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// $Id$
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/**
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 * Copyright (C) 2011 EDIT
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 * European Distributed Institute of Taxonomy
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 * http://www.e-taxonomy.eu
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 *
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 * The contents of this file are subject to the Mozilla Public License Version 1.1
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 * See LICENSE.TXT at the top of this package for the full license terms.
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 */
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package eu.etaxonomy.taxeditor.view.detail;
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import java.util.Set;
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import org.eclipse.jface.viewers.ISelection;
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import org.eclipse.jface.viewers.SelectionChangedEvent;
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import org.eclipse.jface.viewers.TreeNode;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.ui.forms.widgets.ExpandableComposite;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.Group;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.common.User;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SingleRead;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
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import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
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import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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import eu.etaxonomy.taxeditor.store.UsageTermCollection;
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import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
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import eu.etaxonomy.taxeditor.ui.element.RootElement;
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import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
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import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
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import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
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import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
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import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
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import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
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import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
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import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
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import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
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import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
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import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
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/**
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 *
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 * The DetailsViewer handles the content of the details view (
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 * {@link DetailsViewPart}).<br>
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 * Depending on the type of the selected element the section of the details view
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 * are created.
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 *
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 * @author n.hoffmann
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 * @created Feb 12, 2010
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 * @version 1.0
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 */
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public class DetailsViewer extends AbstractCdmDataViewer {
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    private ISelection selection;
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    public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
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        super(parent, viewPart);
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    }
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    // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
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    // since we are getting implementations of DerivedUnitBase from the bulk
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    // editor
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    // and not derived unit facade objects,
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    @Override
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    public void setInput(Object input) {
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        if(input instanceof TreeNode){
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            input = ((TreeNode) input).getValue();
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        }
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        if(input instanceof GbifResponse){
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            input = ((GbifResponse) input).getDerivedUnitFacade();
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        }
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        if (input.getClass().equals(DerivedUnit.class)) {
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            DerivedUnit derivedUnit = (DerivedUnit)input;
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            try {
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                input = DerivedUnitFacade.NewInstance(derivedUnit,
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                        PreferencesUtil.getDerivedUnitConfigurator());
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            } catch (DerivedUnitFacadeNotSupportedException e) {
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//                MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
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            }
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        }
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        else if(input instanceof FieldUnit){
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            input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
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        }
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        super.setInput(input);
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    }
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    @Override
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    protected void markViewPartDirty() {
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        if (getInput() instanceof DerivedUnitFacade) {
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            DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
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            if(facade.innerDerivedUnit()!=null){
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                getViewPart().changed(facade.innerDerivedUnit());
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            }
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            else if(facade.innerFieldUnit()!=null){
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                getViewPart().changed(facade.innerFieldUnit());
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            }
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        }
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        else{
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            super.markViewPartDirty();
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        }
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    }
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    // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
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    /** {@inheritDoc} */
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    @Override
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    protected void showParts() {
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        // FIXME (CM) : Need to clean out this code.
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        // Too much type checking to decide which detail view to display.
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        // Need to build in a mechanism where navigators / editors are 'aware'
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        // of the corresponding detail viewer.
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        Object input = getInput();
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        destroySections();
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        if (input instanceof TaxonBase) {
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            if(((TaxonBase) input).getName()==null){
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                createEmptySection(rootElement);
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            }
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            else{
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                createTaxonSections(rootElement);
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            }
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        } else if (input instanceof NonViralName) {
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            createNameSections(rootElement);
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        } else if (input instanceof Reference) {
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            createReferenceSections(rootElement);
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        } else if (input instanceof Team) {
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            createTeamDetailSection(rootElement);
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        } else if (input instanceof Person) {
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            createPersonDetailSection(rootElement);
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        } else if (input instanceof TeamOrPersonBase) {
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            createTeamOrPersonBaseDetailSection(rootElement);
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        } else if (input instanceof DescriptionBase) {
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            if(input instanceof SpecimenDescription){
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                //TODO: add more sections to DetailsView for SpecimenDescription
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                createSpecimenDescriptionSection(rootElement);
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            }
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            else{
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                Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
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                Boolean isUseDescription = false;
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                for (Marker marker : descriptionMarkers) {
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                    if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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                        isUseDescription = true;
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                    }
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                }
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                if (((DescriptionBase<?>) input).isImageGallery()) {
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                    createImageGallerySection(rootElement);
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                } else if (isUseDescription) {
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                    createUseDescriptionSection(rootElement);
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                } else {
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                    createDescriptionSection(rootElement);
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                }
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            }
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        } else if (input instanceof DescriptionElementBase) {
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            Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
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            Boolean isUseDescription = false;
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            for (Marker marker : descriptionMarkers) {
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                if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
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                    isUseDescription = true;
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                }
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            }
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            if (isUseDescription == true && input instanceof CategoricalData) {
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                createUseRecordSection(rootElement);
