Revision b7acd48e
Added by Patrick Plitzner over 9 years ago
- added missing parameters for SingleRead DetailsView
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SingleReadGeneralDetailElement.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
import eu.etaxonomy.cdm.model.agent.AgentBase; |
| 13 | 13 |
import eu.etaxonomy.cdm.model.common.DefinedTerm; |
| 14 |
import eu.etaxonomy.cdm.model.molecular.Primer; |
|
| 15 |
import eu.etaxonomy.cdm.model.molecular.Sequence; |
|
| 16 |
import eu.etaxonomy.cdm.model.molecular.SequenceString; |
|
| 14 | 17 |
import eu.etaxonomy.cdm.model.molecular.SingleRead; |
| 18 |
import eu.etaxonomy.cdm.model.occurrence.MaterialOrMethodEvent; |
|
| 15 | 19 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 16 | 20 |
import eu.etaxonomy.taxeditor.ui.combo.TermComboElement; |
| 17 | 21 |
import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory; |
| ... | ... | |
| 64 | 68 |
getConversationHolder(), formElement, "Sequencing Staff", |
| 65 | 69 |
null, |
| 66 | 70 |
EntitySelectionElement.ALL, style); |
| 67 |
// comboMaterialOrMethod = formFactory.createTermComboElement(DefinedTerm.class, formElement, "Mat. & Meth.", entity.getMaterialOrMethod().getDefinedMaterialOrMethod(), style); |
|
| 71 |
MaterialOrMethodEvent materialOrMethod = entity.getMaterialOrMethod(); |
|
| 72 |
DefinedTerm definedMaterialOrMethod = null; |
|
| 73 |
if(materialOrMethod!=null){
|
|
| 74 |
definedMaterialOrMethod = materialOrMethod.getDefinedMaterialOrMethod(); |
|
| 75 |
} |
|
| 76 |
comboMaterialOrMethod = formFactory.createTermComboElement(DefinedTerm.class, formElement, "Mat. & Meth.", definedMaterialOrMethod, style); |
|
| 68 | 77 |
textChromatogram = formFactory.createTextWithLabelElement(formElement, "Read Chromatogram", "XXX", style); |
| 69 |
// textReadLength = formFactory.createNumberTextWithLabelElement(formElement, "Read Length", entity.getSequence().getLength(), style); |
|
| 70 |
// textEditedSequence = formFactory.createTextWithLabelElement(formElement, "Edited Sequence 5'->3'", entity.getSequenceString(), style); |
|
| 71 |
// textPrimerName = formFactory.createTextWithLabelElement(formElement, "Primer Name", entity.getPrimer().getLabel(), style); |
|
| 72 |
// textPrimerSequence = formFactory.createTextWithLabelElement(formElement, "Primer seq. 5'->3'", entity.getPrimer().getSequence().getSequenceString(), style); |
|
| 78 |
|
|
| 79 |
//TODO sequence can be null if DerivateView is opened again. Why?? When initially created it is not null |
|
| 80 |
SequenceString editedSequence = entity.getSequence(); |
|
| 81 |
int readLength = 0; |
|
| 82 |
String editedSequenceString = ""; |
|
| 83 |
if(editedSequence!=null){
|
|
| 84 |
readLength = editedSequence.getLength(); |
|
| 85 |
editedSequenceString = editedSequence.getString(); |
|
| 86 |
} |
|
| 87 |
textReadLength = formFactory.createNumberTextWithLabelElement(formElement, "Read Length", readLength, style); |
|
| 88 |
textEditedSequence = formFactory.createTextWithLabelElement(formElement, "Edited Sequence 5'->3'", editedSequenceString, style); |
|
| 89 |
|
|
| 90 |
