriptionMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, boolean limitToGalleries, List<String> propertyPath) {
|
|
1158
|
return defaultTaxonService.listTaxonDescriptionMedia(taxon, includeRelationships, limitToGalleries, propertyPath);
|
|
1159
|
}
|
|
1160
|
|
|
1161
|
/**
|
|
1162
|
* @param taxon
|
|
1163
|
* @param includeRelationships
|
|
1164
|
* @param limitToGalleries
|
|
1165
|
* @param includeTaxonDescriptions
|
|
1166
|
* @param includeOccurrences
|
|
1167
|
* @param includeTaxonNameDescriptions
|
|
1168
|
* @param propertyPath
|
|
1169
|
* @return
|
|
1170
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
|
|
1171
|
*/
|
|
1172
|
@Override
|
|
1173
|
public List<Media> listMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Boolean limitToGalleries, Boolean includeTaxonDescriptions, Boolean includeOccurrences, Boolean includeTaxonNameDescriptions, List<String> propertyPath) {
|
|
1174
|
return defaultTaxonService.listMedia(taxon, includeRelationships, limitToGalleries, includeTaxonDescriptions, includeOccurrences, includeTaxonNameDescriptions, propertyPath);
|
|
1175
|
}
|
|
1176
|
|
|
1177
|
/**
|
|
1178
|
* @param listOfIDs
|
|
1179
|
* @return
|
|
1180
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
|
|
1181
|
*/
|
|
1182
|
@Override
|
|
1183
|
public List<TaxonBase> findTaxaByID(Set<Integer> listOfIDs) {
|
|
1184
|
return defaultTaxonService.findTaxaByID(listOfIDs);
|
|
1185
|
}
|
|
1186
|
|
|
1187
|
/**
|
|
1188
|
* @param uuid
|
|
1189
|
* @param propertyPaths
|
|
1190
|
* @return
|
|
1191
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
|
|
1192
|
*/
|
|
1193
|
@Override
|
|
1194
|
public TaxonBase findTaxonByUuid(UUID uuid, List<String> propertyPaths) {
|
|
1195
|
return defaultTaxonService.findTaxonByUuid(uuid, propertyPaths);
|
|
1196
|
}
|
|
1197
|
|
|
1198
|
/**
|
|
1199
|
* @return
|
|
1200
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
|
|
1201
|
*/
|
|
1202
|
@Override
|
|
1203
|
public int countAllRelationships() {
|
|
1204
|
return defaultTaxonService.countAllRelationships();
|
|
1205
|
}
|
|
1206
|
|
|
1207
|
/**
|
|
1208
|
* @param propertyPath
|
|
1209
|
* @return
|
|
1210
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
|
|
1211
|
*/
|
|
1212
|
@Override
|
|
1213
|
public List<TaxonNameBase> findIdenticalTaxonNames(List<String> propertyPath) {
|
|
1214
|
return defaultTaxonService.findIdenticalTaxonNames(propertyPath);
|
|
1215
|
}
|
|
1216
|
|
|
1217
|
/**
|
|
1218
|
* @param propertyPath
|
|
1219
|
* @return
|
|
1220
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
|
|
1221
|
*/
|
|
1222
|
@Override
|
|
1223
|
public List<TaxonNameBase> findIdenticalTaxonNameIds(List<String> propertyPath) {
|
|
1224
|
return defaultTaxonService.findIdenticalTaxonNameIds(propertyPath);
|
|
1225
|
}
|
|
1226
|
|
|
1227
|
/**
|
|
1228
|
* @param name
|
|
1229
|
* @return
|
|
1230
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
|
|
1231
|
*/
|
|
1232
|
@Override
|
|
1233
|
public String getPhylumName(TaxonNameBase name) {
|
|
1234
|
return defaultTaxonService.getPhylumName(name);
|
|
1235
|
}
|
|
1236
|
|
|
1237
|
/**
|
|
1238
|
* @param syn
|
|
1239
|
* @return
|
|
1240
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
|
|
1241
|
*/
|
|
1242
|
@Override
|
|
1243
|
public long deleteSynonymRelationships(Synonym syn) {
|
|
1244
|
return defaultTaxonService.deleteSynonymRelationships(syn);
|
|
1245
|
}
|
|