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            } else {
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                createDescriptionElementSection(rootElement);
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            }
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        } else if (input instanceof Media) {
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            createMediaElementSection(rootElement);
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        } else if (input instanceof DerivedUnitFacade) {
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            if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
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                if(((DerivedUnitFacade) input).innerFieldUnit()==null){
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                    MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
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                }
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                else{
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                    createFieldUnitSection(rootElement);
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                }
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            }
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            else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
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                if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
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                    MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
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                }
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                else{
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                    createDerivedUnitBaseElementSection(rootElement);
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                }
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            }
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            else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
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                //TissueSample should only be created by using it's own class
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                //in future using only one class with different SpecimenOrObservationTypes is desired
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//                createTissueSampleSection(rootElement);
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            }
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            else{
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                createDerivedUnitBaseElementSection(rootElement);
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            }
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        } else if (input instanceof DnaSample){
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            DnaSample dnaSample = (DnaSample)input;
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            if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
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                createTissueSampleSection(rootElement);
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            }
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            else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
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                createDnaSampleSection(rootElement);
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            }
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        } else if (input instanceof MediaSpecimen){
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            createMediaSpecimenSection(rootElement);
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        }
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        else if(input instanceof Sequence){
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            createSequenceSection(rootElement);
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        }
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        else if(input instanceof SingleRead){
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            createSingleReadSection(rootElement);
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        }
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        else if (input instanceof FeatureNodeContainer) {
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            createFeatureDistributionSection(rootElement);
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        }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
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            createPolytomousKeyNodeSection(rootElement);
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        } else if (input instanceof User) {
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            createUserSection(rootElement);
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        } else if (input instanceof Group) {
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            createGroupSection(rootElement);
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        } else if (input instanceof TaxonRelationship) {
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            createTaxonRelationshipSection(rootElement);
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        } else if (input instanceof TermVocabulary) {
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            createTermVocabularySection(rootElement);
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        } else if (input instanceof DefinedTermBase) {
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            createDefinedTermSection(rootElement);
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        }
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        else {
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            createEmptySection(rootElement);
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        }
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        layout();
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    }
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    private void createEmptySection(RootElement parent) {
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        destroySections();
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        EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
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        addPart(emptySection);
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    }
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    private void createGroupSection(RootElement parent) {
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        destroySections();
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        GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
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        MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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        GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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        addPart(groupDetailSection);
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        addPart(memberDetailSection);
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        addPart(grantedAuthorityDetailSection);
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    }
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    /** {@inheritDoc} */
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    @Override
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    public ISelection getSelection() {
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        return selection;
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    }
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    /** {@inheritDoc} */
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    @Override
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    public void setSelection(ISelection selection, boolean reveal) {
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        this.selection = selection;
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        if(this.selection!=null){
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            SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
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            fireSelectionChanged(selectionChangedEvent);
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        }
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    }
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    private void createTaxonSections(RootElement parent) {
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        destroySections();
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        ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
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                ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
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        if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
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        	TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
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	        ExpandableComposite.TWISTIE	| ExpandableComposite.EXPANDED);
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	        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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	        addPart(taxonBaseDetailSection);
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        }else{
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        	if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON)){
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	            TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
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	            		ExpandableComposite.TWISTIE	| ExpandableComposite.EXPANDED);
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	            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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	            addPart(taxonBaseDetailSection);
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        	}
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        }
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        NonViralNameDetailSection nonViralNameSection = formFactory
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                .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
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                        ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE))){       
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	            NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
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	            		ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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	            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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	            addPart(referenceDetailSection);
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        }
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        if ( !PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS))){
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	            NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
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	            		ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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	            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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	            addPart(nomenclaturalStatusSection);
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        }
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        if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)  ){
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        	if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE))){
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        		ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
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        		formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        		addPart(protologSection);
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        	}
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        	if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) &&  PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION))){
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        		TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
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        		formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        		addPart(typeDesignationSection);
409
        	}
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        	if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP))){
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        		NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
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        		formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        		addPart(nameRelationshipSection);
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        	}
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        }
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        addPart(parsingMessagesSection);
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420
        addPart(nonViralNameSection);
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422
    }
423