Primer primer = entity.getPrimer(); |
|
| 91 |
String primerLabel = ""; |
|
| 92 |
String primerSequence = ""; |
|
| 93 |
Reference primerReference = null; |
|
| 94 |
if(primer!=null){
|
|
| 95 |
primerLabel = primer.getLabel(); |
|
| 96 |
primerSequence = primer.getSequence()==null?"":primer.getSequence().getSequenceString(); |
|
| 97 |
primerReference = primer.getPublishedIn(); |
|
| 98 |
} |
|
| 99 |
textPrimerName = formFactory.createTextWithLabelElement(formElement, "Primer Name", primerLabel, style); |
|
| 100 |
textPrimerSequence = formFactory.createTextWithLabelElement(formElement, "Primer seq. 5'->3'", primerSequence, style); |
|
| 73 | 101 |
|
| 74 | 102 |
selectionReference = formFactory |
| 75 | 103 |
.createSelectionElement(Reference.class, |
| 76 | 104 |
getConversationHolder(), formElement, "Reference", |
| 77 |
null,
|
|
| 105 |
primerReference,
|
|
| 78 | 106 |
EntitySelectionElement.ALL, style); |
| 79 | 107 |
} |
| 80 | 108 |
|
| ... | ... | |
| 87 | 115 |
*/ |
| 88 | 116 |
@Override |
| 89 | 117 |
public void handleEvent(Object eventSource) {
|
| 118 |
if(eventSource==dateElement){
|
|
| 119 |
getEntity().setDateSequenced(dateElement.getTimePeriod()); |
|
| 120 |
} |
|
| 121 |
else if(eventSource==selectionSequencingStaff){
|
|
| 122 |
getEntity().setActor(selectionSequencingStaff.getSelection()); |
|
| 123 |
} |
|
| 124 |
else if(eventSource==comboMaterialOrMethod){
|
|
| 125 |
getEntity().getMaterialOrMethod().setDefinedMaterialOrMethod(comboMaterialOrMethod.getSelection()); |
|
| 126 |
} |
|
| 127 |
else if(eventSource==textChromatogram){
|
|
| 128 |
//TODO implement |
|
| 129 |
} |
|
| 130 |
else if(eventSource==textReadLength){
|
|
| 131 |
getEditedSequence().setLength(textReadLength.getInteger()); |
|
| 132 |
} |
|
| 133 |
else if(eventSource==textEditedSequence){
|
|
| 134 |
getEditedSequence().setString(textEditedSequence.getText()); |
|
| 135 |
} |
|
| 136 |
else if(eventSource==textPrimerName){
|
|
| 137 |
getPrimer().setLabel(textPrimerName.getText()); |
|
| 138 |
} |
|
| 139 |
else if(eventSource==textPrimerSequence){
|
|
| 140 |
Sequence sequence = getPrimer().getSequence(); |
|
| 141 |
if(sequence==null){
|
|
| 142 |
sequence = Sequence.NewInstance("");
|
|
| 143 |
} |
|
| 144 |
sequence.setSequenceString(textPrimerSequence.getText()); |
|
| 145 |
} |
|
| 146 |
else if(eventSource==selectionReference){
|
|
| 147 |
getPrimer().setPublishedIn(selectionReference.getSelection()); |
|
| 148 |
} |
|
| 149 |
} |
|
| 150 |
|
|
| 151 |
/** |
|
| 152 |
* @return |
|
| 153 |
*/ |
|
| 154 |
private SequenceString getEditedSequence() {
|
|
| 155 |
SequenceString sequence = getEntity().getSequence(); |
|
| 156 |
if(sequence==null){
|
|
| 157 |
sequence = SequenceString.NewInstance(); |
|
| 158 |
} |
|
| 159 |
return sequence; |
|
| 160 |
} |
|
| 161 |
|
|
| 162 |
private Primer getPrimer(){
|
|
| 163 |
Primer primer = getEntity().getPrimer(); |
|
| 164 |
if(primer==null){
|
|
| 165 |
primer = Primer.NewInstance("");
|
|
| 166 |
} |
|
| 167 |
return primer; |
|
| 90 | 168 |
} |
| 91 | 169 |
|
| 92 | 170 |
} |
Also available in: Unified diff