1246
|
|
|
1247
|
/**
|
|
1248
|
* @param taxonBase
|
|
1249
|
* @param type
|
|
1250
|
* @param pageSize
|
|
1251
|
* @param pageNumber
|
|
1252
|
* @param orderHints
|
|
1253
|
* @param propertyPaths
|
|
1254
|
* @param direction
|
|
1255
|
* @return
|
|
1256
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
|
|
1257
|
*/
|
|
1258
|
@Override
|
|
1259
|
public List<SynonymRelationship> listSynonymRelationships(TaxonBase taxonBase, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths, Direction direction) {
|
|
1260
|
return defaultTaxonService.listSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction);
|
|
1261
|
}
|
|
1262
|
|
|
1263
|
/**
|
|
1264
|
* @param taxonName
|
|
1265
|
* @return
|
|
1266
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
|
|
1267
|
*/
|
|
1268
|
@Override
|
|
1269
|
public Taxon findBestMatchingTaxon(String taxonName) {
|
|
1270
|
return defaultTaxonService.findBestMatchingTaxon(taxonName);
|
|
1271
|
}
|
|
1272
|
|
|
1273
|
/**
|
|
1274
|
* @param config
|
|
1275
|
* @return
|
|
1276
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
|
|
1277
|
*/
|
|
1278
|
@Override
|
|
1279
|
public Taxon findBestMatchingTaxon(MatchingTaxonConfigurator config) {
|
|
1280
|
return defaultTaxonService.findBestMatchingTaxon(config);
|
|
1281
|
}
|
|
1282
|
|
|
1283
|
/**
|
|
1284
|
* @param taxonName
|
|
1285
|
* @return
|
|
1286
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
|
|
1287
|
*/
|
|
1288
|
@Override
|
|
1289
|
public Synonym findBestMatchingSynonym(String taxonName) {
|
|
1290
|
return defaultTaxonService.findBestMatchingSynonym(taxonName);
|
|
1291
|
}
|
|
1292
|
|
|
1293
|
/**
|
|
1294
|
* @return
|
|
1295
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
|
|
1296
|
*/
|
|
1297
|
@Override
|
|
1298
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheTaxon() {
|
|
1299
|
return defaultTaxonService.getUuidAndTitleCacheTaxon();
|
|
1300
|
}
|
|
1301
|
|
|
1302
|
/**
|
|
1303
|
* @return
|
|
1304
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
|
|
1305
|
*/
|
|
1306
|
@Override
|
|
1307
|
public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheSynonym() {
|
|
1308
|
return defaultTaxonService.getUuidAndTitleCacheSynonym();
|
|
1309
|
}
|
|
1310
|
|
|
1311
|
/**
|
|
1312
|
* @param configurator
|
|
1313
|
* @return
|
|
1314
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
|
|
1315
|
*/
|
|
1316
|
@Override
|
|
1317
|
public List<UuidAndTitleCache<TaxonBase>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator) {
|
|
1318
|
return defaultTaxonService.findTaxaAndNamesForEditor(configurator);
|
|
1319
|
}
|
|
1320
|
|
|
1321
|
/**
|
|
1322
|
* @param taxon
|
|
1323
|
* @param tree
|
|
1324
|
* @param type
|
|
1325
|
* @param doWithMisappliedNames
|
|
1326
|
* @return
|
|
1327
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
|
|
1328
|
*/
|
|
1329
|
@Override
|
|
1330
|
public List<Synonym> createInferredSynonyms(Taxon taxon, Classification tree, SynonymRelationshipType type, boolean doWithMisappliedNames) {
|
|
1331
|
return defaultTaxonService.createInferredSynonyms(taxon, tree, type, doWithMisappliedNames);
|
|
1332
|
}
|
|
1333
|
|
|
1334
|
/**
|
|
1335
|
* @param taxon
|
|
1336
|
* @param tree
|
|
1337
|
* @param doWithMisappliedNames
|
|
1338
|
* @return
|
|
1339
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
|
|
1340
|
*/
|
|
1341
|
@Override
|
|
1342
|
