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/**
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* Copyright (C) 2014 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.molecular.Primer;
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import eu.etaxonomy.cdm.model.molecular.SequenceString;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
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import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
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import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
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import eu.etaxonomy.taxeditor.ui.element.LayoutConstants;
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import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.AnnotationSection;
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import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
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/**
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* @author pplitzner
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* @date 06.01.2014
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*
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*/
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public class PrimerGeneralDetailElement extends AbstractCdmDetailElement<Primer> {
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private TextWithLabelElement textPrimerName;
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// we are using a basic text field which is backed up by a Sequence object modelwise.
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// This is a bit of a overhead as we may just need the sequence string. This may change in future in both directions:
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// either extending this view to support the remaining fields of Sequence or by switching to the more basic SequenceString model element
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private TextWithLabelElement textPrimerSequence;
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private TermComboElement<DefinedTerm> comboMarker;
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private EntitySelectionElement<Reference> selectionReference;
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/**
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* @param formFactory
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* @param formElement
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*/
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public PrimerGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
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super(formFactory, formElement);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
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* (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
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*/
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@Override
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protected void createControls(ICdmFormElement formElement, Primer entity, int style) {
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textPrimerName = formFactory.createTextWithLabelElement(formElement, "Primer Name", entity.getLabel(), style);
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String sequenceString = null;
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if(entity.getSequence()!=null){
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sequenceString = entity.getSequence().getString();
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}
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textPrimerSequence = formFactory.createTextWithLabelElement(formElement, "Primer seq. 5'->3'", sequenceString, style);
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comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
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selectionReference = formFactory
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.createSelectionElement(Reference.class,//getConversationHolder(),
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formElement, "Reference",
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entity.getPublishedIn(),
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EntitySelectionElement.ALL, style);
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AnnotationSection annotationSection = formFactory.createAnnotationSection(getConversationHolder(), formElement, style);
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annotationSection.setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1));
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annotationSection.setEntity(entity);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
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* .lang.Object)
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*/
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@Override
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public void handleEvent(Object eventSource) {
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if(eventSource==textPrimerName){
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getEntity().setLabel(textPrimerName.getText());
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}
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else if(eventSource==comboMarker){
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getEntity().setDnaMarker(comboMarker.getSelection());
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}
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else if(eventSource==textPrimerSequence){
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SequenceString sequenceString = getEntity().getSequence();
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if(sequenceString==null){
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sequenceString = SequenceString.NewInstance("");
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getEntity().setSequence(sequenceString);
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}
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sequenceString.setString(textPrimerSequence.getText());
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}
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else if(eventSource==selectionReference){
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getEntity().setPublishedIn(selectionReference.getSelection());
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}
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}
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}
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