    
424
    private void createNameSections(RootElement parent) {
425
        destroySections();
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        NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
427
                getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
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                        | ExpandableComposite.EXPANDED);
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        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
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        		ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
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        		ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
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        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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        addPart(nonViralNameSection);
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        addPart(nomenclaturalStatusSection);
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        addPart(referenceDetailSection);
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//TODO RL
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        if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
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			ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
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	        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
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447
	        TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
448
	        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
449

    
450
	        NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
451
	        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
452
	        addPart(protologSection);
453
	        addPart(typeDesignationSection);
454
	        addPart(nameRelationshipSection);
455
        }
456
    }
457

    
458
    private void createReferenceSections(RootElement parent) {
459
        destroySections();
460

    
461
        ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
462
        		ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
463

    
464
        addPart(referenceDetailSection);
465
    }
466

    
467
    private void createTeamOrPersonBaseDetailSection(RootElement parent) {
468
        destroySections();
469
        TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
470

    
471
        addPart(teamOrPersonBaseDetailSection);
472
    }
473

    
474
    private void createTeamDetailSection(RootElement parent) {
475
        destroySections();
476
        TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
477

    
478
        addPart(teamDetailSection);
479
    }
480

    
481
    private void createPersonDetailSection(RootElement parent) {
482
        destroySections();
483
        PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
484
        addPart(personDetailSection);
485
    }
486

    
487
    private void createDescriptionElementSection(RootElement parent) {
488
        destroySections();
489

    
490
        DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
491

    
492
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
493

    
494
        DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
495

    
496
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
497

    
498
        DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
499

    
500
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
501

    
502
        addPart(descriptionElementDetailSection);
503
        addPart(descriptionElementSourceSection);
504
        addPart(descriptionElementMediaSection);
505
    }
506

    
507
    private void createDescriptionSection(RootElement parent) {
508
        destroySections();
509
        DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
510

    
511
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
512

    
513
        NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
514

    
515
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
516

    
517
//        DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
518
//
519
//        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
520

    
521
        //		DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
522
        //				.createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
523
        //						getConversationHolder(), parent, Section.TWISTIE);
524
        //
525
        //		formFactory.createHorizontalSeparator(parent, SWT.BORDER);
526

    
527
        ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
528

    
529
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
530

    
531
        addPart(descriptionDetailSection);
532
        addPart(naturalLanguageSection);
533
//        addPart(describedSpecimenSection);
534
        //		addPart(descriptionSourceSection);
535
        addPart(scopeSection);
536
    }
537

    
538
    private void createSpecimenDescriptionSection(RootElement parent) {
539
        destroySections();
540
        DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
541
        addPart(descriptionDetailSection);
542
    }
543

    
544
    private void createUseDescriptionSection(RootElement parent) {
545
        destroySections();
546
        DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
547

    
548
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
549

    
550
        DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
551

    
552
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
553

    
554
        addPart(descriptionDetailSection);
555
        addPart(descriptionSourceSection);
556

    
557
    }
558

    
559
    private void createImageGallerySection(RootElement parent) {
560
        destroySections();
561
        DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
562

    
563
        addPart(descriptionDetailSection);
564
    }
565

    
566
    private void createMediaElementSection(RootElement parent) {
567
        destroySections();
568

    
569
        MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
570

    
571
        addPart(mediaDetailSection);
572
    }
573

    
574
    private void createDerivedUnitBaseElementSection(RootElement parent) {
575
        destroySections();
576

    
577
        DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
578
        //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
579
        if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
580
            derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
581
        }
582
        addPart(derivedUnitGeneralDetailSection);
583

    
584
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
585

    
586
        DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
587
        addPart(derivedUnitBaseDetailSection);
588

    
589
        //for editors working with facades
590
        if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
591
            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
592
            GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
593
            addPart(gatheringEventDetailSection);
594

    
595
            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
596
            FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
597
            addPart(fieldUnitDetailSection);
598
        }
599
        else{
600