public List<Synonym> createAllInferredSynonyms(Taxon taxon, Classification tree, boolean doWithMisappliedNames) {
|
|
1343
|
return defaultTaxonService.createAllInferredSynonyms(taxon, tree, doWithMisappliedNames);
|
|
1344
|
}
|
|
1345
|
|
|
1346
|
/* (non-Javadoc)
|
|
1347
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
|
|
1348
|
*/
|
|
1349
|
@Override
|
|
1350
|
public DeleteResult deleteSynonym(Synonym arg0, SynonymDeletionConfigurator arg1) {
|
|
1351
|
return defaultTaxonService.deleteSynonym(arg0, arg1);
|
|
1352
|
}
|
|
1353
|
|
|
1354
|
/* (non-Javadoc)
|
|
1355
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
|
|
1356
|
*/
|
|
1357
|
@Override
|
|
1358
|
public DeleteResult deleteSynonym(Synonym arg0, Taxon arg1, SynonymDeletionConfigurator arg2) {
|
|
1359
|
return defaultTaxonService.deleteSynonym(arg0, arg1, arg2);
|
|
1360
|
}
|
|
1361
|
|
|
1362
|
/* (non-Javadoc)
|
|
1363
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification)
|
|
1364
|
*/
|
|
1365
|
@Override
|
|
1366
|
public DeleteResult deleteTaxon(Taxon arg0, TaxonDeletionConfigurator arg1, Classification arg2) {
|
|
1367
|
return defaultTaxonService.deleteTaxon(arg0, arg1, arg2);
|
|
1368
|
}
|
|
1369
|
|
|
1370
|
/* (non-Javadoc)
|
|
1371
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
|
|
1372
|
*/
|
|
1373
|
@Override
|
|
1374
|
public List<List<Synonym>> getSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
|
|
1375
|
return defaultTaxonService.getSynonymsByHomotypicGroup(taxon, propertyPaths);
|
|
1376
|
}
|
|
1377
|
|
|
1378
|
@Override
|
|
1379
|
public Synonym changeRelatedTaxonToSynonym(Taxon fromTaxon, Taxon toTaxon,
|
|
1380
|
TaxonRelationshipType oldRelationshipType,
|
|
1381
|
SynonymRelationshipType synonymRelationshipType)
|
|
1382
|
throws DataChangeNoRollbackException {
|
|
1383
|
|
|
1384
|
return defaultTaxonService.changeRelatedTaxonToSynonym(fromTaxon, toTaxon, oldRelationshipType, synonymRelationshipType);
|
|
1385
|
}
|
|
1386
|
|
|
1387
|
/* (non-Javadoc)
|
|
1388
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1389
|
*/
|
|
1390
|
@Override
|
|
1391
|
public Pager<Taxon> pageAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
|
|
1392
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
1393
|
return defaultTaxonService.pageAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1394
|
}
|
|
1395
|
|
|
1396
|
/* (non-Javadoc)
|
|
1397
|
* @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
1398
|
*/
|
|
1399
|
@Override
|
|
1400
|
public List<Taxon> listAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
|
|
1401
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
1402
|
return defaultTaxonService.listAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
|
|
1403
|
}
|
|
1404
|
|
|
1405
|
@Override
|
|
1406
|
public List<String> isDeletable(TaxonBase object,
|
|
1407
|
DeleteConfiguratorBase config) {
|
|
1408
|
// TODO Auto-generated method stub
|
|
1409
|
return null;
|
|
1410
|
}
|
|
1411
|
|
|
1412
|
@Override
|
|
1413
|
public IncludedTaxaDTO listIncludedTaxa(UUID taxonUuid,
|
|
1414
|
IncludedTaxonConfiguration configuration) {
|
|
1415
|
// TODO Auto-generated method stub
|
|
1416
|
return null;
|
|
1417
|
}
|
|
1418
|
|
|
1419
|
@Override
|
|
1420
|
public TaxonBase findWithoutFlush(UUID uuid) {
|
|
1421
|
return defaultTaxonService.findWithoutFlush(uuid);
|
|
1422
|
}
|
|
1423
|
|
|
1424
|
|
|
1425
|
|
|
1426
|
|
|
1427
|
|
|
1428
|
|
|
1429
|
}
|