    
601
            if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
602
                formFactory.createHorizontalSeparator(parent, SWT.BORDER);
603
                TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
604
                addPart(taxonAssociationDetailSection);
605
            }
606
            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
607
            DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
608
            addPart(identifierDetailSection);
609
        }
610
        if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
611
            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
612
            DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
613
            addPart(determinationDetailSection);
614
        }
615

    
616
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
617
        DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
618
        addPart(derivedUnitTypeDesignationSection);
619

    
620
    }
621

    
622
    private void createFieldUnitSection(RootElement parent) {
623
        destroySections();
624

    
625
        FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
626

    
627
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
628

    
629
        GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
630

    
631
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
632

    
633
        FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
634

    
635
        addPart(fielUnitGeneralDetailSection);
636
        addPart(gatheringEventDetailSection);
637
        addPart(fieldUnitDetailSection);
638

    
639
        if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
640
            formFactory.createHorizontalSeparator(parent, SWT.BORDER);
641
            DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
642
            addPart(determinationDetailSection);
643
        }
644
    }
645

    
646
    private void createTissueSampleSection(RootElement parent) {
647
        destroySections();
648

    
649
        TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
650

    
651
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
652

    
653
        SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
654

    
655
        addPart(section);
656
        addPart(sampleDesignationDetailSection);
657
    }
658

    
659
    private void createDnaSampleSection(RootElement parent) {
660
        destroySections();
661

    
662
        DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
663

    
664
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
665

    
666
        DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
667

    
668
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
669

    
670
        DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
671

    
672
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
673

    
674
        SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
675

    
676
        addPart(section);
677
        addPart(preparationPreservationSection);
678
        addPart(qualitySection);
679
        addPart(sampleDesignationDetailSection);
680
    }
681

    
682
    private void createSequenceSection(RootElement parent) {
683
        destroySections();
684

    
685
        SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
686

    
687
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
688

    
689
        SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
690

    
691
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
692

    
693
        SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
694

    
695

    
696
        addPart(section);
697
        addPart(referenceSection);
698
        addPart(contigFileSection);
699
    }
700

    
701
    private void createSingleReadSection(RootElement parent) {
702
        destroySections();
703

    
704
        SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
705
        addPart(section);
706

    
707
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
708

    
709
        SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
710
        addPart(pherogramSection);
711

    
712
    }
713

    
714
    private void createMediaSpecimenSection(RootElement parent) {
715
        destroySections();
716

    
717
        MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
718
        addPart(generalSection);
719

    
720
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
721

    
722
        RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
723
        addPart(rightsSection);
724

    
725
    }
726

    
727
    private void createFeatureDistributionSection(RootElement parent) {
728
        destroySections();
729

    
730
        FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
731

    
732
        addPart(featureDistributionSection);
733
    }
734

    
735
    private void createPolytomousKeyNodeSection(RootElement parent) {
736
        destroySections();
737

    
738
        PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
739

    
740
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
741

    
742
        PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
743

    
744
        addPart(polytomousKeyDetailSection);
745
        addPart(polytomousKeyNodeDetailSection);
746

    
747
    }
748

    
749
    private void createUseRecordSection(RootElement parent) {
750
        destroySections();
751

    
752
        UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
753

    
754
        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
755

    
756
        addPart(descriptionUseRecordSection);
757

    
758

    
759
    }
760

    
761
    private void createUserSection(RootElement parent) {
762
        destroySections();
763

    
764
        UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
765

    
766
        GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
767

    
768
        addPart(userDetailSection);
769
        addPart(groupByUserDetailSection);
770
    }
771

    
772
    private void createTaxonRelationshipSection(RootElement parent) {
773
        destroySections();
774

    
775
        TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
776

    
777
        ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
778
        addPart(taxonRelationshipDetailSection);
779
        addPart(referencedEntityBaseDetailSection);
780
    }
781

    
782
    private void createTermVocabularySection(RootElement parent) {
783
        destroySections();
784

    
785
        TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
786
        addPart(termVocabularyDetailSection);
787
    }
788

    
789
    private void createDefinedTermSection(RootElement parent) {
790
        destroySections();
791

    
792
        AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
793
        addPart(definedTermDetailSection);
794
    }
795

    
796
	@Override
797
	public void update(CdmDataChangeMap arg0) {
798
		
799
	}
800

    
801
}
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